FvH4_3g19470

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004657
Physical Location & Seq
Forward (+)
12621524 .. 12625040
3517 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19470.t2

Sequence Viewer

Length: 378 bp
ATGGGAAGGATATTCGTGGTAGAGCTAGAGGGAAGGTCTTACAGATGCAAGTTCTGCAAGACCCACTTGGCCCTCGCCTCCGACTGTGTTTCTCGGGCTTTTCATTGCCGCAGGGGAAAAGCCTTCCTCTTCAACAATGCGGTGAATATTACAATTGGAGCATTAGAGGAGAGGATGATGCTCTCAGGTGTGCACACTGTTGCGGATACATTTTGCTGCTTTTGTGGACAAATTGTGGGCTGGAAATATGAGACTGCACATGAGACGGCGCAGAAATATAAAGAGGGGAAGTTTGTCCTTGAAAGGGGGAGGATCGTTGAGGAAGTAGATTTTTCTACAGAGTTCGATATTGATTCTGAAGATGGTCTGGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

126

Amino Acids

14.25

Weight (kDa)

5.8

Isoelectric Point (pI)

23.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 104 2.3e-10 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 109, 140, 203
AclWI GGATC 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 133, 302
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 245, 257
Alw44I GTGCAC 1 cut(s) 191
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 282
BciVI GTATCC 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 245, 257
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 2 cut(s) 109, 217
BlsI GCNGC 2 cut(s) 110, 218
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 70
BmsI GCATC 2 cut(s) 35, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 103
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 2 cut(s) 245, 257
BsmBI CGTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 3 cut(s) 109, 140, 203
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 197
BspPI GGATC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 103
BssMI GATC 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 86, 199
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 2 cut(s) 245, 257
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 203
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 195
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 70
CviAII CATG 1 cut(s) 260
CviJI RGCY 5 cut(s) 25, 71, 98, 122, 240
CviKI_1 RGCY 5 cut(s) 25, 71, 98, 122, 240
DdeI CTNAG 1 cut(s) 184
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 1 cut(s) 263
FaiI YATR 3 cut(s) 249, 261, 279
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 109, 217
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 109, 217
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 270
GluI GCNGC 2 cut(s) 109, 217
HaeIII GGCC 1 cut(s) 71
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 1 cut(s) 353
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 193, 227
Hpy188I TCNGA 2 cut(s) 82, 358
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 193, 227
HpyAV CCTTC 2 cut(s) 27, 133
HpyCH4III ACNGT 2 cut(s) 86, 199
HpyCH4V TGCA 4 cut(s) 48, 57, 193, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 4 cut(s) 97, 171, 226, 353
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 2 cut(s) 35, 168
MaeI CTAG 1 cut(s) 26
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 2 cut(s) 121, 371
MfeI CAATTG 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 153, 231
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 9 cut(s) 22, 83, 88, 137, 160, 165, 277, 303, 313
MseI TTAA 1 cut(s) 376
MunI CAATTG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 312
NlaIII CATG 1 cut(s) 263
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 2 cut(s) 110, 218
PspPI GGNCC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 2 cut(s) 109, 217
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 195
SetI ASST 3 cut(s) 27, 38, 190
SfaNI GCATC 2 cut(s) 35, 168
SfcI CTRYAG 1 cut(s) 336
Sse9I AATT 2 cut(s) 153, 231
SsiI CCGC 3 cut(s) 109, 140, 203
SspI AATATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 26
TaaI ACNGT 2 cut(s) 86, 199
TaqI TCGA 1 cut(s) 345
TasI AATT 2 cut(s) 153, 231
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 191
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.