Rh5DG231800

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004657
Physical Location & Seq
Forward (+)
26455415 .. 26459061
3647 bp
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UTR
Exon/CDS
Intron
Rh5DG231800.1

Sequence Viewer

Length: 369 bp
ATGGGAAGAATATTCGTGTTAGAGCTAGAGGGAAGGTCTTACAGATGCAAGTTCTGCAAGACCCACTTGGCCCTCTTCTCCGATTGTGTCTCCAGGGCTTTTCATTGTCGCCGGGGAAAAGCGTACCTCTTCAACAATGCGGTAAATATAACTATGGGAGCATTAGAGGAGAGGGTGATGCTCTCAGGTGTGCACACTGTTGCGGATATATTTTGCTGCTTTTGTGGACAAATTGTGGGCTGGAAATATGAGACTGCACATGATGTGGCCCAGAAATATAAAGAGGGAAAGTTTGTCCTTGAAAGAGGGAGGATCATCGAGGACGTAGATTTTTCCACAGAGTTCGATATTGATTCTGAAGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

122

Amino Acids

13.98

Weight (kDa)

6.07

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 105 7e-11 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 203
AclWI GGATC 1 cut(s) 320
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 2 cut(s) 133, 302
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 94, 245
Alw44I GTGCAC 1 cut(s) 191
AlwI GGATC 1 cut(s) 320
AoxI GGCC 2 cut(s) 69, 267
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 70, 268
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 94, 245
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 94, 113
BmgT120I GGNCC 2 cut(s) 70, 268
BmrFI CCNGG 2 cut(s) 94, 113
BmsI GCATC 3 cut(s) 35, 168, 352
BpmI CTGGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 93, 112
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 93, 112
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 2 cut(s) 71, 269
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 112
BsmAI GTCTC 2 cut(s) 94, 245
BsnI GGCC 2 cut(s) 71, 269
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 2 cut(s) 140, 203
BspANI GGCC 2 cut(s) 71, 269
BspCNI CTCAG 1 cut(s) 197
BspPI GGATC 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 93, 112
BssMI GATC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 80, 134
BstAPI GCANNNNNTGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 184, 366
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 2 cut(s) 94, 245
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 92, 111
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 203
BsuRI GGCC 2 cut(s) 71, 269
BtsIMutI CAGTG 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 70, 268
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 260
CviJI RGCY 5 cut(s) 25, 71, 98, 240, 269
CviKI_1 RGCY 5 cut(s) 25, 71, 98, 240, 269
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 184, 366
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 80, 134
EarI CTCTTC 2 cut(s) 80, 134
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 263
FaiI YATR 6 cut(s) 149, 155, 209, 249, 261, 279
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 217
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 71, 269
HapII CCGG 1 cut(s) 112
Hin1II CATG 1 cut(s) 263
HinfI GANTC 1 cut(s) 353
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 193, 227
Hpy188I TCNGA 2 cut(s) 82, 358
Hpy8I GTNNAC 2 cut(s) 193, 227
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 48, 57, 193, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 184, 366
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 6 cut(s) 79, 106, 125, 171, 226, 284
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 3 cut(s) 35, 168, 352
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 324
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 3 cut(s) 18, 67, 121
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 1 cut(s) 231
MnlI CCTC 9 cut(s) 22, 83, 137, 160, 165, 277, 299, 303, 313
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 94, 113
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 312
NlaIII CATG 1 cut(s) 263
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 2 cut(s) 70, 268
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 2 cut(s) 70, 268
ScrFI CCNGG 2 cut(s) 94, 113
SduI GDGCHC 1 cut(s) 195
SetI ASST 5 cut(s) 27, 38, 129, 190, 327
SfaNI GCATC 3 cut(s) 35, 168, 352
Sse9I AATT 1 cut(s) 231
SsiI CCGC 2 cut(s) 140, 203
SspI AATATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 92, 111
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 318, 345
TasI AATT 1 cut(s) 231
TfiI GAWTC 1 cut(s) 353
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 191
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.