Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004657

Physical Location & Seq

Genomic Coordinates Reverse (-)

2454315 .. 2457433

Gene Structure 3119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGGAGAATTTTCCTGGTTGAATTAGATGGCAGAGCTTATAGATGCAGATTATGTGACAGCCCTCTTGCCCTTGCCGATGATATCATCTCTCGGTCTTTCAGCTGCCGTCGAGGAGGGGCATATCTGTTCAGCACTGTGGTGAACATAACGCTTGGTCCCGAGGAAGAGAGGCTAATGCTTTCTGGTTTGCATACTGTAGAAGATATTTTTTGCTGCTGCTGCGGACAGATTCTTGGATGGAAATATGTAATTGCACATGACAGAAACCAAATATACAAGGAAGGAAAGTTTGTGCTCGAAAGATGGAGGATAGAAGTGGATGTTGCTGAGGAATTCAATTTAGACGCTCCTCCCGGTTCAAGTGACACAGAAATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

128

Amino Acids

14.39

Weight (kDa)

4.88

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53940
fragaria_vesca	FvH4_3g08780 FvH4_3g08780 FvH4_3g19470
malus_domestica	MD03G1231600.v1.1 MD05G1311500.v1.1 MD10G1290700.v1.1
prunus_persica	Prupe.4G051300_v2.0.a1 Prupe.4G176300_v2.0.a1
pyrus_communis	pycom05g28770 pycom10g24310
rosa_chinensis	RchiOBHm_Chr5g0008981 RchiOBHm_Chr5g0032731
rosa_laevigata	RLG00000031622 RLG00000033422
rosa_multiflora	Rmu_co8513721.1_g000001 Rmu_sc0027546.1_g000004
rosa_roxburghii	Rroxscaffold_1G00047370 Rroxscaffold_1G00067040 Rroxscaffold_1G00067670
rosa_rugosa	Rorug04G0440700 Rorug04G0440700
rosa_samantha	Rh5AG069600 Rh5BG066300 Rh5BG227100 Rh5CG077500 Rh5CG254900 Rh5DG065500 Rh5DG231800
rosa_wichuraiana	Rw5G006490 Rw5G020720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	9, 335, 375
AgsI	TTSAA	3 cut(s)	23, 340, 363
AjnI	CCWGG	1 cut(s)	15
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	38, 105
AluI	AGCT	2 cut(s)	38, 105
Alw21I	GWGCWC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	161
ApeKI	GCWGC	4 cut(s)	105, 216, 219, 222
ApoI	RAATTY	3 cut(s)	9, 335, 375
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	4 cut(s)	92, 203, 206, 209
BccI	CCATC	3 cut(s)	23, 234, 300
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	4 cut(s)	106, 217, 220, 223
BlsI	GCNGC	4 cut(s)	107, 218, 221, 224
Bme1390I	CCNGG	2 cut(s)	17, 357
Bme18I	GGWCC	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	17, 357
BmsI	GCATC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	245, 328
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	2 cut(s)	129, 342
BseXI	GCAGC	4 cut(s)	92, 203, 206, 209
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	139, 199
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	330, 381
BstF5I	GGATG	2 cut(s)	245, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	15, 355
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	92, 203, 206, 209
BtsCI	GGATG	2 cut(s)	245, 328
BtsIMutI	CAGTG	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	356
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	4 cut(s)	38, 63, 105, 175
CviKI_1	RGCY	4 cut(s)	38, 63, 105, 175
DdeI	CTNAG	2 cut(s)	330, 381
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	1 cut(s)	263
FaiI	YATR	8 cut(s)	42, 55, 124, 149, 195, 249, 261, 277
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	106, 217, 220, 223
FokI	GGATG	2 cut(s)	252, 335
Fsp4HI	GCNGC	4 cut(s)	106, 217, 220, 223
GluI	GCNGC	4 cut(s)	106, 217, 220, 223
HapII	CCGG	1 cut(s)	357
HgaI	GACGC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	139, 199
HpyCH4V	TGCA	3 cut(s)	48, 193, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	330, 381
Hsp92II	CATG	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	4 cut(s)	2, 29, 171, 370
Lsp1109I	GCAGC	4 cut(s)	92, 203, 206, 209
LweI	GCATC	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	56, 365
MboII	GAAGA	2 cut(s)	179, 215
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	6 cut(s)	9, 23, 252, 335, 340, 375
MnlI	CCTC	8 cut(s)	75, 107, 110, 157, 165, 303, 325, 363
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	17, 357
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	357
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	2 cut(s)	56, 365
OliI	CACNNNNGTG	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	107, 218, 221, 224
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	140
SatI	GCNGC	4 cut(s)	106, 217, 220, 223
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	17, 357
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	2 cut(s)	40, 107
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	6 cut(s)	9, 23, 252, 335, 340, 375
SsiI	CCGC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	15, 355
TaaI	ACNGT	2 cut(s)	139, 199
TaqI	TCGA	2 cut(s)	112, 300
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	6 cut(s)	9, 23, 252, 335, 340, 375
TfiI	GAWTC	1 cut(s)	232
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	56, 365
TseI	GCWGC	4 cut(s)	105, 216, 219, 222
Tsp45I	GTSAC	2 cut(s)	56, 365
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	3 cut(s)	9, 335, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.