Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8513721.1

Orthogroup ID

OG0004657

Physical Location & Seq

Genomic Coordinates Reverse (-)

1551 .. 4108

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8513721.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

tctttcaactgccgtcgagggagggcatatctgttcagcaatgtggtgaatataacgcttggtcctgaggaagagaggctaatgctttctggtttgcatactgtagaagatattttttgtgtctgctgcggacagattcttggctggaaatatgtaattgcacatgacaaaaaccaaaagtacaaggaaggaaagtttgtgctagagagatggaggatagaggaggatgtagcggaggaattcaatctggatactcgcccaggttcaagtgatgaaattccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

94

Amino Acids

10.91

Weight (kDa)

5.14

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53940
fragaria_vesca	FvH4_3g08780 FvH4_3g08780 FvH4_3g19470
malus_domestica	MD03G1231600.v1.1 MD05G1311500.v1.1 MD10G1290700.v1.1
prunus_persica	Prupe.4G051300_v2.0.a1 Prupe.4G176300_v2.0.a1
pyrus_communis	pycom05g28770 pycom10g24310
rosa_chinensis	RchiOBHm_Chr5g0008981 RchiOBHm_Chr5g0032731
rosa_laevigata	RLG00000031622 RLG00000033422
rosa_multiflora	Rmu_co8513721.1_g000001 Rmu_sc0027546.1_g000004
rosa_roxburghii	Rroxscaffold_1G00047370 Rroxscaffold_1G00067040 Rroxscaffold_1G00067670
rosa_rugosa	Rorug04G0440700 Rorug04G0440700
rosa_samantha	Rh5AG069600 Rh5BG066300 Rh5BG227100 Rh5CG077500 Rh5CG254900 Rh5DG065500 Rh5DG231800
rosa_wichuraiana	Rw5G006490 Rw5G020720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	129, 233
AcsI	RAATTY	2 cut(s)	239, 276
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	7, 244, 267
AjnI	CCWGG	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	239, 276
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	259
Bse21I	CCTNAGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	113
BspACI	CCGC	2 cut(s)	129, 233
BspCNI	CTCAG	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	2 cut(s)	79, 144
CviKI_1	RGCY	2 cut(s)	79, 144
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	167
FaiI	YATR	5 cut(s)	28, 53, 99, 153, 165
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	65, 248
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	97, 161
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	167
LpnPI	CCDG	6 cut(s)	75, 78, 130, 233, 246, 273
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	203
MboII	GAAGA	2 cut(s)	83, 119
MluCI	AATT	3 cut(s)	156, 239, 276
MnlI	CCTC	8 cut(s)	11, 15, 61, 69, 207, 214, 217, 229
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
NlaIII	CATG	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SatI	GCNGC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	156, 239, 276
SsiI	CCGC	2 cut(s)	129, 233
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	156, 239, 276
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	239, 276
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.