Rroxscaffold_1G00067670

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004657
Physical Location & Seq
Forward (+)
88947576 .. 88950758
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067670.1

Sequence Viewer

Length: 381 bp
ATGGGGAGGATTTTCCTGGTTGAATTGGAAGGCAGAACTTACAGATGCCGATTCTGTGACAGCCCTCTTGCTTTAGCCGACGATGTCCTCTCTCGGTCTTTCAACTGCCGTCAAGGGAGGGCATATCTGTTCAGCAATGTGGTGAATATAACGCTTGGTCCTGAGGAAGAAAGGCTAATGCTTTCTGGTTTGCATACTGTAGAAGATATTTTTTGTGTCTGCTGCGGACAGATTCTTGGCTGGAAATATGTAATTGCACATGACAAAAACCAAAAGTACAAGGAAGGAAAGTTTGTGCTAGAGAGATGGAGGATAGAGGAGGATGTAGCAGAGGAATTCAATCTGGATACTCGCCCAGGTTCAAGTGATGAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

126

Amino Acids

14.57

Weight (kDa)

5.07

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 106 6.5e-10 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AcsI RAATTY 2 cut(s) 335, 372
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 4 cut(s) 23, 103, 340, 363
AjnI CCWGG 2 cut(s) 15, 355
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 2 cut(s) 335, 372
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 162
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 17, 357
BciVI GTATCC 1 cut(s) 340
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 17, 357
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 17, 357
BmsI GCATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 355
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 2 cut(s) 17, 357
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 209
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 355
Bst2UI CCWGG 2 cut(s) 17, 357
Bst4CI ACNGT 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 328
BstNI CCWGG 2 cut(s) 17, 357
BstSCI CCNGG 2 cut(s) 15, 355
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 162
BsuI GTATCC 1 cut(s) 340
BtsCI GGATG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 63, 77, 175, 240
CviKI_1 RGCY 4 cut(s) 63, 77, 175, 240
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 15, 355
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 124, 149, 195, 249, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 263
HinfI GANTC 2 cut(s) 51, 232
HphI GGTGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 161, 344
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 23, 278
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 193, 257
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 1 cut(s) 263
LpnPI CCDG 8 cut(s) 2, 29, 171, 174, 226, 329, 342, 369
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 2 cut(s) 179, 215
MluCI AATT 4 cut(s) 23, 252, 335, 372
MnlI CCTC 8 cut(s) 75, 98, 111, 157, 303, 310, 313, 325
MspR9I CCNGG 2 cut(s) 17, 357
MvaI CCWGG 2 cut(s) 17, 357
NlaIII CATG 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 51, 232
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 15, 355
PspGI CCWGG 2 cut(s) 15, 355
PspPI GGNCC 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SatI GCNGC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 17, 357
SetI ASST 1 cut(s) 361
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 158
Sse9I AATT 4 cut(s) 23, 252, 335, 372
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 15, 355
TaaI ACNGT 1 cut(s) 199
TaqII GACCGA 1 cut(s) 84
TasI AATT 4 cut(s) 23, 252, 335, 372
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 2 cut(s) 51, 232
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 56
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 335, 372
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.