pycom10g24310

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004657
Physical Location & Seq
Forward (+)
26192952 .. 26195048
2097 bp
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UTR
Exon/CDS
Intron
pycom10g24310.1

Sequence Viewer

Length: 384 bp
ATGGGGAGAATTTTTCTGATTGAATTGGATGGCAGAACTTACAGATGTAGATTCTGTGACAGCGCGCTTGCCCTTGCCGGTGATGTCCTCTCTCGGAATTTCAACTGCGGTCGAAGAAGGGCATATCTGTTCAGCAATGTGGTGAACATAACGCTTGGTCCTGAGGAAGAGAGGCTAATGCTCTCTGGTTTGCATACTGTAGAAGATATATTTTGTTGCTGCTGCGGGCAGATTCTTGGCTGGAAATATGTAATTGCACACGACCAAACCCAAAAATACAAGGAAGGAAAGTTTGTGCTTGAAAGATGGAGGATAGTGGAGGATGTAGCTGAGTTATTCAACTTGGACGCTCGTCTTGGTTCAAGTGATGCAGAGAGTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

128

Amino Acids

14.52

Weight (kDa)

5.69

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 105 1.4e-08 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 65
AciI CCGC 2 cut(s) 108, 225
AcsI RAATTY 2 cut(s) 9, 97
AgsI TTSAA 5 cut(s) 23, 103, 302, 340, 363
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 219, 222
ApoI RAATTY 2 cut(s) 9, 97
AspLEI GCGC 2 cut(s) 65, 67
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 92, 154
AvaII GGWCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 162
BbvI GCAGC 2 cut(s) 206, 209
BccI CCATC 2 cut(s) 23, 300
BfaI CTAG 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 220, 223
BlsI GCNGC 2 cut(s) 221, 224
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 358
BoxI GACNNNNGTC 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 77
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 142
BseGI GGATG 2 cut(s) 34, 328
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 153, 321
BsePI GCGCGC 1 cut(s) 63
BseXI GCAGC 2 cut(s) 206, 209
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 363
BspACI CCGC 2 cut(s) 108, 225
BspCNI CTCAG 2 cut(s) 154, 322
BspFNI CGCG 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssHII GCGCGC 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 65, 69, 227
BstDEI CTNAG 2 cut(s) 162, 330
BstF5I GGATG 2 cut(s) 34, 328
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 2 cut(s) 65, 67
BstMCI CGRYCG 1 cut(s) 112
BstPAI GACNNNNGTC 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 206, 209
Bsu36I CCTNAGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 34, 328
Cac8I GCNNGC 3 cut(s) 65, 69, 227
CfoI GCGC 2 cut(s) 65, 67
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 356
CviJI RGCY 3 cut(s) 175, 240, 329
CviKI_1 RGCY 3 cut(s) 175, 240, 329
DdeI CTNAG 2 cut(s) 162, 330
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 162
FaiI YATR 5 cut(s) 124, 149, 195, 209, 249
FaqI GGGAC 1 cut(s) 363
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 220, 223
FokI GGATG 2 cut(s) 41, 335
Fsp4HI GCNGC 2 cut(s) 220, 223
FspBI CTAG 1 cut(s) 382
GlaI GCGC 2 cut(s) 64, 66
GluI GCNGC 2 cut(s) 220, 223
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 356
HhaI GCGC 2 cut(s) 65, 67
Hin6I GCGC 2 cut(s) 63, 65
HinP1I GCGC 2 cut(s) 63, 65
HinfI GANTC 3 cut(s) 51, 232, 376
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 92, 154
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 18, 96
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 111, 278
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 193, 257, 371
HpyF3I CTNAG 2 cut(s) 162, 330
HspAI GCGC 2 cut(s) 63, 65
LpnPI CCDG 4 cut(s) 91, 171, 174, 226
Lsp1109I GCAGC 2 cut(s) 206, 209
LweI GCATC 1 cut(s) 358
MaeI CTAG 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 3 cut(s) 126, 179, 215
MluCI AATT 4 cut(s) 9, 23, 97, 252
MnlI CCTC 5 cut(s) 98, 157, 165, 303, 313
MspI CCGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 56
PauI GCGCGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 51, 232
PkrI GCNGC 2 cut(s) 221, 224
PshAI GACNNNNGTC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 158
PteI GCGCGC 1 cut(s) 63
SatI GCNGC 2 cut(s) 220, 223
Sau96I GGNCC 1 cut(s) 158
SetI ASST 1 cut(s) 331
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 158
Sse9I AATT 4 cut(s) 9, 23, 97, 252
SsiI CCGC 2 cut(s) 108, 225
SspMI CTAG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 112
TasI AATT 4 cut(s) 9, 23, 97, 252
TfiI GAWTC 2 cut(s) 51, 232
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 219, 222
Tsp45I GTSAC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 9, 97
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.