FvH4_3g08780

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004657
Physical Location & Seq
Forward (+)
5130468 .. 5133476
3009 bp
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UTR
Exon/CDS
Intron
FvH4_3g08780.t1

Sequence Viewer

Length: 381 bp
ATGGGGAGGATTTACGTGGTGGAATTGGAAGGCAGAAGTTACAGATGCCGGTTCTGTGATGTCCCTCTTGCTCTCGCCGATGATGTGCTCTCTCGGTCCTTCAACTGCCGTCAAGGGAGTGCATATCTGTTCAGCAATGTGGTGAATGTAATGCTTGGTCCTGAGGAAGAGAGGGTAATGATTTCTGGTTTGCATACTGTAGAAGATATTTTTTGTGTCTGCTGTGGACAGATTCTTGGCTGGAGATATGTAATTGCACATGACAAAAACCAAAAGTACAAGGAAGGAAAGTTTGTGCTAGAGAGATGGAGGATAGAGGAGGATGTAGCGGAGGAATTCAGTCTGGACTCCCGCCCCGGTTCAAGTGATGCAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

127

Amino Acids

14.48

Weight (kDa)

4.92

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 106 2.3e-09 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 329, 352
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 2 cut(s) 103, 363
Alw21I GWGCWC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 96, 158
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 2 cut(s) 96, 158
AxyI CCTNAGG 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 90
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 96, 158
BmgT120I GGNCC 2 cut(s) 96, 158
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 35, 358
BpmI CTGGAG 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 48
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 49, 357
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 90
BspACI CCGC 2 cut(s) 329, 352
BspCNI CTCAG 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 96, 158
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 260
CviJI RGCY 1 cut(s) 240
CviKI_1 RGCY 1 cut(s) 240
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 96, 158
Eco81I CCTNAGG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 335
FaeI CATG 1 cut(s) 263
FaiI YATR 4 cut(s) 124, 195, 249, 261
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 259
FauI CCCGC 1 cut(s) 359
FokI GGATG 1 cut(s) 335
FspBI CTAG 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 262
HapII CCGG 2 cut(s) 49, 357
Hin1II CATG 1 cut(s) 263
HinfI GANTC 2 cut(s) 232, 347
HpaII CCGG 2 cut(s) 49, 357
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 161, 344
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 23, 109, 278
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 122, 193, 257, 371
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 263
LpnPI CCDG 6 cut(s) 62, 171, 174, 226, 329, 370
LweI GCATC 2 cut(s) 35, 358
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 38
MboII GAAGA 2 cut(s) 179, 215
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 3 cut(s) 23, 252, 335
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 7 cut(s) 75, 157, 165, 303, 310, 313, 325
MspI CCGG 2 cut(s) 49, 357
MspR9I CCNGG 1 cut(s) 357
NciI CCSGG 1 cut(s) 357
NlaIII CATG 1 cut(s) 263
PfeI GAWTC 1 cut(s) 232
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 16
PspPI GGNCC 2 cut(s) 96, 158
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
Sau96I GGNCC 2 cut(s) 96, 158
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 90
SetI ASST 1 cut(s) 18
SfaNI GCATC 2 cut(s) 35, 358
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 2 cut(s) 96, 158
Sse9I AATT 3 cut(s) 23, 252, 335
SsiI CCGC 2 cut(s) 329, 352
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 18
TaqII GACCGA 1 cut(s) 84
TasI AATT 3 cut(s) 23, 252, 335
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 96, 158
XapI RAATTY 1 cut(s) 335
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.