Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010503

Physical Location & Seq

Genomic Coordinates Forward (+)

5448718 .. 5455994

Gene Structure 7277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG066100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGCATATGGCAAATGTGTATAGGATTAGTGAACGTTACTTGATTGTTTACTTTATCTTGCTGTTCTTATTTGGTTCGTGTTTTGGTTCTAACTCTTCTGATGCTGTTTCGAGTACAGCGCCTTATGCGATGCGCATAAACTGTGGAGCTCGTCATGATGTTCATACAGAGCCAACCAATACACTGTGGTATAGGGATTTCGGATATACAGGGGGAATTCCTAGTAATGCTTCACTCCCGGGTTATGTCAGTCCTCACCTTGATACGCTGAGATATTTTCCGCTGTCTGAAGGTCCTGAAAATTGTTACCATATCAATAGAGTTCCTCAAGGACACTACTCAGTGAGGATTTTCTTTGGATCGGTTAAATCAAAAAGCGATGACCTTGAGCCTTTATTTGATATTTCTGTCGAGGGTACTCTGATTACTTCTTTAAAATCTGGTTGGAGCAACCAGGATGATCAAGTTTTTGCCGAAGCACAAGTGTTTCTTACTGATGGCTCTGTTTCTATCTGCTTTCATAGCACTGGTCATGGTGATCCAGCAATCCTTGCCCTGGAAATTCTTCAAATTGATGATCAAGCATACCATTTCAGCCAACAATCTGGTCAAGGAATAATTCTTAGAACAGTGTCAAGATTGAGTTGTGGTGATGGAAAGCCAAAGTTTGGTGCTGACTACGGTGGGGATCCCTGGGGCGGTGATAGGTTTTGGAGACCTACTAAAACCTTTGGTCAGAGTGGTACTATGGCAATATCCACTGAAACCAGCATTAAGCAGGTTTCAAAACCACCAAACTTTTATCCAGCAGGGCTTTATAAGAAAGCAATTGTGAGTTCCGACAGTCAGCCCGATTTAGAATATACCATGGACGTTGATCCTAATAGAAACTACTCGATCTGGTTACACTTTGCTGAGATAGATCCAGCGATCACTGGTGTAGGTCAGAGAGTATTTGACGTTATTATAAATGGTGACATTGCATTTGAAGAGGTGGATATTGTCAAACTGAGTGGGGACCGTTATTCTGCTCTTGTACTTAACAGAACTGTTCCCGTTAATGGGAGGAGTTTGACAATAACCTTGCAACCTACAAAAGGTGATCATGCCATAATCTGTGCAATTGAGATATTTGAAAGTATATTCGCCGAGTCGAAAACTTTACCAGATGAAGTAAAGGCTTTACAAACATTGAAGACTACATTAGGGCTTCCTGTTCGGTTGGGGTGGAATGGTGATCCGTGTGTTCCCCAGCAACACCCATGGAGTGGAGCAGATTGCCAATTGGATAGAAATAGCAACAAATGGGTTATTGACGGACTGGGTCTCGACAACCAAGGTTTAAAGGGATTTTTGCGGGATGACATTTCAAAATTGCGTCATCTACAGAGCTTAAATCTTAGTGGAAATAAAATACATGGAGCCATTCCAACCTCGCTTGGAGCAATACCAAGTTTGGAAGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin_like

Protein Analysis

489

Amino Acids

53.83

Weight (kDa)

5.51

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	46 - 379	3.1e-55	Malectin-like domain
Malectin	PF11721	231 - 371	4.8e-15	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28340
fragaria_vesca	FvH4_3g08800 FvH4_3g08800 FvH4_3g08800 FvH4_3g08800
malus_domestica	MD10G1291000.v1.1
prunus_persica	Prupe.4G051100_v2.0.a1
pyrus_communis	pycom10g24320
rosa_chinensis	RchiOBHm_Chr5g0008961
rosa_laevigata	RLG00000031620
rosa_multiflora	Rmu_sc0004677.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067060 Rroxscaffold_1G00067690 Rroxscaffold_4G00319870
rosa_rugosa	Rorug04G0440600 Rorug04G0440700
rosa_samantha	Rh5AG069300 Rh5BG066100 Rh5CG077200 Rh5DG065200
rosa_wichuraiana	Rw5G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	819, 968
Acc16I	TGCGCA	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	769
AccB7I	CCANNNNNTGG	2 cut(s)	668, 1268
AciI	CCGC	3 cut(s)	281, 699, 1357
AclI	AACGTT	1 cut(s)	34
AclWI	GGATC	7 cut(s)	367, 533, 683, 696, 872, 917, 1232
AcsI	RAATTY	2 cut(s)	216, 561
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	4 cut(s)	115, 418, 745, 1038
AfiI	CCNNNNNNNGG	7 cut(s)	556, 668, 698, 1061, 1062, 1097, 1268
AgsI	TTSAA	6 cut(s)	569, 786, 989, 1136, 1195, 1371
AjnI	CCWGG	3 cut(s)	453, 555, 692
AluBI	AGCT	2 cut(s)	149, 1392
AluI	AGCT	2 cut(s)	149, 1392
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	709, 1331
AlwI	GGATC	7 cut(s)	367, 533, 683, 696, 872, 917, 1232
Ama87I	CYCGRG	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	216, 561
ArsI	GACNNNNNNTTYG	2 cut(s)	968, 1000
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	2 cut(s)	121, 135
AspS9I	GGNCC	2 cut(s)	293, 1018
AsuC2I	CCSGG	2 cut(s)	239, 240
AsuHPI	GGTGA	7 cut(s)	248, 548, 662, 713, 986, 1112, 1247
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	293, 1018
BamHI	GGATCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	1202
Bbv12I	GWGCWC	1 cut(s)	151
BccI	CCATC	2 cut(s)	491, 647
BciT130I	CCWGG	3 cut(s)	455, 557, 694
BclI	TGATCA	3 cut(s)	460, 577, 1102
BcnI	CCSGG	2 cut(s)	239, 240
BcoDI	GTCTC	2 cut(s)	709, 1331
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	1385
BfoI	RGCGCY	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	769
Bme1390I	CCNGG	5 cut(s)	239, 240, 455, 557, 694
Bme18I	GGWCC	2 cut(s)	293, 1018
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	293, 1018
BmiI	GGNNCC	3 cut(s)	690, 1019, 1423
BmrFI	CCNGG	5 cut(s)	239, 240, 455, 557, 694
BmrI	ACTGGG	1 cut(s)	1331
BmsI	GCATC	2 cut(s)	91, 120
BmuI	ACTGGG	1 cut(s)	1331
BpiI	GAAGAC	1 cut(s)	1202
BpuEI	CTTGAG	2 cut(s)	312, 407
BpuMI	CCSGG	2 cut(s)	239, 240
BsaI	GGTCTC	2 cut(s)	709, 1331
BsaJI	CCNNGG	7 cut(s)	238, 555, 692, 693, 867, 1262, 1336
Bsc4I	CCNNNNNNNGG	7 cut(s)	556, 668, 698, 1061, 1062, 1097, 1268
Bse1I	ACTGG	3 cut(s)	532, 940, 1326
Bse3DI	GCAATG	1 cut(s)	978
BseBI	CCWGG	3 cut(s)	455, 557, 694
BseDI	CCNNGG	7 cut(s)	238, 555, 692, 693, 867, 1262, 1336
BseGI	GGATG	2 cut(s)	463, 1366
BseLI	CCNNNNNNNGG	7 cut(s)	556, 668, 698, 1061, 1062, 1097, 1268
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	4 cut(s)	260, 354, 906, 1001
BseNI	ACTGG	3 cut(s)	532, 940, 1326
BseRI	GAGGAG	1 cut(s)	1081
BseYI	CCCAGC	1 cut(s)	1251
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	1031
BslI	CCNNNNNNNGG	7 cut(s)	556, 668, 698, 1061, 1062, 1097, 1268
BsmAI	GTCTC	2 cut(s)	709, 1331
BsmFI	GGGAC	1 cut(s)	1031
Bso31I	GGTCTC	2 cut(s)	709, 1331
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp19I	CCATGG	2 cut(s)	867, 1262
BspACI	CCGC	3 cut(s)	281, 699, 1357
BspCNI	CTCAG	4 cut(s)	261, 353, 907, 1002
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	690, 1019, 1423
BspMI	ACCTGC	1 cut(s)	769
BspPI	GGATC	7 cut(s)	367, 533, 683, 696, 872, 917, 1232
BspTNI	GGTCTC	2 cut(s)	709, 1331
BsrDI	GCAATG	1 cut(s)	978
BsrI	ACTGG	3 cut(s)	532, 940, 1326
BssECI	CCNNGG	7 cut(s)	238, 555, 692, 693, 867, 1262, 1336
BssT1I	CCWWGG	3 cut(s)	867, 1262, 1336
Bst2UI	CCWGG	3 cut(s)	455, 557, 694
Bst4CI	ACNGT	7 cut(s)	143, 186, 631, 683, 845, 1022, 1051
Bst6I	CTCTTC	2 cut(s)	100, 984
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstDEI	CTNAG	6 cut(s)	269, 340, 623, 915, 1010, 1400
BstDSI	CCRYGG	2 cut(s)	867, 1262
BstENI	CCTNNNNNAGG	1 cut(s)	1095
BstF5I	GGATG	2 cut(s)	463, 1366
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	121, 135
BstMAI	GTCTC	2 cut(s)	709, 1331
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 522, 551
BstNI	CCWGG	3 cut(s)	455, 557, 694
BstSCI	CCNGG	5 cut(s)	237, 238, 453, 555, 692
BstSFI	CTRYAG	1 cut(s)	1385
BstV2I	GAAGAC	1 cut(s)	1202
BstX2I	RGATCY	2 cut(s)	688, 922
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	2 cut(s)	688, 922
BtgI	CCRYGG	2 cut(s)	867, 1262
BtgZI	GCGATG	2 cut(s)	143, 393
BtsCI	GGATG	2 cut(s)	463, 1366
BtsIMutI	CAGTG	6 cut(s)	182, 348, 525, 636, 759, 933
BveI	ACCTGC	1 cut(s)	769
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	121, 135
Cfr13I	GGNCC	2 cut(s)	293, 1018
Cfr9I	CCCGGG	1 cut(s)	238
CseI	GACGC	1 cut(s)	1367
Csp6I	GTAC	4 cut(s)	114, 417, 744, 1037
CspCI	CAANNNNNGTGG	2 cut(s)	994, 1029
CviAII	CATG	6 cut(s)	155, 533, 868, 1106, 1263, 1418
CviQI	GTAC	4 cut(s)	114, 417, 744, 1037
DdeI	CTNAG	6 cut(s)	269, 340, 623, 915, 1010, 1400
DraI	TTTAAA	2 cut(s)	435, 1344
Eam1104I	CTCTTC	2 cut(s)	100, 984
EarI	CTCTTC	2 cut(s)	100, 984
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	3 cut(s)	867, 1262, 1336
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	2 cut(s)	709, 1331
Eco47I	GGWCC	2 cut(s)	293, 1018
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	1095
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	3 cut(s)	453, 555, 692
EcoT14I	CCWWGG	3 cut(s)	867, 1262, 1336
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	3 cut(s)	867, 1262, 1336
FaeI	CATG	6 cut(s)	158, 536, 871, 1109, 1266, 1421
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	1 cut(s)	1031
FatI	CATG	6 cut(s)	154, 532, 867, 1105, 1262, 1417
FauI	CCCGC	1 cut(s)	1350
FauNDI	CATATG	1 cut(s)	6
FbaI	TGATCA	3 cut(s)	460, 577, 1102
FokI	GGATG	2 cut(s)	470, 1373
FriOI	GRGCYC	1 cut(s)	151
FspAI	RTGCGCAY	1 cut(s)	134
FspBI	CTAG	1 cut(s)	222
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	2 cut(s)	120, 134
GsaI	CCCAGC	1 cut(s)	1255
HaeII	RGCGCY	1 cut(s)	122
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	1367
HhaI	GCGC	2 cut(s)	121, 135
Hin1II	CATG	6 cut(s)	158, 536, 871, 1109, 1266, 1421
Hin6I	GCGC	2 cut(s)	119, 133
HinP1I	GCGC	2 cut(s)	119, 133
HinfI	GANTC	1 cut(s)	1151
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	7 cut(s)	248, 548, 662, 713, 986, 1112, 1247
Hpy166II	GTNNAC	2 cut(s)	32, 49
Hpy188I	TCNGA	7 cut(s)	100, 203, 289, 423, 738, 841, 948
Hpy188III	TCNNGA	4 cut(s)	155, 296, 636, 1328
Hpy8I	GTNNAC	2 cut(s)	32, 49
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	7 cut(s)	143, 186, 631, 683, 845, 1022, 1051
HpyCH4IV	ACGT	3 cut(s)	34, 873, 960
HpyCH4V	TGCA	4 cut(s)	4, 983, 1087, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 522, 551
HpyF3I	CTNAG	6 cut(s)	269, 340, 623, 915, 1010, 1400
HpySE526I	ACGT	3 cut(s)	34, 873, 960
Hsp92II	CATG	6 cut(s)	158, 536, 871, 1109, 1266, 1421
HspAI	GCGC	2 cut(s)	119, 133
Ksp22I	TGATCA	3 cut(s)	460, 577, 1102
LmnI	GCTCC	5 cut(s)	146, 447, 1271, 1421, 1442
LweI	GCATC	2 cut(s)	91, 120
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	34, 873, 960
MaeIII	GTNAC	4 cut(s)	35, 305, 903, 974
MboII	GAAGA	4 cut(s)	87, 557, 1001, 1207
MfeI	CAATTG	3 cut(s)	828, 1122, 1283
MflI	RGATCY	2 cut(s)	688, 922
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	9 cut(s)	216, 301, 561, 570, 618, 828, 1122, 1283, 1373
MlyI	GAGTC	1 cut(s)	1160
MmeI	TCCRAC	3 cut(s)	425, 864, 1454
MnlI	CCTC	7 cut(s)	264, 336, 339, 406, 985, 1059, 1444
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	7 cut(s)	366, 434, 774, 1041, 1059, 1343, 1394
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	5 cut(s)	239, 240, 455, 557, 694
MunI	CAATTG	3 cut(s)	828, 1122, 1283
MvaI	CCWGG	3 cut(s)	455, 557, 694
MwoI	GCNNNNNNNGC	3 cut(s)	125, 522, 551
NciI	CCSGG	2 cut(s)	239, 240
NcoI	CCATGG	2 cut(s)	867, 1262
NdeI	CATATG	1 cut(s)	6
NlaIII	CATG	6 cut(s)	158, 536, 871, 1109, 1266, 1421
NlaIV	GGNNCC	3 cut(s)	690, 1019, 1423
NmeAIII	GCCGAG	1 cut(s)	1174
NmuCI	GTSAC	1 cut(s)	974
NsbI	TGCGCA	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	154
PasI	CCCWGGG	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	564
PflFI	GACNNNGTC	1 cut(s)	1323
PflMI	CCANNNNNTGG	2 cut(s)	668, 1268
PleI	GAGTC	1 cut(s)	1159
PpsI	GAGTC	1 cut(s)	1159
PpuMI	RGGWCCY	1 cut(s)	293
PsiI	TTATAA	2 cut(s)	819, 968
Psp124BI	GAGCTC	1 cut(s)	151
Psp1406I	AACGTT	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	3 cut(s)	453, 555, 692
PspFI	CCCAGC	1 cut(s)	1251
PspGI	CCWGG	3 cut(s)	453, 555, 692
PspN4I	GGNNCC	3 cut(s)	690, 1019, 1423
PspPI	GGNCC	2 cut(s)	293, 1018
PspPPI	RGGWCCY	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	688, 922
PsyI	GACNNNGTC	1 cut(s)	1323
RsaI	GTAC	4 cut(s)	115, 418, 745, 1038
RsaNI	GTAC	4 cut(s)	114, 417, 744, 1037
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	7 cut(s)	366, 434, 774, 1041, 1059, 1343, 1394
Sau96I	GGNCC	2 cut(s)	293, 1018
SchI	GAGTC	1 cut(s)	1160
ScrFI	CCNGG	5 cut(s)	239, 240, 455, 557, 694
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	91, 120
SfcI	CTRYAG	1 cut(s)	1385
SinI	GGWCC	2 cut(s)	293, 1018
SmaI	CCCGGG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	327, 386
SmoI	CTYRAG	2 cut(s)	327, 386
Sse9I	AATT	9 cut(s)	216, 301, 561, 570, 618, 828, 1122, 1283, 1373
SsiI	CCGC	3 cut(s)	281, 699, 1357
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	5 cut(s)	237, 238, 453, 555, 692
StyI	CCWWGG	3 cut(s)	867, 1262, 1336
TaaI	ACNGT	7 cut(s)	143, 186, 631, 683, 845, 1022, 1051
TaiI	ACGT	3 cut(s)	37, 876, 963
TaqI	TCGA	5 cut(s)	110, 411, 896, 1154, 1329
TasI	AATT	9 cut(s)	216, 301, 561, 570, 618, 828, 1122, 1283, 1373
TatI	WGTACW	2 cut(s)	113, 1036
Tru1I	TTAA	7 cut(s)	366, 434, 774, 1041, 1059, 1343, 1394
Tru9I	TTAA	7 cut(s)	366, 434, 774, 1041, 1059, 1343, 1394
TscAI	CASTG	6 cut(s)	189, 348, 532, 636, 766, 940
TseFI	GTSAC	1 cut(s)	974
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	3 cut(s)	152, 509, 1185
TspGWI	ACGGA	2 cut(s)	1230, 1332
TspMI	CCCGGG	1 cut(s)	238
TspRI	CASTG	6 cut(s)	189, 348, 532, 636, 766, 940
Tth111I	GACNNNGTC	1 cut(s)	1323
Van91I	CCANNNNNTGG	2 cut(s)	668, 1268
VpaK11BI	GGWCC	2 cut(s)	293, 1018
XagI	CCTNNNNNAGG	1 cut(s)	1095
XapI	RAATTY	2 cut(s)	216, 561
XmaI	CCCGGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.