Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010503

Physical Location & Seq

Genomic Coordinates Reverse (-)

59731540 .. 59734873

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCGTCTCACGGGGATCTGGACCGTCAGATCGAGCATCTGATGGAGTGCAAGACGTTGCCGGAGGCGGAGGTGAAGATGCTGTGCGAGCAAGCGAGGGCGATCCTGGTGGAGGAGTGGAACGTGCAACCGGTCAAGTGCCCGGTTACGGTGTGTGGGGATATACACGGCCAGTTCTACGACCTCATTGAGCTTTTTCGGATAGGAGGCAACGCTCCTGATACTAATTACCTTTTCATGGGTGATTATGTAGATCGTGGATATTATTCTGTGGAGACTGTCACACTTCTGGTGGCTCTGAAAGTTCGTTATAGAGATAGAATTACAATCCTGAGAGGAAATCATGAGAGTCGGCAAATTACTCAAGTGTATGGTTTCTACGATGAGTGTTTAAGAAAATACGGAAATGCCAATGTCTGGAAGTACTTTACTGACTTATTTGATTATCTTCCCCTCACAGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGGGGCCTTTCACCATCGTTGGACACATTGGACAATATCCGAGCCTTGGACCGTATCCAGGAGGTTCCACATGAAGGACCAATGTGCGATCTCTTATGGTCTGATCCTGATGACCGCTGTGGTTGGGGAATATCGCCACGTGGTGCTGGTTATACATTTGGACAGGATATAGCTGCTCAGTTTAATCATACCAATGGACTCAGCCTGATTTCAAGAGCTCATCAGCTAGTCATGGAAGGATACAACTGGTGCCAGGAAAAGAACGTCGTGACTGTTTTTAGTGCTCCAAACTATTGTTATCGGTGTGGGAATATGGCTGCAATTTTGGAAATTGGGGAGAATATGGACCAGAATTTTCTACAGTTTGACCCAGCTCCTCGTCAAATTGAGCCTGACAACACACGCAAGACTCCAGATTATTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin_like

Protein Analysis

306

Amino Acids

35.08

Weight (kDa)

4.85

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	48 - 241	1.1e-46	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28340
fragaria_vesca	FvH4_3g08800 FvH4_3g08800 FvH4_3g08800 FvH4_3g08800
malus_domestica	MD10G1291000.v1.1
prunus_persica	Prupe.4G051100_v2.0.a1
pyrus_communis	pycom10g24320
rosa_chinensis	RchiOBHm_Chr5g0008961
rosa_laevigata	RLG00000031620
rosa_multiflora	Rmu_sc0004677.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067060 Rroxscaffold_1G00067690 Rroxscaffold_4G00319870
rosa_rugosa	Rorug04G0440600 Rorug04G0440700
rosa_samantha	Rh5AG069300 Rh5BG066100 Rh5CG077200 Rh5DG065200
rosa_wichuraiana	Rw5G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	741
AccB7I	CCANNNNNTGG	1 cut(s)	417
AciI	CCGC	2 cut(s)	68, 607
AclWI	GGATC	3 cut(s)	24, 97, 590
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	844
AcvI	CACGTG	1 cut(s)	632
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	705
AjnI	CCWGG	3 cut(s)	105, 549, 744
AluBI	AGCT	5 cut(s)	193, 665, 710, 718, 866
AluI	AGCT	5 cut(s)	193, 665, 710, 718, 866
Alw21I	GWGCWC	2 cut(s)	712, 778
Alw26I	GTCTC	2 cut(s)	12, 269
AlwI	GGATC	3 cut(s)	24, 97, 590
AoxI	GGCC	2 cut(s)	169, 496
ApeKI	GCWGC	2 cut(s)	665, 809
ApoI	RAATTY	1 cut(s)	844
AsiGI	ACCGGT	1 cut(s)	130
AspS9I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	85, 254, 495
AvaII	GGWCC	4 cut(s)	22, 541, 569, 838
BaeGI	GKGCMC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	712
BbrPI	CACGTG	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	712, 778
BbvI	GCAGC	2 cut(s)	652, 796
BccI	CCATC	2 cut(s)	37, 514
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	3 cut(s)	107, 551, 746
BciVI	GTATCC	2 cut(s)	557, 725
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	12, 269
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	851
BfuI	GTATCC	2 cut(s)	557, 725
BisI	GCNGC	2 cut(s)	666, 810
BlsI	GCNGC	2 cut(s)	667, 811
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	4 cut(s)	107, 143, 551, 746
Bme18I	GGWCC	4 cut(s)	22, 541, 569, 838
BmgT120I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
BmiI	GGNNCC	3 cut(s)	497, 558, 743
BmrFI	CCNGG	4 cut(s)	107, 143, 551, 746
BmsI	GCATC	2 cut(s)	46, 69
BpmI	CTGGAG	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	172, 743
BseBI	CCWGG	3 cut(s)	107, 551, 746
BseDI	CCNNGG	1 cut(s)	537
BseLI	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
BseMII	CTCAG	3 cut(s)	323, 683, 706
BseNI	ACTGG	2 cut(s)	172, 743
BseRI	GAGGAG	2 cut(s)	128, 858
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	652, 796
BseYI	CCCAGC	1 cut(s)	862
BshFI	GGCC	2 cut(s)	171, 498
BshNI	GGYRCC	1 cut(s)	741
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	2 cut(s)	712, 778
BsiSI	CCGG	3 cut(s)	62, 131, 143
BslI	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
BsmAI	GTCTC	2 cut(s)	12, 269
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	171, 498
Bsp1286I	GDGCHC	3 cut(s)	143, 712, 778
Bsp143I	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
BspACI	CCGC	2 cut(s)	68, 607
BspANI	GGCC	2 cut(s)	171, 498
BspCNI	CTCAG	3 cut(s)	324, 682, 705
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	497, 558, 743
BspPI	GGATC	3 cut(s)	24, 97, 590
BspT107I	GGYRCC	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	172, 743
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	3 cut(s)	107, 551, 746
Bst4CI	ACNGT	6 cut(s)	26, 151, 280, 545, 766, 855
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	89, 93
BstDEI	CTNAG	3 cut(s)	332, 669, 692
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstKTI	GATC	6 cut(s)	19, 33, 105, 256, 583, 598
BstMAI	GTCTC	2 cut(s)	12, 269
BstMBI	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	3 cut(s)	107, 551, 746
BstSCI	CCNGG	4 cut(s)	105, 141, 549, 744
BstSFI	CTRYAG	1 cut(s)	851
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	652, 796
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuI	GTATCC	2 cut(s)	557, 725
BsuRI	GGCC	2 cut(s)	171, 498
Cac8I	GCNNGC	2 cut(s)	89, 93
CciI	TCATGA	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
Csp6I	GTAC	1 cut(s)	424
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	5 cut(s)	238, 344, 491, 563, 724
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	332, 669, 692
DpnI	GATC	6 cut(s)	18, 32, 104, 255, 582, 597
DpnII	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	712
Eco47I	GGWCC	4 cut(s)	22, 541, 569, 838
Eco53kI	GAGCTC	1 cut(s)	710
Eco72I	CACGTG	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	710
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	105, 549, 744
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	5 cut(s)	241, 347, 494, 566, 727
FatI	CATG	5 cut(s)	237, 343, 490, 562, 723
Fnu4HI	GCNGC	2 cut(s)	666, 810
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	2 cut(s)	666, 810
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	2 cut(s)	666, 810
GsaI	CCCAGC	1 cut(s)	866
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	2 cut(s)	171, 498
HapII	CCGG	3 cut(s)	62, 131, 143
Hin1II	CATG	5 cut(s)	241, 347, 494, 566, 727
HinfI	GANTC	4 cut(s)	349, 472, 690, 901
HpaII	CCGG	3 cut(s)	62, 131, 143
HphI	GGTGA	3 cut(s)	85, 254, 495
Hpy188I	TCNGA	7 cut(s)	30, 42, 201, 300, 477, 533, 595
Hpy188III	TCNNGA	9 cut(s)	20, 218, 331, 344, 418, 599, 705, 760, 905
Hpy99I	CGWCG	1 cut(s)	761
HpyAV	CCTTC	2 cut(s)	560, 722
HpyCH4III	ACNGT	6 cut(s)	26, 151, 280, 545, 766, 855
HpyCH4IV	ACGT	4 cut(s)	56, 123, 631, 756
HpyCH4V	TGCA	4 cut(s)	51, 127, 490, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	3 cut(s)	332, 669, 692
HpySE526I	ACGT	4 cut(s)	56, 123, 631, 756
Hsp92II	CATG	5 cut(s)	241, 347, 494, 566, 727
Kzo9I	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
LmnI	GCTCC	3 cut(s)	220, 781, 871
Lsp1109I	GCAGC	2 cut(s)	652, 796
LweI	GCATC	2 cut(s)	46, 69
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	4 cut(s)	56, 123, 631, 756
MaeIII	GTNAC	3 cut(s)	145, 280, 760
MalI	GATC	6 cut(s)	18, 32, 104, 255, 582, 597
MboI	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
MboII	GAAGA	2 cut(s)	88, 440
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	3 cut(s)	143, 712, 778
MluCI	AATT	7 cut(s)	226, 321, 357, 813, 822, 844, 876
MlyI	GAGTC	4 cut(s)	358, 481, 684, 895
MmeI	TCCRAC	1 cut(s)	492
MseI	TTAA	2 cut(s)	392, 675
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	3 cut(s)	62, 131, 143
MspR9I	CCNGG	4 cut(s)	107, 143, 551, 746
MvaI	CCWGG	3 cut(s)	107, 551, 746
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
NlaIII	CATG	5 cut(s)	241, 347, 494, 566, 727
NlaIV	GGNNCC	3 cut(s)	497, 558, 743
NmuCI	GTSAC	2 cut(s)	280, 760
PagI	TCATGA	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	417
PfoI	TCCNGGA	1 cut(s)	549
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	667, 811
PleI	GAGTC	4 cut(s)	357, 480, 684, 895
PmaCI	CACGTG	1 cut(s)	632
PmlI	CACGTG	1 cut(s)	632
PpsI	GAGTC	4 cut(s)	357, 480, 684, 895
Ppu21I	YACGTR	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	712
Psp6I	CCWGG	3 cut(s)	105, 549, 744
PspCI	CACGTG	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	862
PspGI	CCWGG	3 cut(s)	105, 549, 744
PspN4I	GGNNCC	3 cut(s)	497, 558, 743
PspPI	GGNCC	5 cut(s)	22, 496, 541, 569, 838
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	712
SaqAI	TTAA	2 cut(s)	392, 675
SatI	GCNGC	2 cut(s)	666, 810
Sau3AI	GATC	6 cut(s)	16, 30, 102, 253, 580, 595
Sau96I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	4 cut(s)	358, 481, 684, 895
ScrFI	CCNGG	4 cut(s)	107, 143, 551, 746
SduI	GDGCHC	3 cut(s)	143, 712, 778
SfaNI	GCATC	2 cut(s)	46, 69
SfcI	CTRYAG	1 cut(s)	851
SinI	GGWCC	4 cut(s)	22, 541, 569, 838
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	7 cut(s)	226, 321, 357, 813, 822, 844, 876
SsiI	CCGC	2 cut(s)	68, 607
SspMI	CTAG	1 cut(s)	719
SstI	GAGCTC	1 cut(s)	712
StyD4I	CCNGG	4 cut(s)	105, 141, 549, 744
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	6 cut(s)	26, 151, 280, 545, 766, 855
TaiI	ACGT	4 cut(s)	59, 126, 634, 759
TaqI	TCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	226, 321, 357, 813, 822, 844, 876
TatI	WGTACW	1 cut(s)	423
Tru1I	TTAA	2 cut(s)	392, 675
Tru9I	TTAA	2 cut(s)	392, 675
TseFI	GTSAC	2 cut(s)	280, 760
TseI	GCWGC	2 cut(s)	665, 809
Tsp45I	GTSAC	2 cut(s)	280, 760
TspDTI	ATGAA	2 cut(s)	226, 579
TspGWI	ACGGA	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	4 cut(s)	22, 541, 569, 838
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	844
XspI	CTAG	1 cut(s)	719
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.