Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010503

Physical Location & Seq

Genomic Coordinates Forward (+)

5863107 .. 5869059

Gene Structure 5953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG069300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGGTGAGGACGATTCTTCATCTTCTTCTTCTTCTTCAATGGCTTCTCGTGTTCTGCTCCGTTTTCTCTCCGACTTCGGCGAAGCGCGCGCCTTATGCGATGCGCATAAACTGTGGGGCTCGTCATGATGTCCATACAGAGCCAACCAATACACTCTGGTATAGAGATTTTGGATATACAGGGGGAATTCCTAGTAATGCTTCTCTCCCGGGTTATGTCAGTCCTCACCTTGATACGCTGAGATATTTTCCGCTGTCTGAAGGTCCTGAAAATTGTTACCATATCAATAGAGTTCCTCAAGGACACTACTCAGTGAGGATTTTCTTTGGATTGGTTAAATCAAAAAGCGATGACCTTGAGCCTTTGTTTGATATTTCTGTCGAGGGTACTCTGATTACTTCTTTAAAATCTGGTTGGAGCAACCAGGATGATCAAGTTTTTGCCGAAGCACAAGTGTTTCTTACTGATGGCTCTGTTTCTATCTGCTTTCATAGCACTGGTCATGGTGATCCAGCAATCCTTGCCCTGGAAATTCTTCAAATTGATGATCAAGCGTACCATTTCAACCAACAATCTGGTCAAGGAATAATTCTTAGAACAGTGTCGAGATTGAGTTGTGGTGATGGAAAGCCAAAGTTTGGTGCTGACTACGGTGGGGATCCGTGGGGCGGTGATAGGTTTTGGAGACCTACTAAAACCTTTGGTCAGAGTGGTACTATGGCAATATCCACTGAAACCAGCATTAAGCAGGTTTCAAAACCACCAAACTTTTATCCAGCAGGGCTTTATAAGAAAGCAATTGTGAGTTCCGACAGTCAGCCCGATTTAGAATATACCATGGACGTTGATCCTAATAGAAACTACTCGATCTGGTTACACTTTGCTGAGATAGATCAAGCGATCACTGGTGTAGGTCAGAGAGTATTTGACGTTATTATAAATGGTGAAATTGCATTTCCAGATGTGGATATTGTCAAACTGAGTGGGGACCGTTATTCTGCTCTTGTACTTAACACAACTGTTGCTGTTAATGGGAGGAGTTTGACAATAACCTTGCAACCTACAAAAGGTGATCATGCCATAATCTGTGCAATTGAGATATTTGAAATTATATTCGCCGAGTCAAAAACTTTACCAGATGAAGTAAAGGCTTTACAAACATTGAAGACTACATTAGGGCTTCCTGTTCGGTTGGGGTGGAATGGTGATCCGTGTGTTCCCCAGCAACACCCATGGAGTGGAGCAGATTGCCAATTGGATAGAAATAGCAACAAATGGATTATTGACGGACTGGGTCTTGACAACCAAGGTTTAAAGGGATTTTTGCGGGATGACATTTCAAAATTGCGTCATCTACAGAGCTTAAATCTTAGTGGAAATAATATACATGGAGCCATTCCAACCTCGCTTGGAGCAATACCAAGTTTGGAAGTTTTGGACCTCTCATACAATTCCTTCAATGGATCAATCCCTGAAACACTCGGACAGTTGACCTCGTTAAAAAGACTGTGGGATATTGTCATGCTTCTTTTTAAACCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin_like

Protein Analysis

514

Amino Acids

56.78

Weight (kDa)

5.77

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	36 - 369	7e-56	Malectin-like domain
Malectin	PF11721	221 - 361	4.9e-16	Malectin domain
LRR_14	PF23598	442 - 506	2.9e-06	Leucine-rich repeat region
LRR_8	PF13855	450 - 503	5.7e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28340
fragaria_vesca	FvH4_3g08800 FvH4_3g08800 FvH4_3g08800 FvH4_3g08800
malus_domestica	MD10G1291000.v1.1
prunus_persica	Prupe.4G051100_v2.0.a1
pyrus_communis	pycom10g24320
rosa_chinensis	RchiOBHm_Chr5g0008961
rosa_laevigata	RLG00000031620
rosa_multiflora	Rmu_sc0004677.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067060 Rroxscaffold_1G00067690 Rroxscaffold_4G00319870
rosa_rugosa	Rorug04G0440600 Rorug04G0440700
rosa_samantha	Rh5AG069300 Rh5BG066100 Rh5CG077200 Rh5DG065200
rosa_wichuraiana	Rw5G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	789, 938
Acc16I	TGCGCA	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	739
AccB7I	CCANNNNNTGG	2 cut(s)	638, 1238
AccII	CGCG	2 cut(s)	87, 89
AciI	CCGC	3 cut(s)	251, 669, 1327
AclWI	GGATC	6 cut(s)	503, 653, 666, 842, 1202, 1471
AcsI	RAATTY	2 cut(s)	186, 531
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	4 cut(s)	388, 557, 715, 1008
AfiI	CCNNNNNNNGG	5 cut(s)	526, 638, 668, 1067, 1238
AgsI	TTSAA	8 cut(s)	38, 539, 565, 756, 1106, 1165, 1341, 1459
AjnI	CCWGG	2 cut(s)	423, 525
AluBI	AGCT	1 cut(s)	1362
AluI	AGCT	1 cut(s)	1362
Alw26I	GTCTC	1 cut(s)	679
AlwI	GGATC	6 cut(s)	503, 653, 666, 842, 1202, 1471
Ama87I	CYCGRG	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	186, 531
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	4 cut(s)	87, 89, 91, 105
AspS9I	GGNCC	3 cut(s)	263, 988, 1438
AsuC2I	CCSGG	2 cut(s)	209, 210
AsuHPI	GGTGA	8 cut(s)	16, 218, 518, 632, 683, 956, 1082, 1217
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	3 cut(s)	263, 988, 1438
BamHI	GGATCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	1172
BccI	CCATC	2 cut(s)	461, 617
BciT130I	CCWGG	2 cut(s)	425, 527
BclI	TGATCA	3 cut(s)	430, 547, 1072
BcnI	CCSGG	2 cut(s)	209, 210
BcoDI	GTCTC	1 cut(s)	679
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	1355
BfuAI	ACCTGC	1 cut(s)	739
Bme1390I	CCNGG	4 cut(s)	209, 210, 425, 527
Bme18I	GGWCC	3 cut(s)	263, 988, 1438
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	263, 988, 1438
BmiI	GGNNCC	3 cut(s)	660, 989, 1393
BmrFI	CCNGG	4 cut(s)	209, 210, 425, 527
BmrI	ACTGGG	1 cut(s)	1301
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	1301
BpiI	GAAGAC	1 cut(s)	1172
BpuEI	CTTGAG	2 cut(s)	282, 377
BpuMI	CCSGG	2 cut(s)	209, 210
BsaI	GGTCTC	1 cut(s)	679
BsaJI	CCNNGG	6 cut(s)	208, 525, 662, 837, 1232, 1306
Bsc4I	CCNNNNNNNGG	5 cut(s)	526, 638, 668, 1067, 1238
Bse1I	ACTGG	3 cut(s)	502, 910, 1296
BseBI	CCWGG	2 cut(s)	425, 527
BseDI	CCNNGG	6 cut(s)	208, 525, 662, 837, 1232, 1306
BseGI	GGATG	2 cut(s)	433, 1336
BseLI	CCNNNNNNNGG	5 cut(s)	526, 638, 668, 1067, 1238
BseMII	CTCAG	4 cut(s)	230, 324, 876, 971
BseNI	ACTGG	3 cut(s)	502, 910, 1296
BsePI	GCGCGC	2 cut(s)	85, 87
BseRI	GAGGAG	1 cut(s)	1051
BseYI	CCCAGC	1 cut(s)	1221
Bsh1236I	CGCG	2 cut(s)	87, 89
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	5 cut(s)	526, 638, 668, 1067, 1238
BsmAI	GTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	1001
Bso31I	GGTCTC	1 cut(s)	679
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp19I	CCATGG	2 cut(s)	837, 1232
BspACI	CCGC	3 cut(s)	251, 669, 1327
BspCNI	CTCAG	4 cut(s)	231, 323, 877, 972
BspFNI	CGCG	2 cut(s)	87, 89
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	660, 989, 1393
BspMI	ACCTGC	1 cut(s)	739
BspPI	GGATC	6 cut(s)	503, 653, 666, 842, 1202, 1471
BspTNI	GGTCTC	1 cut(s)	679
BsrI	ACTGG	3 cut(s)	502, 910, 1296
BssECI	CCNNGG	6 cut(s)	208, 525, 662, 837, 1232, 1306
BssHII	GCGCGC	2 cut(s)	85, 87
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	3 cut(s)	837, 1232, 1306
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	425, 527
Bst4CI	ACNGT	8 cut(s)	113, 601, 653, 815, 992, 1021, 1488, 1509
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	87, 89
BstDEI	CTNAG	7 cut(s)	239, 310, 593, 885, 980, 1370, 1539
BstDSI	CCRYGG	3 cut(s)	662, 837, 1232
BstENI	CCTNNNNNAGG	1 cut(s)	1065
BstF5I	GGATG	2 cut(s)	433, 1336
BstFNI	CGCG	2 cut(s)	87, 89
BstHHI	GCGC	4 cut(s)	87, 89, 91, 105
BstMAI	GTCTC	1 cut(s)	679
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 492, 521
BstNI	CCWGG	2 cut(s)	425, 527
BstSCI	CCNGG	4 cut(s)	207, 208, 423, 525
BstSFI	CTRYAG	1 cut(s)	1355
BstUI	CGCG	2 cut(s)	87, 89
BstV2I	GAAGAC	1 cut(s)	1172
BstX2I	RGATCY	1 cut(s)	658
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	658
BtgI	CCRYGG	3 cut(s)	662, 837, 1232
BtgZI	GCGATG	2 cut(s)	113, 363
BtsCI	GGATG	2 cut(s)	433, 1336
BtsIMutI	CAGTG	5 cut(s)	318, 495, 606, 729, 903
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	2 cut(s)	87, 89
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	4 cut(s)	87, 89, 91, 105
Cfr13I	GGNCC	3 cut(s)	263, 988, 1438
Cfr9I	CCCGGG	1 cut(s)	208
CseI	GACGC	1 cut(s)	1337
Csp6I	GTAC	4 cut(s)	387, 556, 714, 1007
CspCI	CAANNNNNGTGG	2 cut(s)	964, 999
CviAII	CATG	7 cut(s)	125, 503, 838, 1076, 1233, 1388, 1522
CviQI	GTAC	4 cut(s)	387, 556, 714, 1007
DdeI	CTNAG	7 cut(s)	239, 310, 593, 885, 980, 1370, 1539
DraI	TTTAAA	3 cut(s)	405, 1314, 1534
Eco130I	CCWWGG	3 cut(s)	837, 1232, 1306
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	679
Eco47I	GGWCC	3 cut(s)	263, 988, 1438
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	1065
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	423, 525
EcoT14I	CCWWGG	3 cut(s)	837, 1232, 1306
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	3 cut(s)	837, 1232, 1306
FaeI	CATG	7 cut(s)	128, 506, 841, 1079, 1236, 1391, 1525
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	7 cut(s)	124, 502, 837, 1075, 1232, 1387, 1521
FauI	CCCGC	1 cut(s)	1320
FbaI	TGATCA	3 cut(s)	430, 547, 1072
FokI	GGATG	2 cut(s)	440, 1343
FriOI	GRGCYC	1 cut(s)	121
FspAI	RTGCGCAY	1 cut(s)	104
FspBI	CTAG	1 cut(s)	192
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	4 cut(s)	86, 88, 90, 104
GsaI	CCCAGC	1 cut(s)	1225
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	1337
HhaI	GCGC	4 cut(s)	87, 89, 91, 105
Hin1II	CATG	7 cut(s)	128, 506, 841, 1079, 1236, 1391, 1525
Hin6I	GCGC	4 cut(s)	85, 87, 89, 103
HinP1I	GCGC	4 cut(s)	85, 87, 89, 103
HincII	GTYRAC	1 cut(s)	1491
HindII	GTYRAC	1 cut(s)	1491
HinfI	GANTC	2 cut(s)	13, 1121
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	8 cut(s)	16, 218, 518, 632, 683, 956, 1082, 1217
Hpy166II	GTNNAC	1 cut(s)	1491
Hpy188I	TCNGA	7 cut(s)	72, 259, 393, 708, 811, 918, 1484
Hpy188III	TCNNGA	5 cut(s)	125, 266, 606, 959, 1298
Hpy8I	GTNNAC	1 cut(s)	1491
HpyAV	CCTTC	2 cut(s)	254, 1465
HpyCH4III	ACNGT	8 cut(s)	113, 601, 653, 815, 992, 1021, 1488, 1509
HpyCH4IV	ACGT	2 cut(s)	843, 930
HpyCH4V	TGCA	3 cut(s)	953, 1057, 1091
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 492, 521
HpyF3I	CTNAG	7 cut(s)	239, 310, 593, 885, 980, 1370, 1539
HpySE526I	ACGT	2 cut(s)	843, 930
Hsp92II	CATG	7 cut(s)	128, 506, 841, 1079, 1236, 1391, 1525
HspAI	GCGC	4 cut(s)	85, 87, 89, 103
Ksp22I	TGATCA	3 cut(s)	430, 547, 1072
LmnI	GCTCC	5 cut(s)	62, 417, 1241, 1391, 1412
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	843, 930
MaeIII	GTNAC	2 cut(s)	275, 873
MboII	GAAGA	8 cut(s)	8, 14, 17, 20, 23, 26, 527, 1177
MfeI	CAATTG	3 cut(s)	798, 1092, 1253
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	1130
MmeI	TCCRAC	4 cut(s)	95, 395, 834, 1424
MnlI	CCTC	8 cut(s)	234, 306, 309, 376, 1029, 1414, 1451, 1504
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	9 cut(s)	336, 404, 744, 1011, 1029, 1313, 1364, 1499, 1533
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	4 cut(s)	209, 210, 425, 527
MunI	CAATTG	3 cut(s)	798, 1092, 1253
MvaI	CCWGG	2 cut(s)	425, 527
MvnI	CGCG	2 cut(s)	87, 89
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 492, 521
NciI	CCSGG	2 cut(s)	209, 210
NcoI	CCATGG	2 cut(s)	837, 1232
NlaIII	CATG	7 cut(s)	128, 506, 841, 1079, 1236, 1391, 1525
NlaIV	GGNNCC	3 cut(s)	660, 989, 1393
NmeAIII	GCCGAG	1 cut(s)	1144
NsbI	TGCGCA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	124
PauI	GCGCGC	2 cut(s)	85, 87
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	1293
PflMI	CCANNNNNTGG	2 cut(s)	638, 1238
PleI	GAGTC	1 cut(s)	1129
PpsI	GAGTC	1 cut(s)	1129
PpuMI	RGGWCCY	1 cut(s)	263
PsiI	TTATAA	2 cut(s)	789, 938
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	423, 525
PspFI	CCCAGC	1 cut(s)	1221
PspGI	CCWGG	2 cut(s)	423, 525
PspN4I	GGNNCC	3 cut(s)	660, 989, 1393
PspPI	GGNCC	3 cut(s)	263, 988, 1438
PspPPI	RGGWCCY	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	658
PsyI	GACNNNGTC	1 cut(s)	1293
PteI	GCGCGC	2 cut(s)	85, 87
RsaI	GTAC	4 cut(s)	388, 557, 715, 1008
RsaNI	GTAC	4 cut(s)	387, 556, 714, 1007
SaqAI	TTAA	9 cut(s)	336, 404, 744, 1011, 1029, 1313, 1364, 1499, 1533
Sau96I	GGNCC	3 cut(s)	263, 988, 1438
SchI	GAGTC	1 cut(s)	1130
ScrFI	CCNGG	4 cut(s)	209, 210, 425, 527
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	1355
SinI	GGWCC	3 cut(s)	263, 988, 1438
SmaI	CCCGGG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	297, 356
SmoI	CTYRAG	2 cut(s)	297, 356
SsiI	CCGC	3 cut(s)	251, 669, 1327
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	4 cut(s)	207, 208, 423, 525
StyI	CCWWGG	3 cut(s)	837, 1232, 1306
TaaI	ACNGT	8 cut(s)	113, 601, 653, 815, 992, 1021, 1488, 1509
TaiI	ACGT	2 cut(s)	846, 933
TaqI	TCGA	3 cut(s)	381, 605, 866
TatI	WGTACW	1 cut(s)	1006
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	9 cut(s)	336, 404, 744, 1011, 1029, 1313, 1364, 1499, 1533
Tru9I	TTAA	9 cut(s)	336, 404, 744, 1011, 1029, 1313, 1364, 1499, 1533
TscAI	CASTG	5 cut(s)	318, 502, 606, 736, 910
TspDTI	ATGAA	3 cut(s)	8, 479, 1155
TspGWI	ACGGA	4 cut(s)	49, 651, 1200, 1302
TspMI	CCCGGG	1 cut(s)	208
TspRI	CASTG	5 cut(s)	318, 502, 606, 736, 910
Tth111I	GACNNNGTC	1 cut(s)	1293
Van91I	CCANNNNNTGG	2 cut(s)	638, 1238
VpaK11BI	GGWCC	3 cut(s)	263, 988, 1438
XagI	CCTNNNNNAGG	1 cut(s)	1065
XapI	RAATTY	2 cut(s)	186, 531
XmaI	CCCGGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.