Rroxscaffold_5G00347010

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009020
Physical Location & Seq
Reverse (-)
18180612 .. 18184826
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347010.1

Sequence Viewer

Length: 2172 bp
ATGAAGAAGGGAAGAAGGAGGATATCTCAGCAGGAGCGGCTGATCCGTCATCTGGAGCCTTTGAAGAACCTTTGTCTGGACGATATTGTGAACCGACTTCGCTCTACGTACCCATCTTTTTACCAACGCATCAAGCTCCCTATTTTCACCACGAAAGTCGAGAAAACCCTAGCGTCGCTTTCCGTTAAGCAGCGCTCAATGGCCAAACAACCGCGTATCAGAAACATAGAACAAGAAGAAGAAGAAGAAGAAGAAATTGGTCATGGAAATTTCCACAAAAGGCGTCGGCTGAACTATGCTTCCAGTGAGAGCGAGGAGGATTCTGGCGAGGAGGATTCGAGCAAGGAGGATCCAGGCTTGGCCGTCTGCTGCTTGGAGTACGCCATACCCAACATACCCAACAACAAGTTGAGTTCTTTATGTTTTAGTCCGAGAGTTGTTCAGTTGAATTCGGGGATTGGAGGGGATGTGAGGTTCAGTGACTTAGGTGGGATGGAGAAAGCGCAAAACGAGCTGGAGAGGTTTGTGATGTTGCCATTTCGACATCCGGAGCTGGCGATATCGCTTGGAGTCAAGCCAGTATCTGGGGTTCTCTTGCACGGACCACCAGGTTGTGGGAAGACCAAATTGGCCCACGCCATTGCCAATGAACTCGGCATTCCATTTTATAAGATTTCTGCTACCCAGCTCGTCTCTAATGTGACAGGTTCATCCGAAGAGAATATACGAGACCTTTTTTCCAAAGCTTATAGAACGGCCCCTTCAATTGTATTTATTGATGAAATTGATGCAATTGCTACCAAAAGAGAGGATGTGCAACGTGCAATGGAGGGGCGGATCGTGACACAACTCATGATTTCCATGGATGAATCTCACAGACCTACTGTATCACCAGCTGCTCATGATGATCCAAATTCCAACTCGCAATCTTCGGATCAGAAATATCCCCATGTTCTCGTCATTGGAGCTACCAATAGGCCTGATGTTATTGACTCTGCTCTAAGGAGGCCTGGACGCTTTGAACTTGAGATTTTTTTAGGCCCTCCAGATGAAAGTGCGAGGCTCCAGATTCTCTCTTTGCTCACTCGCAATCTCACATTACAAAGTGGTTCCTTTGATCTTCTCAAAATAGCCAGGTCTACCTCCGGGTTTGTCGGAGCTGATTTGACCACCTTGGTCAACAGGGCTGGTTCCATTGCACTGGAAAGGATTGTAAACAACATGGTTGCTGCTGATGTCTCCATTCATTCTGCGTCTCCCAAGTACAATCAAGATTCTGGGCCTCAAGTACTCACTATGGCTGATTTTGAGGACGCAGTTAAAGCAGTCCAACCCTCCTTAAAAAGAGAAGGATTCGCTGCAATACCTAATGTGAAATGGGAAGACGTTGGCGGCCTAGATTCTTTAAGGGAGGACCTTTACCGTTCTATAGTTCGGCGTATTAAACATCCAGAGATCTATAAGAATTTCGGATTAGATTTAGAGACGGGATTTTTACTCTACGGGCCTCCAGGATGTGGCAAAACCCTGATTGCGAAGGCTGTTGCAAGTGAGGCAGGAGCTAATTTTATATACGTCAAGGGTGCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAACTGGCAGTCCGAACCTTGTTTACCCGTGCAAGGACGTGCTCGCCATGCATTATTTTCTTTGATGAGGTGGATGCTTTGACAACAAAGCGGGGCAGACAAGGGGGATGGGTTATTGAGCGGCTATTGAACCAGTTACTTGCAGAGTTAGATGGTGGAGATCAGCAGCAGGGTGTATTTGTTATTGGTGCTACCAATAGACCTGATGCGATGGATCCTGCTGTTTTACGGCCGGGCAGGTTTGGTAAACATATTTATGTCTCCCTGCCGAGTAGAGATGAGCGCTGTTTGATCCTAAAAGCTCTTGCAAGGAAGAAGCCTATAGATCCCAGTGTAGATCTCAATGAGATCGGTCGATGGAAGGCTCTTGAAAATTTTAGTGGAGCTGATCTCTCTGCAATGATGAATGAAGCTGCAATGGCTGCTCTTGAAGAGGGATCAACATCAATTGATGTGAGTGTGGGTTCATATACACAGACTATTAAGAAGTGTCACCTTGAACAATCCGTTGCTAAAATCACACCGTCTGTAACTAATAAGGTAGCATCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

723

Amino Acids

79.75

Weight (kDa)

6.92

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvB_N PF05496 194 - 287 8.2e-08 Holliday junction DNA helicase RuvB P-loop domain
TIP49 PF06068 196 - 246 8.6e-06 TIP49 P-loop domain
AAA PF00004 197 - 347 1.3e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 372 - 408 2e-09 AAA+ lid domain
AAA PF00004 499 - 627 4.7e-43 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 650 - 690 9.2e-09 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 1845
AccB7I CCANNNNNTGG 3 cut(s) 584, 614, 1517
AccBSI CCGCTC 2 cut(s) 37, 1738
AccI GTMKAC 1 cut(s) 1139
AccII CGCG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 6 cut(s) 37, 212, 835, 1392, 1708, 1738
AcoI YGGCCR 3 cut(s) 201, 360, 1847
AcsI RAATTY 5 cut(s) 268, 448, 913, 1465, 1990
AcyI GRCGYC 1 cut(s) 283
AfaI GTAC 4 cut(s) 110, 380, 1265, 1290
AfeI AGCGCT 2 cut(s) 194, 1901
AfiI CCNNNNNNNGG 6 cut(s) 52, 76, 584, 614, 1517, 1650
AgsI TTSAA 8 cut(s) 64, 448, 765, 1022, 1747, 1988, 2048, 2117
AjiI CACGTC 1 cut(s) 1656
AjnI CCWGG 5 cut(s) 352, 607, 1009, 1133, 1510
AjuI GAANNNNNNNTTGG 4 cut(s) 240, 272, 611, 643
AloI GAACNNNNNNTCC 6 cut(s) 284, 316, 458, 490, 1611, 1643
Alw21I GWGCWC 1 cut(s) 1661
Alw26I GTCTC 6 cut(s) 697, 723, 1243, 1260, 1478, 1882
AlwNI CAGNNNCTG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 547
Aor51HI AGCGCT 2 cut(s) 194, 1901
ApeKI GCWGC 8 cut(s) 190, 369, 896, 1229, 1358, 1783, 2030, 2039
ApoI RAATTY 5 cut(s) 268, 448, 913, 1465, 1990
AspLEI GCGC 3 cut(s) 195, 505, 1902
AspS9I GGNCC 7 cut(s) 602, 631, 757, 1040, 1280, 1414, 1505
AsuC2I CCSGG 2 cut(s) 1147, 1851
AsuHPI GGTGA 3 cut(s) 139, 882, 2102
AvaII GGWCC 2 cut(s) 602, 1414
BalI TGGCCA 1 cut(s) 203
BamHI GGATCC 2 cut(s) 349, 1831
BarI GAAGNNNNNNTAC 2 cut(s) 708, 740
BbsI GAAGAC 2 cut(s) 626, 1389
Bbv12I GWGCWC 1 cut(s) 1661
BbvI GCAGC 8 cut(s) 202, 356, 883, 1216, 1345, 1795, 2017, 2026
BccI CCATC 6 cut(s) 121, 487, 1719, 1763, 1822, 1968
BceAI ACGGC 3 cut(s) 347, 771, 1862
BciT130I CCWGG 5 cut(s) 354, 609, 1011, 1135, 1512
BcnI CCSGG 2 cut(s) 1147, 1851
BcoDI GTCTC 6 cut(s) 697, 723, 1243, 1260, 1478, 1882
BfaI CTAG 2 cut(s) 170, 1397
BfmI CTRYAG 2 cut(s) 1428, 1938
BfoI RGCGCY 2 cut(s) 196, 1903
BfuAI ACCTGC 1 cut(s) 1845
BglII AGATCT 2 cut(s) 1455, 1954
BmcAI AGTACT 1 cut(s) 1290
Bme1390I CCNGG 7 cut(s) 354, 609, 1011, 1135, 1147, 1512, 1851
Bme18I GGWCC 2 cut(s) 602, 1414
BmgBI CACGTC 1 cut(s) 1656
BmgT120I GGNCC 7 cut(s) 602, 631, 757, 1040, 1280, 1414, 1505
BmiI GGNNCC 7 cut(s) 57, 351, 759, 1064, 1111, 1192, 1833
BmrFI CCNGG 7 cut(s) 354, 609, 1011, 1135, 1147, 1512, 1851
BmrI ACTGGG 1 cut(s) 1941
BmsI GCATC 4 cut(s) 138, 778, 1681, 1813
BmuI ACTGGG 1 cut(s) 1941
BpiI GAAGAC 2 cut(s) 626, 1389
BplI GAGNNNNNCTC 4 cut(s) 10, 42, 1992, 2024
BpmI CTGGAG 5 cut(s) 74, 536, 1029, 1049, 1494
BpuEI CTTGAG 2 cut(s) 1046, 1269
BpuMI CCSGG 2 cut(s) 1147, 1851
BsaAI YACGTR 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 2059
BsaHI GRCGYC 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 2 cut(s) 861, 1173
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 6 cut(s) 52, 76, 584, 614, 1517, 1650
Bse1I ACTGG 6 cut(s) 303, 578, 1206, 1626, 1750, 1947
Bse3DI GCAATG 5 cut(s) 639, 831, 1194, 2022, 2040
Bse8I GATNNNNATC 1 cut(s) 2059
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 5 cut(s) 354, 609, 1011, 1135, 1512
BseDI CCNNGG 2 cut(s) 861, 1173
BseJI GATNNNNATC 1 cut(s) 2059
BseLI CCNNNNNNNGG 6 cut(s) 52, 76, 584, 614, 1517, 1650
BseMI GCAATG 5 cut(s) 639, 831, 1194, 2022, 2040
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 6 cut(s) 303, 578, 1206, 1626, 1750, 1947
BseRI GAGGAG 2 cut(s) 329, 344
BseX3I CGGCCG 1 cut(s) 1847
BseXI GCAGC 8 cut(s) 202, 356, 883, 1216, 1345, 1795, 2017, 2026
BseYI CCCAGC 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 2 cut(s) 1850, 1972
BsiEI CGRYCG 2 cut(s) 1850, 1972
BsiHKAI GWGCWC 1 cut(s) 1661
BsiSI CCGG 3 cut(s) 548, 1146, 1850
BslI CCNNNNNNNGG 6 cut(s) 52, 76, 584, 614, 1517, 1650
BsmAI GTCTC 6 cut(s) 697, 723, 1243, 1260, 1478, 1882
BsmBI CGTCTC 3 cut(s) 697, 1260, 1478
BsmI GAATGC 1 cut(s) 657
Bso31I GGTCTC 1 cut(s) 723
Bsp1286I GDGCHC 1 cut(s) 1661
Bsp13I TCCGGA 1 cut(s) 547
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 6 cut(s) 37, 212, 835, 1392, 1708, 1738
BspCNI CTCAG 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 1 cut(s) 214
BspHI TCATGA 2 cut(s) 852, 901
BspLI GGNNCC 7 cut(s) 57, 351, 759, 1064, 1111, 1192, 1833
BspMI ACCTGC 1 cut(s) 1845
BspTNI GGTCTC 1 cut(s) 723
BsrBI CCGCTC 2 cut(s) 37, 1738
BsrDI GCAATG 5 cut(s) 639, 831, 1194, 2022, 2040
BsrI ACTGG 6 cut(s) 303, 578, 1206, 1626, 1750, 1947
BssECI CCNNGG 2 cut(s) 861, 1173
BssNI GRCGYC 1 cut(s) 283
BssT1I CCWWGG 2 cut(s) 861, 1173
Bst2UI CCWGG 5 cut(s) 354, 609, 1011, 1135, 1512
Bst4CI ACNGT 3 cut(s) 886, 1424, 2142
Bst6I CTCTTC 2 cut(s) 711, 2043
BstACI GRCGYC 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 2039
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 555, 1661
BstDEI CTNAG 3 cut(s) 27, 484, 1001
BstDSI CCRYGG 1 cut(s) 861
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 2 cut(s) 196, 1903
BstHHI GCGC 3 cut(s) 195, 505, 1902
BstMAI GTCTC 6 cut(s) 697, 723, 1243, 1260, 1478, 1882
BstMCI CGRYCG 2 cut(s) 1850, 1972
BstMWI GCNNNNNNNGC 7 cut(s) 37, 511, 1322, 1553, 1665, 2036, 2039
BstNI CCWGG 5 cut(s) 354, 609, 1011, 1135, 1512
BstSCI CCNGG 7 cut(s) 352, 607, 1009, 1133, 1145, 1510, 1849
BstSFI CTRYAG 2 cut(s) 1428, 1938
BstSNI TACGTA 1 cut(s) 108
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 8 cut(s) 202, 356, 883, 1216, 1345, 1795, 2017, 2026
BstV2I GAAGAC 2 cut(s) 626, 1389
BstX2I RGATCY 5 cut(s) 349, 1455, 1831, 1942, 1954
BstXI CCANNNNNNTGG 1 cut(s) 1201
BstYI RGATCY 5 cut(s) 349, 1455, 1831, 1942, 1954
BstZI CGGCCG 1 cut(s) 1847
BtgI CCRYGG 1 cut(s) 861
BtgZI GCGATG 1 cut(s) 1841
BtrI CACGTC 1 cut(s) 1656
BtsIMutI CAGTG 4 cut(s) 310, 484, 1199, 1954
BveI ACCTGC 1 cut(s) 1845
Cac8I GCNNGC 2 cut(s) 555, 1661
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 2 cut(s) 852, 901
CfoI GCGC 3 cut(s) 195, 505, 1902
Cfr13I GGNCC 7 cut(s) 602, 631, 757, 1040, 1280, 1414, 1505
CseI GACGC 5 cut(s) 162, 272, 1023, 1242, 1322
CsiI ACCWGGT 1 cut(s) 607
Csp6I GTAC 4 cut(s) 109, 379, 1264, 1289
CviAII CATG 7 cut(s) 263, 853, 862, 902, 950, 1222, 1665
CviQI GTAC 4 cut(s) 109, 379, 1264, 1289
DdeI CTNAG 3 cut(s) 27, 484, 1001
EaeI YGGCCR 3 cut(s) 201, 360, 1847
EagI CGGCCG 1 cut(s) 1847
Eam1104I CTCTTC 2 cut(s) 711, 2043
EarI CTCTTC 2 cut(s) 711, 2043
EciI GGCGGA 1 cut(s) 850
EclXI CGGCCG 1 cut(s) 1847
Eco105I TACGTA 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 861, 1173
Eco147I AGGCCT 2 cut(s) 979, 1009
Eco31I GGTCTC 1 cut(s) 723
Eco32I GATATC 2 cut(s) 24, 561
Eco47I GGWCC 2 cut(s) 602, 1414
Eco47III AGCGCT 2 cut(s) 194, 1901
Eco52I CGGCCG 1 cut(s) 1847
EcoO109I RGGNCCY 2 cut(s) 1040, 1414
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 5 cut(s) 352, 607, 1009, 1133, 1510
EcoRV GATATC 2 cut(s) 24, 561
EcoT14I CCWWGG 2 cut(s) 861, 1173
EcoT22I ATGCAT 1 cut(s) 1670
ErhI CCWWGG 2 cut(s) 861, 1173
Esp3I CGTCTC 3 cut(s) 697, 1260, 1478
FaeI CATG 7 cut(s) 266, 856, 865, 905, 953, 1225, 1668
FatI CATG 7 cut(s) 262, 852, 861, 901, 949, 1221, 1664
FauI CCCGC 1 cut(s) 1701
FblI GTMKAC 1 cut(s) 1139
FspBI CTAG 2 cut(s) 170, 1397
GlaI GCGC 3 cut(s) 194, 504, 1901
GsaI CCCAGC 1 cut(s) 688
GsuI CTGGAG 5 cut(s) 74, 536, 1029, 1049, 1494
HaeII RGCGCY 2 cut(s) 196, 1903
HapII CCGG 3 cut(s) 548, 1146, 1850
HgaI GACGC 5 cut(s) 162, 272, 1023, 1242, 1322
HhaI GCGC 3 cut(s) 195, 505, 1902
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 7 cut(s) 266, 856, 865, 905, 953, 1225, 1668
Hin6I GCGC 3 cut(s) 193, 503, 1900
HinP1I GCGC 3 cut(s) 193, 503, 1900
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 9 cut(s) 320, 335, 570, 869, 992, 1069, 1274, 1353, 1400
HpaII CCGG 3 cut(s) 548, 1146, 1850
HphI GGTGA 3 cut(s) 139, 882, 2102
Hpy166II GTNNAC 7 cut(s) 91, 1140, 1180, 1216, 1619, 1641, 1865
Hpy188I TCNGA 8 cut(s) 221, 432, 715, 934, 939, 1157, 1472, 1631
Hpy8I GTNNAC 7 cut(s) 91, 1140, 1180, 1216, 1619, 1641, 1865
Hpy99I CGWCG 2 cut(s) 178, 288
HpyAV CCTTC 5 cut(s) 9, 771, 1343, 1531, 1972
HpyCH4III ACNGT 3 cut(s) 886, 1424, 2142
HpyCH4IV ACGT 5 cut(s) 107, 820, 1386, 1575, 1655
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 511, 1322, 1553, 1665, 2036, 2039
HpyF3I CTNAG 3 cut(s) 27, 484, 1001
HpySE526I ACGT 5 cut(s) 107, 820, 1386, 1575, 1655
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 7 cut(s) 266, 856, 865, 905, 953, 1225, 1668
HspAI GCGC 3 cut(s) 193, 503, 1900
Kpn2I TCCGGA 1 cut(s) 547
LmnI GCTCC 9 cut(s) 34, 55, 141, 550, 965, 1068, 1157, 1559, 2000
Lsp1109I GCAGC 8 cut(s) 202, 356, 883, 1216, 1345, 1795, 2017, 2026
LweI GCATC 4 cut(s) 138, 778, 1681, 1813
MabI ACCWGGT 1 cut(s) 607
MaeI CTAG 2 cut(s) 170, 1397
MaeII ACGT 5 cut(s) 107, 820, 1386, 1575, 1655
MaeIII GTNAC 6 cut(s) 479, 700, 841, 1752, 2108, 2146
MbiI CCGCTC 2 cut(s) 37, 1738
MfeI CAATTG 3 cut(s) 765, 792, 2064
MflI RGATCY 5 cut(s) 349, 1455, 1831, 1942, 1954
MhlI GDGCHC 1 cut(s) 1661
MlsI TGGCCA 1 cut(s) 203
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 2 cut(s) 579, 986
MmeI TCCRAC 4 cut(s) 942, 1135, 1354, 1588
Mox20I TGGCCA 1 cut(s) 203
Mph1103I ATGCAT 1 cut(s) 1670
MroI TCCGGA 1 cut(s) 547
MscI TGGCCA 1 cut(s) 203
MseI TTAA 6 cut(s) 186, 1320, 1340, 1406, 1443, 2100
MslI CAYNNNNRTG 1 cut(s) 1872
Msp20I TGGCCA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 3 cut(s) 548, 1146, 1850
MspR9I CCNGG 7 cut(s) 354, 609, 1011, 1135, 1147, 1512, 1851
MunI CAATTG 3 cut(s) 765, 792, 2064
Mva1269I GAATGC 1 cut(s) 657
MvaI CCWGG 5 cut(s) 354, 609, 1011, 1135, 1512
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 7 cut(s) 37, 511, 1322, 1553, 1665, 2036, 2039
NciI CCSGG 2 cut(s) 1147, 1851
NcoI CCATGG 1 cut(s) 861
NlaIII CATG 7 cut(s) 266, 856, 865, 905, 953, 1225, 1668
NlaIV GGNNCC 7 cut(s) 57, 351, 759, 1064, 1111, 1192, 1833
NmeAIII GCCGAG 2 cut(s) 633, 1911
NmuCI GTSAC 4 cut(s) 479, 700, 841, 2108
NsiI ATGCAT 1 cut(s) 1670
PagI TCATGA 2 cut(s) 852, 901
PceI AGGCCT 2 cut(s) 979, 1009
PctI GAATGC 1 cut(s) 657
PfeI GAWTC 7 cut(s) 320, 335, 869, 1069, 1274, 1353, 1400
PflMI CCANNNNNTGG 3 cut(s) 584, 614, 1517
PfoI TCCNGGA 1 cut(s) 1510
PleI GAGTC 2 cut(s) 578, 986
PpsI GAGTC 2 cut(s) 578, 986
Ppu21I YACGTR 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 1414
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 1414
Psp6I CCWGG 5 cut(s) 352, 607, 1009, 1133, 1510
PspFI CCCAGC 1 cut(s) 684
PspGI CCWGG 5 cut(s) 352, 607, 1009, 1133, 1510
PspN4I GGNNCC 7 cut(s) 57, 351, 759, 1064, 1111, 1192, 1833
PspPI GGNCC 7 cut(s) 602, 631, 757, 1040, 1280, 1414, 1505
PspPPI RGGWCCY 1 cut(s) 1414
PsrI GAACNNNNNNTAC 4 cut(s) 573, 605, 1624, 1656
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 5 cut(s) 349, 1455, 1831, 1942, 1954
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 110, 380, 1265, 1290
RsaNI GTAC 4 cut(s) 109, 379, 1264, 1289
RseI CAYNNNNRTG 1 cut(s) 1872
SaqAI TTAA 6 cut(s) 186, 1320, 1340, 1406, 1443, 2100
Sau96I GGNCC 7 cut(s) 602, 631, 757, 1040, 1280, 1414, 1505
ScaI AGTACT 1 cut(s) 1290
SchI GAGTC 2 cut(s) 579, 986
ScrFI CCNGG 7 cut(s) 354, 609, 1011, 1135, 1147, 1512, 1851
SduI GDGCHC 1 cut(s) 1661
SexAI ACCWGGT 1 cut(s) 607
SfaNI GCATC 4 cut(s) 138, 778, 1681, 1813
SfcI CTRYAG 2 cut(s) 1428, 1938
SinI GGWCC 2 cut(s) 602, 1414
SmiMI CAYNNNNRTG 1 cut(s) 1872
SmlI CTYRAG 2 cut(s) 1025, 1284
SmoI CTYRAG 2 cut(s) 1025, 1284
SnaBI TACGTA 1 cut(s) 108
SseBI AGGCCT 2 cut(s) 979, 1009
SsiI CCGC 6 cut(s) 37, 212, 835, 1392, 1708, 1738
SspMI CTAG 2 cut(s) 170, 1397
StuI AGGCCT 2 cut(s) 979, 1009
StyD4I CCNGG 7 cut(s) 352, 607, 1009, 1133, 1145, 1510, 1849
StyI CCWWGG 2 cut(s) 861, 1173
TaaI ACNGT 3 cut(s) 886, 1424, 2142
TaiI ACGT 5 cut(s) 110, 823, 1389, 1578, 1658
TaqI TCGA 4 cut(s) 159, 338, 541, 1972
TaqII GACCGA 1 cut(s) 1958
TatI WGTACW 2 cut(s) 1263, 1288
TauI GCSGC 3 cut(s) 40, 1395, 1741
TfiI GAWTC 7 cut(s) 320, 335, 869, 1069, 1274, 1353, 1400
Tru1I TTAA 6 cut(s) 186, 1320, 1340, 1406, 1443, 2100
Tru9I TTAA 6 cut(s) 186, 1320, 1340, 1406, 1443, 2100
TscAI CASTG 4 cut(s) 310, 484, 1206, 1954
TseFI GTSAC 4 cut(s) 479, 700, 841, 2108
TseI GCWGC 8 cut(s) 190, 369, 896, 1229, 1358, 1783, 2030, 2039
Tsp45I GTSAC 4 cut(s) 479, 700, 841, 2108
TspGWI ACGGA 4 cut(s) 35, 172, 615, 2113
TspRI CASTG 4 cut(s) 310, 484, 1206, 1954
Van91I CCANNNNNTGG 3 cut(s) 584, 614, 1517
VpaK11BI GGWCC 2 cut(s) 602, 1414
XapI RAATTY 5 cut(s) 268, 448, 913, 1465, 1990
XmiI GTMKAC 1 cut(s) 1139
XspI CTAG 2 cut(s) 170, 1397
ZrmI AGTACT 1 cut(s) 1290
Zsp2I ATGCAT 1 cut(s) 1670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.