Rorug04G0034200

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007119
Physical Location & Seq
Forward (+)
5081453 .. 5085025
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0034200.1

Sequence Viewer

Length: 237 bp
ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACACAGGAGCAGATCCAGAAGATCAGGATCACTCTCTCTTCCAAGAACGTCAAGAACATCGAGAAAGTTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAAGAGCCTGAGCAAGGGACCAGTGAGGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTATGTTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

78

Amino Acids

8.67

Weight (kDa)

10.02

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 24 - 74 7.2e-11 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 132
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 52, 80
AdeI CACNNNGTG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 157
AjnI CCWGG 2 cut(s) 31, 200
Alw26I GTCTC 2 cut(s) 38, 41
AlwI GGATC 2 cut(s) 52, 80
Ama87I CYCGRG 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 33, 202
BcoDI GTCTC 2 cut(s) 38, 41
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 33, 202
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 136, 162
BmrFI CCNGG 2 cut(s) 33, 202
BmsI GCATC 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 138, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 2 cut(s) 33, 202
BseDI CCNNGG 2 cut(s) 138, 180
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 2 cut(s) 38, 41
BsmFI GGGAC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 3 cut(s) 57, 66, 72
BspACI CCGC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 136, 162
BspPI GGATC 2 cut(s) 52, 80
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 138, 180
BssMI GATC 3 cut(s) 57, 66, 72
BssT1I CCWWGG 2 cut(s) 138, 180
Bst2UI CCWGG 2 cut(s) 33, 202
Bst6I CTCTTC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 3 cut(s) 60, 69, 75
BstMAI GTCTC 2 cut(s) 38, 41
BstMBI GATC 3 cut(s) 57, 66, 72
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 33, 202
BstSCI CCNGG 2 cut(s) 31, 200
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 161
CviJI RGCY 3 cut(s) 5, 31, 150
CviKI_1 RGCY 3 cut(s) 5, 31, 150
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 59, 68, 74
DpnII GATC 3 cut(s) 57, 66, 72
DraIII CACNNNGTG 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 138, 180
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 38
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 31, 200
EcoT14I CCWWGG 2 cut(s) 138, 180
ErhI CCWWGG 2 cut(s) 138, 180
FaiI YATR 1 cut(s) 227
FaqI GGGAC 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
HphI GGTGA 1 cut(s) 201
Hpy188III TCNNGA 5 cut(s) 38, 61, 70, 97, 106
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 93
Kzo9I GATC 3 cut(s) 57, 66, 72
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 162
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 207
MalI GATC 3 cut(s) 59, 68, 74
MboI GATC 3 cut(s) 57, 66, 72
MboII GAAGA 2 cut(s) 75, 76
MflI RGATCY 1 cut(s) 57
MnlI CCTC 2 cut(s) 34, 162
MspR9I CCNGG 2 cut(s) 33, 202
MvaI CCWGG 2 cut(s) 33, 202
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 57, 66, 72
NlaIV GGNNCC 2 cut(s) 136, 162
NmuCI GTSAC 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 38
PkrI GCNGC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 31, 200
PspGI CCWGG 2 cut(s) 31, 200
PspN4I GGNNCC 2 cut(s) 136, 162
PspPI GGNCC 1 cut(s) 161
PsuI RGATCY 1 cut(s) 57
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 57, 66, 72
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 33, 202
SetI ASST 3 cut(s) 96, 186, 226
SfaNI GCATC 1 cut(s) 162
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 31, 200
StyI CCWWGG 2 cut(s) 138, 180
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 39, 105
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 161
XagI CCTNNNNNAGG 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.