Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007119

Physical Location & Seq

Genomic Coordinates Reverse (-)

27058174 .. 27063186

Gene Structure 5013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1252800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGCTTCACCCAATTCGATGGCAGTGCGGCCTTCTCTGGCGGTGGGTTCATGCCCCCTCAGGCCGCCCACTCAGGCACCGACACCACTTTCTCTTCCACCAAGAATCGTGACATCCAGACACTGCTTCCACTGACAGTGAAGCAGATAACTGATGCTTGTGTCTCAGCAGTTGATAAATCAGAATTTGTTATTGACAGTGTCGACGTGAATAATGTTACACTTGTTGGGATGGTGCGTGAAAAAATTGGAAGAATTACAGATGTTGCTTTCTTTCTTGATGACGGAACTGGACGGATGGAGTGTAACAAGTGGTTTCATGAAGCAAAAGACGCAAATGAAATGGAAAGAATCTTGGATGGAATGTATGTCCGGATTCACGGACGCTTGAAGAGCTTTCAGGGTAAGAAGACCCTAAATGTCTTCTCTATTAGGCCTGTGAGTGACTATAATGAGATTGCCAGCCACTTCATTGAGTGCATCTATGTCCATTTATACAACAGCAGATTACGGAAACCACCTGCTGATTTTGGTGTCACAGCGCAACCACATATGACATTTCCAACAAATCAGTTATCTGGCCAATATAGCTTCGATGGACAGAGTAGCATTGAAGTAAAGGTCTTAGAAATTTTGAGCCACCCTTCATACCTTGGAAGGGAAGAGGGGGCGCACCTTGAGGATATAGCCCGACAACTGAAAATTCCAGCGAATGATCTCATGTTAGCTATTGACAATCTTGTACAGGAAGGCAAAGTTTACTCAACAGTTGATGACTTTCACTACAAATCAACTGCGAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

269

Amino Acids

29.87

Weight (kDa)

5.57

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	73 - 147	2.2e-08	OB-fold nucleic acid binding domain
RPA_C	PF08784	164 - 259	3.1e-12	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02920 AT3G02920 AT3G02920
fragaria_vesca	FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140
malus_domestica	MD13G1252800.v1.1
prunus_persica	Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1
pyrus_communis	pycom13g22520
rosa_chinensis	RchiOBHm_Chr4g0402271
rosa_laevigata	RLG00000009105
rosa_multiflora	Rmu_sc0002324.1_g000023 Rmu_sc0008199.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346990
rosa_rugosa	Rorug04G0034200
rosa_samantha	Rh4AG111500 Rh4BG104200 Rh4CG118500 Rh4DG102900 Rh4DG103400
rosa_wichuraiana	Rw4G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	3 cut(s)	29, 42, 66
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	3 cut(s)	185, 630, 702
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	1 cut(s)	658
AgsI	TTSAA	2 cut(s)	391, 614
AjiI	CACGTC	1 cut(s)	208
AluBI	AGCT	4 cut(s)	6, 396, 591, 728
AluI	AGCT	4 cut(s)	6, 396, 591, 728
Alw26I	GTCTC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	4 cut(s)	30, 63, 434, 580
ApoI	RAATTY	3 cut(s)	185, 630, 702
AspLEI	GCGC	2 cut(s)	544, 673
AxyI	CCTNAGG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	415, 416
BccI	CCATC	5 cut(s)	14, 226, 292, 353, 590
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BcoDI	GTCTC	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	2 cut(s)	30, 66
BlsI	GCNGC	2 cut(s)	31, 67
BmgBI	CACGTC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	79
BmsI	GCATC	2 cut(s)	145, 489
BpiI	GAAGAC	2 cut(s)	415, 416
BpuEI	CTTGAG	1 cut(s)	698
BsaJI	CCNNGG	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	4 cut(s)	114, 237, 303, 364
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMII	CTCAG	3 cut(s)	74, 87, 180
BseNI	ACTGG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	32, 65, 436, 582
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmAI	GTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	4 cut(s)	32, 65, 436, 582
Bsp13I	TCCGGA	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	742
Bsp143I	GATC	1 cut(s)	715
BspACI	CCGC	3 cut(s)	29, 42, 66
BspANI	GGCC	4 cut(s)	32, 65, 436, 582
BspCNI	CTCAG	3 cut(s)	73, 86, 179
BspEI	TCCGGA	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	529
BspQI	GCTCTTC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	1 cut(s)	715
BssT1I	CCWWGG	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	139, 200, 769
Bst6I	CTCTTC	3 cut(s)	100, 386, 657
BstAUI	TGTACA	1 cut(s)	742
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	4 cut(s)	60, 73, 166, 625
BstF5I	GGATG	4 cut(s)	114, 237, 303, 364
BstHHI	GCGC	2 cut(s)	544, 673
BstKTI	GATC	1 cut(s)	718
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	715
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 393, 588
BstV2I	GAAGAC	2 cut(s)	415, 416
BstXI	CCANNNNNNTGG	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	32, 65, 436, 582
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	4 cut(s)	114, 237, 303, 364
BtsI	GCAGTG	2 cut(s)	31, 122
BtsIMutI	CAGTG	5 cut(s)	31, 122, 131, 144, 205
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	2 cut(s)	544, 673
CseI	GACGC	2 cut(s)	341, 393
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	3 cut(s)	52, 320, 721
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	4 cut(s)	60, 73, 166, 625
DpnI	GATC	1 cut(s)	717
DpnII	GATC	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	3 cut(s)	100, 386, 657
EarI	CTCTTC	3 cut(s)	100, 386, 657
Eco130I	CCWWGG	1 cut(s)	652
Eco147I	AGGCCT	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	3 cut(s)	55, 323, 724
FatI	CATG	3 cut(s)	51, 319, 720
FauNDI	CATATG	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	30, 66
FokI	GGATG	4 cut(s)	101, 244, 310, 371
Fsp4HI	GCNGC	2 cut(s)	30, 66
GlaI	GCGC	2 cut(s)	543, 672
GluI	GCNGC	2 cut(s)	30, 66
HaeIII	GGCC	4 cut(s)	32, 65, 436, 582
HapII	CCGG	1 cut(s)	373
HgaI	GACGC	2 cut(s)	341, 393
HhaI	GCGC	2 cut(s)	544, 673
Hin1II	CATG	3 cut(s)	55, 323, 724
Hin6I	GCGC	2 cut(s)	542, 671
HinP1I	GCGC	2 cut(s)	542, 671
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	106, 351, 376
HpaII	CCGG	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	205, 760
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	5 cut(s)	110, 118, 278, 320, 373
Hpy8I	GTNNAC	2 cut(s)	205, 760
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	43, 651, 654, 743
HpyCH4III	ACNGT	3 cut(s)	139, 200, 769
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 393, 588
HpyF3I	CTNAG	4 cut(s)	60, 73, 166, 625
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	55, 323, 724
HspAI	GCGC	2 cut(s)	542, 671
Kpn2I	TCCGGA	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	715
LguI	GCTCTTC	1 cut(s)	386
LweI	GCATC	2 cut(s)	145, 489
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	5 cut(s)	110, 217, 305, 443, 535
MalI	GATC	1 cut(s)	717
MboI	GATC	1 cut(s)	715
MboII	GAAGA	6 cut(s)	87, 264, 403, 415, 421, 674
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	6 cut(s)	14, 185, 246, 255, 630, 702
MluNI	TGGCCA	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	3 cut(s)	69, 658, 673
Mox20I	TGGCCA	1 cut(s)	582
MroI	TCCGGA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	582
MspI	CCGG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	805
MwoI	GCNNNNNNNGC	3 cut(s)	332, 393, 588
NdeI	CATATG	1 cut(s)	552
NdeII	GATC	1 cut(s)	715
NlaIII	CATG	3 cut(s)	55, 323, 724
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	3 cut(s)	110, 443, 535
PagI	TCATGA	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	386
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	3 cut(s)	106, 351, 376
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	31, 67
PspN4I	GGNNCC	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
SalI	GTCGAC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	386
SatI	GCNGC	2 cut(s)	30, 66
Sau3AI	GATC	1 cut(s)	715
SetI	ASST	9 cut(s)	8, 210, 398, 523, 593, 624, 654, 678, 730
SfaNI	GCATC	2 cut(s)	145, 489
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	6 cut(s)	14, 185, 246, 255, 630, 702
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	3 cut(s)	29, 42, 66
StuI	AGGCCT	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	139, 200, 769
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	18, 204, 594
TasI	AATT	6 cut(s)	14, 185, 246, 255, 630, 702
TatI	WGTACW	1 cut(s)	742
TauI	GCSGC	2 cut(s)	32, 68
TfiI	GAWTC	3 cut(s)	106, 351, 376
TscAI	CASTG	5 cut(s)	31, 129, 138, 144, 205
TseFI	GTSAC	3 cut(s)	110, 443, 535
Tsp45I	GTSAC	3 cut(s)	110, 443, 535
TspDTI	ATGAA	6 cut(s)	40, 308, 336, 354, 460, 636
TspGWI	ACGGA	4 cut(s)	300, 310, 396, 526
TspRI	CASTG	5 cut(s)	31, 129, 138, 144, 205
Tth111I	GACNNNGTC	1 cut(s)	200
XapI	RAATTY	3 cut(s)	185, 630, 702
XmiI	GTMKAC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.