Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007119

Physical Location & Seq

Genomic Coordinates Reverse (-)

18105247 .. 18110979

Gene Structure 5733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAACAATCGTGACGTCCAGACACTGCTTCCAGTGACCCTTAAGCAGATCAGCGACGCGATTGCCGGCGAAAATGGTAAAAGCGATTTCTCTATTGACGGCGTCGATGTCTCCACTGTTAAGCTTGTGGGAGTAGTGCAGGAGTTTGTTGGAAGATGTACAGATGCTACTTTCACTCTTGATGACGGGACCGGGCGGGTTGAATGCAACCGATGGTGTCAGGAGCAAATAGACACTGCCGAAATCGAAGGAATCTCGAACGGGATGTACGTTCGGGTTCATGGGCGCTTGAAAACCTTTCAGGGGAAGAAGACCATACAAGTGTTCTCTGTTAGGCCTGTGGATGACTATAATGAGATTGCAAGCCACTTTATCGAGTGTATGTACGTACATTTCTTCAACAGCAAGTTACTGAAACCACAGGTTGGTGTAGGTGTCACAACTCAGCCATATATGACAATTCCACCAAATCAGGTATCTGGACAACATAGCCTCTATGGACAGAGGAGCATTGAAGAAAGGGTCTTACAAGTTTTGAACCAGCCTTTATACCTTTCAAGGGATGCGGGAGCAAATGCTGAGGATATTGCCCAACAACTGAAAGTACCAGTGAAAGATGTCATACATGCTGCTAATAATCTTGCTCATGTAGGCAGTATTTACGAGATCGATACGTTGCACTATAAATCTCTTGCCAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

234

Amino Acids

25.93

Weight (kDa)

5.62

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	40 - 113	3.8e-09	OB-fold nucleic acid binding domain
RPA_C	PF08784	161 - 222	1.5e-07	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02920 AT3G02920 AT3G02920
fragaria_vesca	FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140
malus_domestica	MD13G1252800.v1.1
prunus_persica	Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1
pyrus_communis	pycom13g22520
rosa_chinensis	RchiOBHm_Chr4g0402271
rosa_laevigata	RLG00000009105
rosa_multiflora	Rmu_sc0002324.1_g000023 Rmu_sc0008199.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346990
rosa_rugosa	Rorug04G0034200
rosa_samantha	Rh4AG111500 Rh4BG104200 Rh4CG118500 Rh4DG102900 Rh4DG103400
rosa_wichuraiana	Rw4G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccII	CGCG	1 cut(s)	59
AciI	CCGC	2 cut(s)	196, 566
AcyI	GRCGYC	2 cut(s)	15, 102
AfaI	GTAC	5 cut(s)	160, 269, 386, 390, 606
AfiI	CCNNNNNNNGG	3 cut(s)	303, 425, 559
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	6 cut(s)	203, 292, 400, 515, 538, 558
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	115
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	115
BfoI	RGCGCY	1 cut(s)	289
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	630
BlsI	GCNGC	1 cut(s)	631
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	2 cut(s)	154, 553
BpiI	GAAGAC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	193
Bsa29I	ATCGAT	1 cut(s)	669
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	2 cut(s)	15, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 425, 559
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	32, 608
BseCI	ATCGAT	1 cut(s)	669
BseGI	GGATG	3 cut(s)	270, 349, 568
BseLI	CCNNNNNNNGG	3 cut(s)	303, 425, 559
BseMII	CTCAG	2 cut(s)	458, 570
BseNI	ACTGG	2 cut(s)	32, 608
BseRI	GAGGAG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	669
BsiSI	CCGG	2 cut(s)	66, 192
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	303, 425, 559
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	48, 666
BspACI	CCGC	2 cut(s)	196, 566
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	457, 571
BspDI	ATCGAT	1 cut(s)	669
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	32, 608
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	2 cut(s)	48, 666
BssNI	GRCGYC	2 cut(s)	15, 102
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	2 cut(s)	15, 102
BstAFI	CTTAAG	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	67, 364
BstDEI	CTNAG	2 cut(s)	444, 579
BstF5I	GGATG	3 cut(s)	270, 349, 568
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	51, 669
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	48, 666
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	191
BstSNI	TACGTA	1 cut(s)	388
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	317
Bsu15I	ATCGAT	1 cut(s)	669
BsuRI	GGCC	1 cut(s)	337
BsuTUI	ATCGAT	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	270, 349, 568
BtsI	GCAGTG	2 cut(s)	23, 234
BtsIMutI	CAGTG	5 cut(s)	23, 39, 114, 234, 615
Cac8I	GCNNGC	2 cut(s)	67, 364
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	2 cut(s)	65, 91
Csp6I	GTAC	5 cut(s)	159, 268, 385, 389, 605
CviAII	CATG	3 cut(s)	281, 626, 647
CviJI	RGCY	6 cut(s)	124, 337, 366, 448, 492, 544
CviKI_1	RGCY	6 cut(s)	124, 337, 366, 448, 492, 544
CviQI	GTAC	5 cut(s)	159, 268, 385, 389, 605
DdeI	CTNAG	2 cut(s)	444, 579
DpnI	GATC	2 cut(s)	50, 668
DpnII	GATC	2 cut(s)	48, 666
Eco105I	TACGTA	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	189
FaeI	CATG	3 cut(s)	284, 629, 650
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	3 cut(s)	280, 625, 646
FauI	CCCGC	2 cut(s)	189, 559
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	3 cut(s)	277, 356, 575
Fsp4HI	GCNGC	1 cut(s)	630
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	2 cut(s)	66, 192
HgaI	GACGC	2 cut(s)	65, 91
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	2 cut(s)	15, 102
Hin1II	CATG	3 cut(s)	284, 629, 650
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	66, 192
Hpy188III	TCNNGA	6 cut(s)	11, 19, 179, 221, 256, 480
Hpy99I	CGWCG	2 cut(s)	59, 107
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	4 cut(s)	15, 270, 387, 674
HpyCH4V	TGCA	4 cut(s)	139, 207, 362, 679
HpyF3I	CTNAG	2 cut(s)	444, 579
HpySE526I	ACGT	4 cut(s)	15, 270, 387, 674
Hsp92I	GRCGYC	2 cut(s)	15, 102
Hsp92II	CATG	3 cut(s)	284, 629, 650
HspAI	GCGC	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	48, 666
LmnI	GCTCC	3 cut(s)	223, 507, 569
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	2 cut(s)	154, 553
MaeII	ACGT	4 cut(s)	15, 270, 387, 674
MaeIII	GTNAC	4 cut(s)	11, 34, 408, 436
MalI	GATC	2 cut(s)	50, 668
MboI	GATC	2 cut(s)	48, 666
MboII	GAAGA	5 cut(s)	165, 319, 322, 388, 527
MluCI	AATT	1 cut(s)	459
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	498, 503, 574
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	2 cut(s)	42, 120
MslI	CAYNNNNRTG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	2 cut(s)	66, 192
MspR9I	CCNGG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	209
MvnI	CGCG	1 cut(s)	59
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	48, 666
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	284, 629, 650
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	3 cut(s)	11, 34, 436
NspI	RCATGY	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	631
Ppu21I	YACGTR	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	189
PsrI	GAACNNNNNNTAC	2 cut(s)	251, 283
PstNI	CAGNNNCTG	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	5 cut(s)	160, 269, 386, 390, 606
RsaNI	GTAC	5 cut(s)	159, 268, 385, 389, 605
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	42, 120
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	2 cut(s)	48, 666
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	193
SfaNI	GCATC	2 cut(s)	154, 553
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SnaBI	TACGTA	1 cut(s)	388
Sse9I	AATT	1 cut(s)	459
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	196, 566
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	4 cut(s)	18, 273, 390, 677
TaqI	TCGA	5 cut(s)	105, 246, 257, 375, 669
TasI	AATT	1 cut(s)	459
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	42, 120
Tru9I	TTAA	2 cut(s)	42, 120
TscAI	CASTG	5 cut(s)	30, 39, 121, 241, 615
TseFI	GTSAC	3 cut(s)	11, 34, 436
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	3 cut(s)	11, 34, 436
TspDTI	ATGAA	2 cut(s)	17, 269
TspRI	CASTG	5 cut(s)	30, 39, 121, 241, 615
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	189
XceI	RCATGY	1 cut(s)	629
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.