Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007119

Physical Location & Seq

Genomic Coordinates Reverse (-)

651572 .. 654487

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTACGGAGGCGATTTTGACGGCAACGCTGCTTTCGCCGGCGGCGGCTTCATGCCTTCTCAGGCGACTACGCAAGCCCATGAATCCTCATCTTCCCTCAAGAACCGCGATGTACGTACCTTGCTTCCCCTGACACTGAAGCAGTTGAGCAGCGCATCAACCACTGGCGAATCAAATTTCTCTATTGATGGCGTTGATATTAAAACTGTTGTAATCGTTGGACGGATTTCTAGAATGGAGAACAGAATCACTCAGGTCGATTTTGTTGTTGATGACGGTACAGGCTGGGTTGATTGTGTCAGATGGTGTCACGCTCGGCAAGAAACTGAAGAAATGGAAGCAGTCAAGCTGGGAATGTATGTTCGCTTACATGGACACCTGAAAATTTTTCAAGGGAAACGATCTGTGAATGTTTTTTCAGTCAGGCCTGTCACTGACTTCAATGAGATTGTACACCACTTTACCGAGTGTATGTATGTCCACATGTACAACACCAAGTTACGGGGTGGTTCTATTACTCAAGATACTGCTACTCCTAGGCCCCAAATGCCATATTCAACAATGCCAACCCCTGCAAAGCCCTACCAAACCGGTCCATCTAATCAGTTCCCGAACCAATTCAATGATTCAATGCATGGTGTAAAGCAGACGGTCTTGAATTACCTGAATCAACCTATGCACATTGTATCTGAAGCTGGAGTTCACTGTGATATAATTGCCCGTGAACTCAGGATTCCGCTGCTTCAAGTCAAGGAAGCGTTAGAACAGCTCTCAAACGATGGTTGCATATACTCGACTTTGGACGAGACATGCTTCAAATCGACTGCTAACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

278

Amino Acids

30.96

Weight (kDa)

6.19

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	70 - 143	3.4e-09	OB-fold nucleic acid binding domain
RPA_C	PF08784	161 - 269	6.2e-30	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02920 AT3G02920 AT3G02920
fragaria_vesca	FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140
malus_domestica	MD13G1252800.v1.1
prunus_persica	Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1
pyrus_communis	pycom13g22520
rosa_chinensis	RchiOBHm_Chr4g0402271
rosa_laevigata	RLG00000009105
rosa_multiflora	Rmu_sc0002324.1_g000023 Rmu_sc0008199.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346990
rosa_rugosa	Rorug04G0034200
rosa_samantha	Rh4AG111500 Rh4BG104200 Rh4CG118500 Rh4DG102900 Rh4DG103400
rosa_wichuraiana	Rw4G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	4 cut(s)	42, 45, 106, 737
AcsI	RAATTY	2 cut(s)	175, 384
AcuI	CTGAAG	3 cut(s)	158, 348, 711
AfaI	GTAC	6 cut(s)	5, 114, 118, 280, 453, 488
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	483
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	8 cut(s)	392, 442, 558, 622, 630, 658, 746, 817
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	3 cut(s)	349, 695, 769
AluI	AGCT	3 cut(s)	349, 695, 769
Alw26I	GTCTC	1 cut(s)	800
AoxI	GGCC	2 cut(s)	425, 539
ApeKI	GCWGC	3 cut(s)	29, 150, 739
ApoI	RAATTY	2 cut(s)	175, 384
AsiGI	ACCGGT	1 cut(s)	590
Asp700I	GAANNNNTTC	1 cut(s)	617
AspA2I	CCTAGG	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	540, 593
AvaII	GGWCC	1 cut(s)	593
AvrII	CCTAGG	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	16, 162, 726
BccI	CCATC	4 cut(s)	182, 297, 604, 773
BceAI	ACGGC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	800
BfaI	CTAG	2 cut(s)	231, 537
BisI	GCNGC	5 cut(s)	30, 43, 46, 151, 740
BlnI	CCTAGG	1 cut(s)	536
BlsI	GCNGC	5 cut(s)	31, 44, 47, 152, 741
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	2 cut(s)	540, 593
BmiI	GGNNCC	1 cut(s)	542
BmsI	GCATC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	83, 504
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	536
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse118I	RCCGGY	2 cut(s)	38, 590
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	74, 266, 742
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	16, 162, 726
BseYI	CCCAGC	2 cut(s)	285, 349
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	427, 541
BshTI	ACCGGT	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	39, 591
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	800
BsnI	GGCC	2 cut(s)	427, 541
Bsp1407I	TGTACA	2 cut(s)	451, 486
Bsp143I	GATC	1 cut(s)	401
BspACI	CCGC	4 cut(s)	42, 45, 106, 737
BspANI	GGCC	2 cut(s)	427, 541
BspCNI	CTCAG	3 cut(s)	73, 265, 741
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	542
BsrFI	RCCGGY	2 cut(s)	38, 590
BsrGI	TGTACA	2 cut(s)	451, 486
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	2 cut(s)	38, 590
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	536
Bst4CI	ACNGT	4 cut(s)	208, 278, 652, 707
BstAUI	TGTACA	2 cut(s)	451, 486
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	40, 75
BstDEI	CTNAG	3 cut(s)	60, 252, 728
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 547
BstNSI	RCATGY	2 cut(s)	487, 813
BstSNI	TACGTA	1 cut(s)	116
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	16, 162, 726
BsuRI	GGCC	2 cut(s)	427, 541
BtgZI	GCGATG	1 cut(s)	123
BtsIMutI	CAGTG	4 cut(s)	134, 162, 432, 703
Cac8I	GCNNGC	2 cut(s)	40, 75
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	38, 590
Cfr13I	GGNCC	2 cut(s)	540, 593
Csp6I	GTAC	6 cut(s)	4, 113, 117, 279, 452, 487
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	6 cut(s)	52, 80, 371, 484, 635, 810
CviJI	RGCY	9 cut(s)	48, 77, 285, 349, 427, 541, 580, 695, 769
CviKI_1	RGCY	9 cut(s)	48, 77, 285, 349, 427, 541, 580, 695, 769
CviQI	GTAC	6 cut(s)	4, 113, 117, 279, 452, 487
DdeI	CTNAG	3 cut(s)	60, 252, 728
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
Eco105I	TACGTA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	536
Eco147I	AGGCCT	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	3 cut(s)	158, 348, 711
EcoO109I	RGGNCCY	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	536
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	6 cut(s)	55, 83, 374, 487, 638, 813
FatI	CATG	6 cut(s)	51, 79, 370, 483, 634, 809
Fnu4HI	GCNGC	5 cut(s)	30, 43, 46, 151, 740
Fsp4HI	GCNGC	5 cut(s)	30, 43, 46, 151, 740
FspBI	CTAG	2 cut(s)	231, 537
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	5 cut(s)	30, 43, 46, 151, 740
GsaI	CCCAGC	2 cut(s)	289, 353
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	427, 541
HapII	CCGG	2 cut(s)	39, 591
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	6 cut(s)	55, 83, 374, 487, 638, 813
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	6 cut(s)	83, 170, 246, 626, 667, 733
HpaII	CCGG	2 cut(s)	39, 591
Hpy166II	GTNNAC	4 cut(s)	454, 481, 703, 725
Hpy188I	TCNGA	2 cut(s)	302, 691
Hpy188III	TCNNGA	6 cut(s)	100, 231, 521, 610, 655, 730
Hpy8I	GTNNAC	4 cut(s)	454, 481, 703, 725
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	4 cut(s)	208, 278, 652, 707
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	575, 634, 679, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 547
HpyF3I	CTNAG	3 cut(s)	60, 252, 728
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	6 cut(s)	55, 83, 374, 487, 638, 813
HspAI	GCGC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	401
Lsp1109I	GCAGC	3 cut(s)	16, 162, 726
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	2 cut(s)	231, 537
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	3 cut(s)	308, 430, 498
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	2 cut(s)	84, 341
MluCI	AATT	5 cut(s)	175, 384, 617, 658, 714
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	2 cut(s)	97, 107
Mph1103I	ATGCAT	1 cut(s)	636
MreI	CGCCGGCG	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	2 cut(s)	39, 591
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	35, 547
NaeI	GCCGGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	401
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	6 cut(s)	55, 83, 374, 487, 638, 813
NlaIV	GGNNCC	1 cut(s)	542
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	308, 430
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	2 cut(s)	487, 813
PceI	AGGCCT	1 cut(s)	427
PciI	ACATGT	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	6 cut(s)	83, 170, 246, 626, 667, 733
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	5 cut(s)	31, 44, 47, 152, 741
Ppu21I	YACGTR	1 cut(s)	116
PscI	ACATGT	1 cut(s)	483
PspFI	CCCAGC	2 cut(s)	285, 349
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	2 cut(s)	540, 593
RsaI	GTAC	6 cut(s)	5, 114, 118, 280, 453, 488
RsaNI	GTAC	6 cut(s)	4, 113, 117, 279, 452, 487
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	5 cut(s)	30, 43, 46, 151, 740
Sau3AI	GATC	1 cut(s)	401
Sau96I	GGNCC	2 cut(s)	540, 593
SetI	ASST	9 cut(s)	118, 122, 258, 351, 381, 666, 676, 697, 771
SfaNI	GCATC	1 cut(s)	164
SgrAI	CRCCGGYG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	98, 519
SmoI	CTYRAG	2 cut(s)	98, 519
SnaBI	TACGTA	1 cut(s)	116
Sse9I	AATT	5 cut(s)	175, 384, 617, 658, 714
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	4 cut(s)	42, 45, 106, 737
SspMI	CTAG	2 cut(s)	231, 537
StuI	AGGCCT	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	4 cut(s)	208, 278, 652, 707
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	258, 794, 821
TasI	AATT	5 cut(s)	175, 384, 617, 658, 714
TatI	WGTACW	2 cut(s)	451, 486
TauI	GCSGC	2 cut(s)	45, 48
TfiI	GAWTC	6 cut(s)	83, 170, 246, 626, 667, 733
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	4 cut(s)	141, 169, 439, 710
TseFI	GTSAC	2 cut(s)	308, 430
TseI	GCWGC	3 cut(s)	29, 150, 739
Tsp45I	GTSAC	2 cut(s)	308, 430
TspDTI	ATGAA	2 cut(s)	40, 96
TspGWI	ACGGA	2 cut(s)	21, 238
TspRI	CASTG	4 cut(s)	141, 169, 439, 710
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	2 cut(s)	175, 384
XbaI	TCTAGA	1 cut(s)	230
XceI	RCATGY	2 cut(s)	487, 813
XmaJI	CCTAGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	2 cut(s)	231, 537
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.