Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007119

Physical Location & Seq

Genomic Coordinates Reverse (-)

7888103 .. 7893329

Gene Structure 5227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08140.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACGTGAGCCAATTCGACGGAAGCGCCGCCTTCCACGGCGGTGGCTTCATGCCCCCCGCCGCCAACCCAACCCCCGATTACTCTTTTTTTAAGAATCGTGACGCCCAAACACATACACTGCTTCCGGTAACCCTGAAGCAGTTCAGCGACGCGATTGCCGGCGAAAATGGTAAAATGGAGTTCTCCATCGACGGCGTCGTTGTCTCCACCGTTAAGCTTGTGGGAATCGTGCACGAGTTTGTCGAAAAATTAACAGATGCTACTTTCATTCTTGATGATGGGACCGGACGGGTCGAATGCAACAGATGGTCTAATGAGCAAGTAGACACTGCCGAAATTGAAGCAATCTCGAACGGAATGTATGTTCGGGTTCATGGGCGCTTGAGAACCTTTCAGGGGCAGAAGACCATAAATGTCTTCTCTGTTAGGCCAGTGGATGACTATAATGAGATTGCAAGTCACTTTATCGAGTGTATATACGTCCATTTATGCAACAGCAAGTTACCGAAACCACAGGTTGGTGTGGGTCTCGCAACTCAGTCATATATGACAAATCCACAAAATCAGGTTGGTGTTGGTGTCACAACACAGTCATATATGACAATTCCACCAAATCAGGTATTTGGACAATATAGGCATGATGGACAGAGGATCATTGCAGAAAGGGTCTTTCAAGTTTTAAACCATCCTCGATATCTGGTGAAGAAAAGAGCCCCCGGATCAGATTGTATACTTCTTTATTCTCTATTATTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

254

Amino Acids

28.23

Weight (kDa)

6.23

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	72 - 145	3.5e-09	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02920 AT3G02920 AT3G02920
fragaria_vesca	FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140
malus_domestica	MD13G1252800.v1.1
prunus_persica	Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1
pyrus_communis	pycom13g22520
rosa_chinensis	RchiOBHm_Chr4g0402271
rosa_laevigata	RLG00000009105
rosa_multiflora	Rmu_sc0002324.1_g000023 Rmu_sc0008199.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346990
rosa_rugosa	Rorug04G0034200
rosa_samantha	Rh4AG111500 Rh4BG104200 Rh4CG118500 Rh4DG102900 Rh4DG103400
rosa_wichuraiana	Rw4G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	327, 733
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	30, 42, 60, 63
AclWI	GGATC	2 cut(s)	662, 730
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	2 cut(s)	105, 198
AfiI	CCNNNNNNNGG	2 cut(s)	399, 521
AgsI	TTSAA	2 cut(s)	344, 677
AjiI	CACGTC	1 cut(s)	7
AleI	CACNNNNGTG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	211, 536
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	662, 730
AoxI	GGCC	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	29, 384
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	720
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	718
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	412, 413
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	5 cut(s)	197, 275, 303, 638, 696
BceAI	ACGGC	2 cut(s)	55, 211
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcnI	CCSGG	1 cut(s)	720
BcoDI	GTCTC	2 cut(s)	211, 536
BfoI	RGCGCY	2 cut(s)	30, 385
BisI	GCNGC	2 cut(s)	30, 63
BlsI	GCNGC	2 cut(s)	31, 64
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	720
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	412, 413
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	720
BsaHI	GRCGYC	2 cut(s)	105, 198
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	37, 718
BsaWI	WCCGGW	2 cut(s)	127, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 521
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	657
BseDI	CCNNGG	2 cut(s)	37, 718
BseGI	GGATG	2 cut(s)	445, 688
BseLI	CCNNNNNNNGG	2 cut(s)	399, 521
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	4 cut(s)	128, 162, 288, 720
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	399, 521
BsmAI	GTCTC	2 cut(s)	211, 536
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	433
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	237, 718
Bsp143I	GATC	2 cut(s)	654, 722
BspACI	CCGC	4 cut(s)	30, 42, 60, 63
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	662, 730
BspTNI	GGTCTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	37, 718
BssMI	GATC	2 cut(s)	654, 722
BssNAI	GTATAC	1 cut(s)	734
BssNI	GRCGYC	2 cut(s)	105, 198
BssSI	CACGAG	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	734
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	214, 594
BstACI	GRCGYC	2 cut(s)	105, 198
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	445, 688
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	2 cut(s)	30, 385
BstHHI	GCGC	2 cut(s)	29, 384
BstKTI	GATC	2 cut(s)	657, 725
BstMAI	GTCTC	2 cut(s)	211, 536
BstMBI	GATC	2 cut(s)	654, 722
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	718
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	2 cut(s)	412, 413
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstZ17I	GTATAC	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	433
BtgI	CCRYGG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	445, 688
BtsI	GCAGTG	2 cut(s)	119, 330
BtsIMutI	CAGTG	3 cut(s)	119, 330, 441
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	2 cut(s)	29, 384
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	285
CseI	GACGC	3 cut(s)	113, 161, 187
CviAII	CATG	3 cut(s)	52, 377, 641
CviJI	RGCY	5 cut(s)	12, 48, 220, 433, 716
CviKI_1	RGCY	5 cut(s)	12, 48, 220, 433, 716
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	2 cut(s)	656, 724
DpnII	GATC	2 cut(s)	654, 722
DraI	TTTAAA	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	718
Eco31I	GGTCTC	1 cut(s)	536
Eco32I	GATATC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	718
FaeI	CATG	3 cut(s)	55, 380, 644
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	51, 376, 640
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	2 cut(s)	327, 733
Fnu4HI	GCNGC	2 cut(s)	30, 63
FokI	GGATG	2 cut(s)	452, 675
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	2 cut(s)	30, 63
GlaI	GCGC	2 cut(s)	28, 383
GluI	GCNGC	2 cut(s)	30, 63
HaeII	RGCGCY	2 cut(s)	30, 385
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	4 cut(s)	128, 162, 288, 720
HgaI	GACGC	3 cut(s)	113, 161, 187
HhaI	GCGC	2 cut(s)	29, 384
Hin1I	GRCGYC	2 cut(s)	105, 198
Hin1II	CATG	3 cut(s)	55, 380, 644
Hin6I	GCGC	2 cut(s)	27, 382
HinP1I	GCGC	2 cut(s)	27, 382
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	97, 228
HpaII	CCGG	4 cut(s)	128, 162, 288, 720
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	3 cut(s)	235, 328, 734
Hpy188I	TCNGA	1 cut(s)	727
Hpy188III	TCNNGA	3 cut(s)	101, 275, 352
Hpy8I	GTNNAC	3 cut(s)	235, 328, 734
Hpy99I	CGWCG	4 cut(s)	23, 155, 197, 203
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	214, 594
HpyCH4IV	ACGT	2 cut(s)	6, 483
HpyCH4V	TGCA	5 cut(s)	235, 303, 458, 495, 662
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	2 cut(s)	6, 483
Hsp92I	GRCGYC	2 cut(s)	105, 198
Hsp92II	CATG	3 cut(s)	55, 380, 644
HspAI	GCGC	2 cut(s)	27, 382
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	654, 722
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	2 cut(s)	6, 483
MaeIII	GTNAC	5 cut(s)	101, 130, 461, 504, 583
MalI	GATC	2 cut(s)	656, 724
MboI	GATC	2 cut(s)	654, 722
MboII	GAAGA	3 cut(s)	412, 418, 718
MhlI	GDGCHC	2 cut(s)	237, 718
MluCI	AATT	4 cut(s)	14, 251, 339, 606
MnlI	CCTC	2 cut(s)	645, 702
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	5 cut(s)	93, 216, 254, 683, 760
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	4 cut(s)	128, 162, 288, 720
MspR9I	CCNGG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	305
MvnI	CGCG	1 cut(s)	155
NaeI	GCCGGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	720
NdeII	GATC	2 cut(s)	654, 722
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	55, 380, 644
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	3 cut(s)	101, 461, 583
OliI	CACNNNNGTG	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 243
PctI	GAATGC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	97, 228
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	31, 64
PspEI	GGTNACC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	5 cut(s)	93, 216, 254, 683, 760
SatI	GCNGC	2 cut(s)	30, 63
Sau3AI	GATC	2 cut(s)	654, 722
Sau96I	GGNCC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	2 cut(s)	237, 718
SetI	ASST	7 cut(s)	9, 222, 395, 486, 522, 573, 624
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	4 cut(s)	14, 251, 339, 606
SsiI	CCGC	4 cut(s)	30, 42, 60, 63
StyD4I	CCNGG	1 cut(s)	718
TaaI	ACNGT	2 cut(s)	214, 594
TaiI	ACGT	2 cut(s)	9, 486
TaqI	TCGA	7 cut(s)	18, 192, 246, 297, 353, 471, 694
TasI	AATT	4 cut(s)	14, 251, 339, 606
TauI	GCSGC	2 cut(s)	32, 65
TfiI	GAWTC	2 cut(s)	97, 228
Tru1I	TTAA	5 cut(s)	93, 216, 254, 683, 760
Tru9I	TTAA	5 cut(s)	93, 216, 254, 683, 760
TscAI	CASTG	3 cut(s)	126, 337, 441
TseFI	GTSAC	3 cut(s)	101, 461, 583
Tsp45I	GTSAC	3 cut(s)	101, 461, 583
TspDTI	ATGAA	3 cut(s)	40, 259, 365
TspGWI	ACGGA	2 cut(s)	36, 372
TspRI	CASTG	3 cut(s)	126, 337, 441
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	521
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	285
XmiI	GTMKAC	2 cut(s)	327, 733
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.