Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007119

Physical Location & Seq

Genomic Coordinates Forward (+)

15852780 .. 15865114

Gene Structure 12335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTGTGTCAGGAGCAAATAGACACTGCCGAAATCGAAGGAATCTCGAACGGAATGTACGTTCGGGTTCATGGGCGCTTGAAAACCTTTCAGGGGAAGAAGACCATACAAGTGTTCTCTGTTAGGCCTGTGGATGACTATAATGAGATTGCAAGCCACTTTATCGAGTGTATGTACGTACATTTCTTCAACAGCAAGTTACTGAAACCACAGGTTGGTGTAGGTGTCACAACTCAGCCATATATGACAATTCCACCAAATCAGGTATCTGGACAACATAGCCTCTATGGACAGAGGAACATTGAAGAAAGGGTCTTACAAGTTTTGAACCAGCCTTTATACCTTTCAAGGGATACGGGAGCAAACGCTGAGGATATTGCCCAACAACTGAAAGTACCAGTGAAAGATGTCATACATATGCTGCTACAAATCTTGCTAATAAGAGGACATCTATCATTAGATAGCAGAGGAAATTACATCAATCACATAGGATCTACATCCAATGTTCATCCTCACTTGGCAGGTGAAATAGCTAAGGCTGTACCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

183

Amino Acids

20.56

Weight (kDa)

7.13

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02920 AT3G02920 AT3G02920
fragaria_vesca	FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140
malus_domestica	MD13G1252800.v1.1
prunus_persica	Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1
pyrus_communis	pycom13g22520
rosa_chinensis	RchiOBHm_Chr4g0402271
rosa_laevigata	RLG00000009105
rosa_multiflora	Rmu_sc0002324.1_g000023 Rmu_sc0008199.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346990
rosa_rugosa	Rorug04G0034200
rosa_samantha	Rh4AG111500 Rh4BG104200 Rh4CG118500 Rh4DG102900 Rh4DG103400
rosa_wichuraiana	Rw4G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	215
AclWI	GGATC	1 cut(s)	499
AfaI	GTAC	5 cut(s)	59, 176, 180, 396, 543
AfiI	CCNNNNNNNGG	3 cut(s)	93, 215, 349
AgsI	TTSAA	5 cut(s)	82, 190, 305, 328, 348
AloI	GAACNNNNNNTCC	2 cut(s)	45, 77
AluBI	AGCT	1 cut(s)	533
AluI	AGCT	1 cut(s)	533
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	346
BfoI	RGCGCY	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	107
Bpu10I	CCTNAGC	2 cut(s)	369, 534
BsaAI	YACGTR	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 215, 349
Bse1I	ACTGG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	496
BseGI	GGATG	3 cut(s)	139, 497, 508
BseJI	GATNNNNATC	1 cut(s)	496
BseLI	CCNNNNNNNGG	3 cut(s)	93, 215, 349
BseMII	CTCAG	2 cut(s)	248, 360
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	408
BshFI	GGCC	1 cut(s)	127
BslI	CCNNNNNNNGG	3 cut(s)	93, 215, 349
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	491
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	247, 361
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	234, 369, 534
BstF5I	GGATG	3 cut(s)	139, 497, 508
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	491
BstSNI	TACGTA	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	139, 497, 508
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 405
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	78
Csp6I	GTAC	5 cut(s)	58, 175, 179, 395, 542
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	7 cut(s)	127, 156, 238, 282, 334, 533, 539
CviKI_1	RGCY	7 cut(s)	127, 156, 238, 282, 334, 533, 539
CviQI	GTAC	5 cut(s)	58, 175, 179, 395, 542
DdeI	CTNAG	3 cut(s)	234, 369, 534
DpnI	GATC	1 cut(s)	493
DpnII	GATC	1 cut(s)	491
Eco105I	TACGTA	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	127
FaeI	CATG	1 cut(s)	74
FatI	CATG	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	3 cut(s)	146, 484, 495
Fsp4HI	GCNGC	1 cut(s)	422
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	422
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	536
Hpy188III	TCNNGA	3 cut(s)	11, 46, 270
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	60, 177
HpyCH4V	TGCA	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	234, 369, 534
HpySE526I	ACGT	2 cut(s)	60, 177
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	491
LmnI	GCTCC	2 cut(s)	13, 359
LpnPI	CCDG	8 cut(s)	77, 141, 197, 248, 255, 344, 411, 507
Lsp1109I	GCAGC	1 cut(s)	408
MaeII	ACGT	2 cut(s)	60, 177
MaeIII	GTNAC	2 cut(s)	198, 226
MalI	GATC	1 cut(s)	493
MboI	GATC	1 cut(s)	491
MboII	GAAGA	4 cut(s)	109, 112, 178, 317
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	2 cut(s)	249, 472
MnlI	CCTC	6 cut(s)	288, 293, 364, 437, 461, 522
MslI	CAYNNNNRTG	2 cut(s)	110, 416
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	1 cut(s)	491
NlaIII	CATG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	423
Ppu21I	YACGTR	1 cut(s)	178
PsrI	GAACNNNNNNTAC	2 cut(s)	41, 73
PsuI	RGATCY	1 cut(s)	491
RsaI	GTAC	5 cut(s)	59, 176, 180, 396, 543
RsaNI	GTAC	5 cut(s)	58, 175, 179, 395, 542
RseI	CAYNNNNRTG	2 cut(s)	110, 416
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	110, 416
SnaBI	TACGTA	1 cut(s)	178
Sse9I	AATT	2 cut(s)	249, 472
SseBI	AGGCCT	1 cut(s)	127
StuI	AGGCCT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	63, 180
TaqI	TCGA	3 cut(s)	36, 47, 165
TasI	AATT	2 cut(s)	249, 472
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	2 cut(s)	31, 405
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	59, 497
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	31, 405
Van91I	CCANNNNNTGG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.