Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007119

Physical Location & Seq

Genomic Coordinates Forward (+)

46575958 .. 46581492

Gene Structure 5535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAACGTGAGCCAATTCGACGGAAGCGCCGCCTTCCACGGCGGTGGCTTTATGCCCCCGGCCGCCAACCCAACCCCCGAACACTCTTTCTTTCCTTCCAAGAACCGTGACGTCCAAACACTGCTTCCAGTAACCCTTAAGCAGATCAGCGACGCCATTGCCGGCGAAAATGGTAAAAGCGATTTCTCTATTGACGGCGTCGATGTGTCCACTGTTAAGCTTGTGGGAGTAGTGCAGGAGTTTGTTGGAAGATGTACAGATGCTACTTTCACTCTTGATGACGGGACCGGCAGGGTTGAATGCAACAGATGGTGTCAGGAGCAAATAGACACTGCCGAAATCGAAGGAATCTCGAACGGAATGTATGTTCGGGTTCATGGGCGCTTGAAAGCCTTTCAGGGGAAGAAGACCATTCAAGTGTTCTCTGTTAGGCCTGTGGATGACTATAATGAGATTGCAAGCCACTTTATCGAGTGTATGTACGTACATTTCTTCAACAGCAAGTTACCGAAATCACAGGTTGGTGTAGGTGTCACAACTCAGCCATATATGACAATTCCACCAAATCAGGTATCTGGACAATATAGCCTCTATGGACAGAGGAGCATTGAAGAAAGGGTCTTACAAGTTTTGAACCAGCCTTTATACCTTTCAAGGGATGTGGGAGCAAAAGCTGAGGATATTGCCCAACAACTGAAAGTACCAGTGAAAGATGTCATACATGCTGCTAGTAATCTTGCTCATGTAGGCAGTATTTACGAGATCGATACGTTGCACTATAAATCTCTTGCCAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

267

Amino Acids

29.21

Weight (kDa)

5.74

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	72 - 145	3.2e-09	OB-fold nucleic acid binding domain
RPA_C	PF08784	194 - 254	2.4e-06	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02920 AT3G02920 AT3G02920
fragaria_vesca	FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140
malus_domestica	MD13G1252800.v1.1
prunus_persica	Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1
pyrus_communis	pycom13g22520
rosa_chinensis	RchiOBHm_Chr4g0402271
rosa_laevigata	RLG00000009105
rosa_multiflora	Rmu_sc0002324.1_g000023 Rmu_sc0008199.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346990
rosa_rugosa	Rorug04G0034200
rosa_samantha	Rh4AG111500 Rh4BG104200 Rh4CG118500 Rh4DG102900 Rh4DG103400
rosa_wichuraiana	Rw4G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AciI	CCGC	3 cut(s)	30, 42, 63
AcoI	YGGCCR	1 cut(s)	60
AcyI	GRCGYC	3 cut(s)	111, 153, 198
AfaI	GTAC	4 cut(s)	256, 482, 486, 702
AfiI	CCNNNNNNNGG	2 cut(s)	399, 655
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	7 cut(s)	299, 388, 416, 496, 611, 634, 654
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AleI	CACNNNNGTG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	2 cut(s)	220, 674
AluI	AGCT	2 cut(s)	220, 674
AoxI	GGCC	2 cut(s)	60, 431
ApeKI	GCWGC	1 cut(s)	725
AspLEI	GCGC	2 cut(s)	29, 384
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	1 cut(s)	303
BceAI	ACGGC	2 cut(s)	55, 211
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcnI	CCSGG	1 cut(s)	59
BfaI	CTAG	1 cut(s)	729
BfoI	RGCGCY	2 cut(s)	30, 385
BfrI	CTTAAG	1 cut(s)	137
BisI	GCNGC	3 cut(s)	30, 63, 726
BlsI	GCNGC	3 cut(s)	31, 64, 727
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	765
BsaAI	YACGTR	1 cut(s)	484
BsaHI	GRCGYC	3 cut(s)	111, 153, 198
BsaJI	CCNNGG	2 cut(s)	37, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 655
Bse118I	RCCGGY	2 cut(s)	161, 287
Bse1I	ACTGG	2 cut(s)	128, 704
Bse3DI	GCAATG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	37, 57
BseGI	GGATG	2 cut(s)	445, 664
BseLI	CCNNNNNNNGG	2 cut(s)	399, 655
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	554, 666
BseNI	ACTGG	2 cut(s)	128, 704
BseRI	GAGGAG	1 cut(s)	616
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	62, 433
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	59, 162, 288
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	399, 655
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	62, 433
Bsp1407I	TGTACA	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	144, 762
BspACI	CCGC	3 cut(s)	30, 42, 63
BspANI	GGCC	2 cut(s)	62, 433
BspCNI	CTCAG	2 cut(s)	553, 667
BspDI	ATCGAT	1 cut(s)	765
BspLI	GGNNCC	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	156
BsrFI	RCCGGY	2 cut(s)	161, 287
BsrGI	TGTACA	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	128, 704
BssAI	RCCGGY	2 cut(s)	161, 287
BssECI	CCNNGG	2 cut(s)	37, 57
BssMI	GATC	2 cut(s)	144, 762
BssNI	GRCGYC	3 cut(s)	111, 153, 198
Bst4CI	ACNGT	2 cut(s)	107, 214
BstACI	GRCGYC	3 cut(s)	111, 153, 198
BstAFI	CTTAAG	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	163, 460
BstDEI	CTNAG	2 cut(s)	540, 675
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	445, 664
BstH2I	RGCGCY	2 cut(s)	30, 385
BstHHI	GCGC	2 cut(s)	29, 384
BstKTI	GATC	2 cut(s)	147, 765
BstMBI	GATC	2 cut(s)	144, 762
BstMCI	CGRYCG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	57
BstSNI	TACGTA	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	1 cut(s)	413
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	62, 433
BsuTUI	ATCGAT	1 cut(s)	765
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	445, 664
BtsI	GCAGTG	2 cut(s)	119, 330
BtsIMutI	CAGTG	4 cut(s)	119, 210, 330, 711
Cac8I	GCNNGC	2 cut(s)	163, 460
CfoI	GCGC	2 cut(s)	29, 384
Cfr10I	RCCGGY	2 cut(s)	161, 287
Cfr13I	GGNCC	1 cut(s)	285
ClaI	ATCGAT	1 cut(s)	765
CseI	GACGC	2 cut(s)	161, 187
Csp6I	GTAC	4 cut(s)	255, 481, 485, 701
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	3 cut(s)	377, 722, 743
CviQI	GTAC	4 cut(s)	255, 481, 485, 701
DdeI	CTNAG	2 cut(s)	540, 675
DpnI	GATC	2 cut(s)	146, 764
DpnII	GATC	2 cut(s)	144, 762
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	60
Eco105I	TACGTA	1 cut(s)	484
Eco147I	AGGCCT	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	285
Eco52I	CGGCCG	1 cut(s)	60
FaeI	CATG	3 cut(s)	380, 725, 746
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	376, 721, 742
Fnu4HI	GCNGC	3 cut(s)	30, 63, 726
FokI	GGATG	2 cut(s)	452, 671
Fsp4HI	GCNGC	3 cut(s)	30, 63, 726
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	2 cut(s)	28, 383
GluI	GCNGC	3 cut(s)	30, 63, 726
HaeII	RGCGCY	2 cut(s)	30, 385
HaeIII	GGCC	2 cut(s)	62, 433
HapII	CCGG	3 cut(s)	59, 162, 288
HgaI	GACGC	2 cut(s)	161, 187
HhaI	GCGC	2 cut(s)	29, 384
Hin1I	GRCGYC	3 cut(s)	111, 153, 198
Hin1II	CATG	3 cut(s)	380, 725, 746
Hin6I	GCGC	2 cut(s)	27, 382
HinP1I	GCGC	2 cut(s)	27, 382
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	3 cut(s)	59, 162, 288
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188III	TCNNGA	4 cut(s)	275, 317, 352, 576
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	3 cut(s)	23, 155, 203
HpyAV	CCTTC	3 cut(s)	43, 105, 338
HpyCH4III	ACNGT	2 cut(s)	107, 214
HpyCH4IV	ACGT	4 cut(s)	6, 111, 483, 770
HpyCH4V	TGCA	4 cut(s)	235, 303, 458, 775
HpyF3I	CTNAG	2 cut(s)	540, 675
HpySE526I	ACGT	4 cut(s)	6, 111, 483, 770
Hsp92I	GRCGYC	3 cut(s)	111, 153, 198
Hsp92II	CATG	3 cut(s)	380, 725, 746
HspAI	GCGC	2 cut(s)	27, 382
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	144, 762
LmnI	GCTCC	3 cut(s)	319, 603, 665
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	4 cut(s)	6, 111, 483, 770
MaeIII	GTNAC	4 cut(s)	107, 130, 504, 532
MalI	GATC	2 cut(s)	146, 764
MboI	GATC	2 cut(s)	144, 762
MboII	GAAGA	5 cut(s)	261, 415, 418, 484, 623
MluCI	AATT	2 cut(s)	14, 555
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	594, 599, 670
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	2 cut(s)	138, 216
MslI	CAYNNNNRTG	2 cut(s)	42, 416
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	3 cut(s)	59, 162, 288
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	305
NaeI	GCCGGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	144, 762
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	380, 725, 746
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	107, 532
NspI	RCATGY	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	433
PctI	GAATGC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	348
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	31, 64, 727
Ppu21I	YACGTR	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	4 cut(s)	256, 482, 486, 702
RsaNI	GTAC	4 cut(s)	255, 481, 485, 701
RseI	CAYNNNNRTG	2 cut(s)	42, 416
SaqAI	TTAA	2 cut(s)	138, 216
SatI	GCNGC	3 cut(s)	30, 63, 726
Sau3AI	GATC	2 cut(s)	144, 762
Sau96I	GGNCC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	42, 416
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SnaBI	TACGTA	1 cut(s)	484
Sse9I	AATT	2 cut(s)	14, 555
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	3 cut(s)	30, 42, 63
SspMI	CTAG	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	107, 214
TaiI	ACGT	4 cut(s)	9, 114, 486, 773
TaqI	TCGA	6 cut(s)	18, 201, 342, 353, 471, 765
TasI	AATT	2 cut(s)	14, 555
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	2 cut(s)	32, 65
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	2 cut(s)	138, 216
Tru9I	TTAA	2 cut(s)	138, 216
TscAI	CASTG	4 cut(s)	126, 217, 337, 711
TseFI	GTSAC	2 cut(s)	107, 532
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	2 cut(s)	107, 532
TspDTI	ATGAA	2 cut(s)	17, 365
TspGWI	ACGGA	2 cut(s)	36, 372
TspRI	CASTG	4 cut(s)	126, 217, 337, 711
Tth111I	GACNNNGTC	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	285
XceI	RCATGY	1 cut(s)	725
XspI	CTAG	1 cut(s)	729
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.