Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007119

Physical Location & Seq

Genomic Coordinates Reverse (-)

6324571 .. 6330136

Gene Structure 5566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G085000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGCTTCACCCAATTCGATGGCACTGCGGCGTTCTCTGGCGGTGGCTTCATGCCCCCTCAGGCCACCCAGACAGCCGATCCCTCTTTCAATACCTCCAAGAATCGTGACGTTCAGACATTGCTGCCACTTACAGTAAAGCAGATAAAGGATGCATTTGTCTCAGCAAATGAAAAATCAGAATTTGTTATTGACGGTGTTGACGTGAACAATGTTACACTTGTGGGGATGGTCCGTGACAAAGTTGGAAGAATTACGGATGTTGCTTTCATTCTTGACGATGGGACTGGACGGTTGGATTGTAACAAGTGGTTTGATGAAGCAATAGACGCAAATGAAATGGAAAGAATCTTGGATGGAATGTATGTCCGGGTTCATGGACGCTTGAAGAGCTTTCAGGGCAAAAAGACCTTAAATGTCTTCTCTATTAGGCCTGTGAATGACTATAATGAGATTGCAAGCCACTTCATTGAGTGTATATACGTCCATGTCTACAACAGCAGGTTACAGAAAGCACATGTTGATGTTGGCGTCACTACTCAACCACATATGACAATCCCAACAAATCAGTTTTCTGGCCAATATAGCTTCGATGGACAGAGTAGCACTGAAGTAAAGGTCTTAGAAATTTTGAGCCAGCCTTCATACCTTGGAAGGGAAGAGGGGGCACACCTTGATGATATAGCCCGACAACTGAAAATTCCAGTGAATGATCTCATGTTAGCTGTTGATAATCTAGTACAGGAAGGCAAAGTTTACTCAACAGTTGATGACTTTCACTTCAAATCAACTGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

268

Amino Acids

29.72

Weight (kDa)

5.13

Isoelectric Point (pI)

26.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02920 AT3G02920 AT3G02920
fragaria_vesca	FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140 FvH4_4g08140
malus_domestica	MD13G1252800.v1.1
prunus_persica	Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1 Prupe.1G085000_v2.0.a1
pyrus_communis	pycom13g22520
rosa_chinensis	RchiOBHm_Chr4g0402271
rosa_laevigata	RLG00000009105
rosa_multiflora	Rmu_sc0002324.1_g000023 Rmu_sc0008199.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346990
rosa_rugosa	Rorug04G0034200
rosa_samantha	Rh4AG111500 Rh4BG104200 Rh4CG118500 Rh4DG102900 Rh4DG103400
rosa_wichuraiana	Rw4G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	492
AciI	CCGC	2 cut(s)	29, 42
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	3 cut(s)	182, 627, 699
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	1 cut(s)	655
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	91, 388, 784
AjiI	CACGTC	1 cut(s)	205
AluBI	AGCT	4 cut(s)	6, 393, 588, 725
AluI	AGCT	4 cut(s)	6, 393, 588, 725
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	3 cut(s)	63, 431, 577
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	3 cut(s)	182, 627, 699
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	670
BalI	TGGCCA	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	5 cut(s)	14, 223, 275, 350, 587
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	2 cut(s)	30, 125
BlsI	GCNGC	2 cut(s)	31, 126
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	292, 704
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	4 cut(s)	157, 234, 265, 361
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	74, 177
BseNI	ACTGG	2 cut(s)	292, 704
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	1 cut(s)	111
BshFI	GGCC	3 cut(s)	65, 433, 579
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	65, 433, 579
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	79, 712
BspACI	CCGC	2 cut(s)	29, 42
BspANI	GGCC	3 cut(s)	65, 433, 579
BspCNI	CTCAG	2 cut(s)	73, 176
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	292, 704
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	2 cut(s)	79, 712
BssNI	GRCGYC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	649
Bst4CI	ACNGT	4 cut(s)	136, 197, 294, 766
Bst6I	CTCTTC	2 cut(s)	383, 654
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	460, 638
BstDEI	CTNAG	3 cut(s)	60, 163, 622
BstF5I	GGATG	4 cut(s)	157, 234, 265, 361
BstKTI	GATC	2 cut(s)	82, 715
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	79, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 390, 399, 585
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	65, 433, 579
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	4 cut(s)	157, 234, 265, 361
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 606, 711
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	460, 638
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	3 cut(s)	338, 390, 520
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	5 cut(s)	52, 377, 488, 518, 718
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	3 cut(s)	60, 163, 622
DpnI	GATC	2 cut(s)	81, 714
DpnII	GATC	2 cut(s)	79, 712
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	383, 654
EarI	CTCTTC	2 cut(s)	383, 654
Eco130I	CCWWGG	1 cut(s)	649
Eco147I	AGGCCT	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	649
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	5 cut(s)	55, 380, 491, 521, 721
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	51, 376, 487, 517, 717
FauNDI	CATATG	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	30, 125
FokI	GGATG	4 cut(s)	164, 241, 272, 368
Fsp4HI	GCNGC	2 cut(s)	30, 125
FspBI	CTAG	1 cut(s)	737
GluI	GCNGC	2 cut(s)	30, 125
HaeIII	GGCC	3 cut(s)	65, 433, 579
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	3 cut(s)	338, 390, 520
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	55, 380, 491, 521, 721
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	103, 348
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	4 cut(s)	202, 208, 493, 757
Hpy188I	TCNGA	2 cut(s)	117, 181
Hpy188III	TCNNGA	2 cut(s)	107, 275
Hpy8I	GTNNAC	4 cut(s)	202, 208, 493, 757
HpyAV	CCTTC	3 cut(s)	648, 651, 740
HpyCH4III	ACNGT	4 cut(s)	136, 197, 294, 766
HpyCH4IV	ACGT	3 cut(s)	111, 204, 483
HpyCH4V	TGCA	2 cut(s)	155, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 390, 399, 585
HpyF3I	CTNAG	3 cut(s)	60, 163, 622
HpySE526I	ACGT	3 cut(s)	111, 204, 483
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	55, 380, 491, 521, 721
Kzo9I	GATC	2 cut(s)	79, 712
LguI	GCTCTTC	1 cut(s)	383
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	3 cut(s)	111, 204, 483
MaeIII	GTNAC	6 cut(s)	107, 214, 236, 302, 504, 532
MalI	GATC	2 cut(s)	81, 714
MboI	GATC	2 cut(s)	79, 712
MboII	GAAGA	4 cut(s)	261, 400, 412, 671
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	5 cut(s)	14, 182, 252, 627, 699
MluNI	TGGCCA	1 cut(s)	579
MmeI	TCCRAC	2 cut(s)	226, 276
MnlI	CCTC	4 cut(s)	69, 94, 106, 655
Mox20I	TGGCCA	1 cut(s)	579
Mph1103I	ATGCAT	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	2 cut(s)	522, 675
Msp20I	TGGCCA	1 cut(s)	579
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	4 cut(s)	329, 390, 399, 585
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	2 cut(s)	79, 712
NlaIII	CATG	5 cut(s)	55, 380, 491, 521, 721
NmuCI	GTSAC	3 cut(s)	107, 236, 532
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	433
PciI	ACATGT	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	103, 348
PkrI	GCNGC	2 cut(s)	31, 126
PscI	ACATGT	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	2 cut(s)	522, 675
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	2 cut(s)	30, 125
Sau3AI	GATC	2 cut(s)	79, 712
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	522, 675
Sse9I	AATT	5 cut(s)	14, 182, 252, 627, 699
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	2 cut(s)	29, 42
SspMI	CTAG	1 cut(s)	737
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	4 cut(s)	136, 197, 294, 766
TaiI	ACGT	3 cut(s)	114, 207, 486
TaqI	TCGA	2 cut(s)	18, 591
TasI	AATT	5 cut(s)	14, 182, 252, 627, 699
TatI	WGTACW	1 cut(s)	739
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	103, 348
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	3 cut(s)	31, 613, 711
TseFI	GTSAC	3 cut(s)	107, 236, 532
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	3 cut(s)	107, 236, 532
TspDTI	ATGAA	8 cut(s)	40, 186, 259, 333, 351, 365, 457, 633
TspGWI	ACGGA	2 cut(s)	224, 272
TspRI	CASTG	3 cut(s)	31, 613, 711
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	3 cut(s)	182, 627, 699
XceI	RCATGY	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	1 cut(s)	737
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.