Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009020

Physical Location & Seq

Genomic Coordinates Reverse (-)

54032966 .. 54036074

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0394900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCAGGGGCGGCAATAGCGGTGGGTTACTCAAGCTCGTGGGCCCGCGCCCTCGTCCAGATCTCTCCCTACACTTTCTCCGCCGTCGGTATTGCCATATCTATCGGCGTCTCTGTCCTCGGCGCCGCCTGGGGGATTTACATCACTGGGAGCAGTTTGATCGGCGCAGCAATCAAGGCTCCTCGCATCACTTCCAAGAATCTCATCAGTGTGATCTTTTGTGAAGCTGTTGCTATATATGGTGTTATTGTTGCAATCATTTTACAAACAAAGCTCGAGAGTGTTCCTGCGTCAAGGATATATGAACCTGAATCTCTTAGAGCTGGATATGCAATCTTTGCGTCTGGGATCATTGTGGGATTTGCGAACCTTTTCTGCGGGTTATGCGTGGGAATTATTGGAAGCAGCTGTGCATTGTCCGATGCCCAAAACTCCACACTTTTTGTGAAGATCCTTGTGATTGAGATCTTTGGCAGCGCCCTTGGATTATTTGGAGTAATTGTTGGAATCATAATGTCAGCTCAAGCAACATGGCCTACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA Nucleolin_bd

Protein Analysis

181

Amino Acids

18.6

Weight (kDa)

8.75

Isoelectric Point (pI)

27.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	30 - 88	1.5e-16	ATP synthase subunit C
ATP-synt_C	PF00137	113 - 172	9.8e-13	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01610 AT3G01610
rosa_chinensis	RchiOBHm_Chr4g0402331 RchiOBHm_Chr6g0312291 RchiOBHm_Chr6g0312371
rosa_laevigata	RLG00000009102 RLG00000010332
rosa_multiflora	Rmu_sc0002324.1_g000017 Rmu_ssc0000424.1_g000018
rosa_roxburghii	Rroxscaffold_5G00347010 Rroxscaffold_7G00156860
rosa_rugosa	Rorug04G0034200 Rorug06G0394900
rosa_samantha	Rh4AG111900 Rh4BG104600 Rh4CG118800 Rh6AG511900 Rh6AG512400 Rh6BG523200 Rh6DG514600
rosa_wichuraiana	Rw4G008980 Rw6G044540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	1 cut(s)	48
AciI	CCGC	6 cut(s)	11, 20, 46, 81, 126, 378
AclWI	GGATC	2 cut(s)	356, 445
AcyI	GRCGYC	2 cut(s)	108, 123
AfiI	CCNNNNNNNGG	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	6 cut(s)	36, 227, 274, 323, 408, 521
AluI	AGCT	6 cut(s)	36, 227, 274, 323, 408, 521
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	356, 445
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	42, 533
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	167, 405, 474
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	4 cut(s)	50, 125, 167, 479
AspS9I	GGNCC	2 cut(s)	42, 43
AvaI	CYCGRG	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	179, 417, 486
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	115
BfoI	RGCGCY	2 cut(s)	126, 480
BglII	AGATCT	2 cut(s)	60, 465
BisI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
BlsI	GCNGC	5 cut(s)	13, 127, 169, 407, 476
Bme1390I	CCNGG	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	42, 43
BmiI	GGNNCC	3 cut(s)	44, 124, 180
BmrFI	CCNGG	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	195, 412
BmuI	ACTGGG	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	16, 507
BsaBI	GATNNNNATC	2 cut(s)	140, 464
BsaHI	GRCGYC	2 cut(s)	108, 123
BsaJI	CCNNGG	3 cut(s)	118, 129, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	151
Bse8I	GATNNNNATC	2 cut(s)	140, 464
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	118, 129, 481
BseJI	GATNNNNATC	2 cut(s)	140, 464
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	179, 417, 486
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	44, 535
BshNI	GGYRCC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	44, 535
BsoBI	CYCGRG	1 cut(s)	275
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
BspACI	CCGC	6 cut(s)	11, 20, 46, 81, 126, 378
BspANI	GGCC	2 cut(s)	44, 535
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	44, 124, 180
BspPI	GGATC	2 cut(s)	356, 445
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	118, 129, 481
BssMI	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
BssNI	GRCGYC	2 cut(s)	108, 123
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	108, 123
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	2 cut(s)	126, 480
BstHHI	GCGC	4 cut(s)	50, 125, 167, 479
BstKTI	GATC	6 cut(s)	63, 162, 216, 351, 453, 468
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 176, 329, 338, 384
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	179, 417, 486
BstX2I	RGATCY	3 cut(s)	60, 450, 465
BstYI	RGATCY	3 cut(s)	60, 450, 465
BsuRI	GGCC	2 cut(s)	44, 535
BtsIMutI	CAGTG	2 cut(s)	144, 214
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	4 cut(s)	50, 125, 167, 479
Cfr13I	GGNCC	2 cut(s)	42, 43
CseI	GACGC	3 cut(s)	97, 279, 330
CspCI	CAANNNNNGTGG	3 cut(s)	38, 424, 459
CviAII	CATG	1 cut(s)	531
CviJI	RGCY	9 cut(s)	36, 44, 179, 227, 274, 323, 408, 521, 535
CviKI_1	RGCY	9 cut(s)	36, 44, 179, 227, 274, 323, 408, 521, 535
DdeI	CTNAG	1 cut(s)	317
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	6 cut(s)	62, 161, 215, 350, 452, 467
DpnII	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	481
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	534
FatI	CATG	1 cut(s)	530
FauI	CCCGC	2 cut(s)	53, 371
Fnu4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
GlaI	GCGC	4 cut(s)	49, 124, 166, 478
GluI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
HaeII	RGCGCY	2 cut(s)	126, 480
HaeIII	GGCC	2 cut(s)	44, 535
HgaI	GACGC	3 cut(s)	97, 279, 330
HhaI	GCGC	4 cut(s)	50, 125, 167, 479
Hin1I	GRCGYC	2 cut(s)	108, 123
Hin1II	CATG	1 cut(s)	534
Hin6I	GCGC	4 cut(s)	48, 123, 165, 477
HinP1I	GCGC	4 cut(s)	48, 123, 165, 477
HinfI	GANTC	3 cut(s)	199, 311, 507
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	58, 277
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	254, 332, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 176, 329, 338, 384
HpyF3I	CTNAG	1 cut(s)	317
Hsp92I	GRCGYC	2 cut(s)	108, 123
Hsp92II	CATG	1 cut(s)	534
HspAI	GCGC	4 cut(s)	48, 123, 165, 477
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
LmnI	GCTCC	2 cut(s)	150, 184
LpnPI	CCDG	8 cut(s)	71, 115, 132, 142, 300, 309, 321, 330
Lsp1109I	GCAGC	3 cut(s)	179, 417, 486
LweI	GCATC	2 cut(s)	195, 412
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	6 cut(s)	62, 161, 215, 350, 452, 467
MboI	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
MboII	GAAGA	1 cut(s)	460
MflI	RGATCY	3 cut(s)	60, 450, 465
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	393, 498
Mly113I	GGCGCC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	3 cut(s)	62, 128, 192
MroXI	GAANNNNTTC	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	5 cut(s)	17, 176, 329, 338, 384
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	3 cut(s)	44, 124, 180
NmeAIII	GCCGAG	1 cut(s)	99
PaeR7I	CTCGAG	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	3 cut(s)	199, 311, 507
PkrI	GCNGC	5 cut(s)	13, 127, 169, 407, 476
PluTI	GGCGCC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	44, 124, 180
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	42, 43
PsuI	RGATCY	3 cut(s)	60, 450, 465
PvuII	CAGCTG	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
Sau3AI	GATC	6 cut(s)	60, 159, 213, 348, 450, 465
Sau96I	GGNCC	2 cut(s)	42, 43
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	38, 229, 276, 310, 325, 372, 410, 523
SfaNI	GCATC	2 cut(s)	195, 412
SfoI	GGCGCC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	3 cut(s)	31, 275, 522
SmoI	CTYRAG	3 cut(s)	31, 275, 522
Sse9I	AATT	2 cut(s)	393, 498
SsiI	CCGC	6 cut(s)	11, 20, 46, 81, 126, 378
SspDI	GGCGCC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	481
TaqI	TCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	393, 498
TauI	GCSGC	2 cut(s)	14, 128
TfiI	GAWTC	3 cut(s)	199, 311, 507
TscAI	CASTG	2 cut(s)	151, 214
TseI	GCWGC	3 cut(s)	167, 405, 474
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	151, 214
XhoI	CTCGAG	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.