Rroxscaffold_7G00156860

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009020
Physical Location & Seq
Forward (+)
776972 .. 778267
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156860.1

Sequence Viewer

Length: 495 bp
ATGGGTTGTTCAGCGGCTATTGAAGCAGAGTTTGATGGTGGAGAGAAGCGGCAAGGTACCCGTGATGACCCTGCTATTTTACGGTCCGGAAGGTTCGGTAAACAAATACTTGTCTCCCTGCCCGATAAAGACGAGCGTGGTTCAATCCTGAAAGCTCTTGCAAGGAAAAAACATATAGATCCCAGCGTAGATCTGTGTGAGATTGCACAAGGATGTGAAAACTTCAGTGGAGCTGATCTTGCTATGCTGATGAGTAGAGCTTCTAAGCTTTCTAAAGCTGAGGCATTTGAGGAATTTATAGCAACTGGTGGGAGTTCAGATGCACCACCACCATCGATTATCAACAATATTCACTTTGAGCAAGCACGAGCTACAATCACACCATTATCCATCGAGAAAATTCGTTGGTACCAGAATTTTGGAGAGGAAGAACAAAAGACTCCCCGTGAACGCTGTGTTCAAGGATTCATGGACTTTGCGGCACCGAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

164

Amino Acids

18.02

Weight (kDa)

5.51

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_3 PF17862 62 - 89 1.4e-06 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 56, 408
AccB1I GGYRCC 3 cut(s) 56, 408, 481
AccIII TCCGGA 1 cut(s) 86
AciI CCGC 3 cut(s) 14, 49, 479
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 3 cut(s) 293, 399, 415
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 2 cut(s) 58, 410
AgsI TTSAA 3 cut(s) 23, 144, 461
AluBI AGCT 6 cut(s) 155, 233, 260, 268, 278, 371
AluI AGCT 6 cut(s) 155, 233, 260, 268, 278, 371
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 86
ApoI RAATTY 3 cut(s) 293, 399, 415
Asp718I GGTACC 2 cut(s) 56, 408
AspS9I GGNCC 1 cut(s) 84
AvaII GGWCC 1 cut(s) 84
BanI GGYRCC 3 cut(s) 56, 408, 481
BauI CACGAG 1 cut(s) 366
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 3 cut(s) 29, 340, 398
BcoDI GTCTC 1 cut(s) 118
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 15, 50, 480
BlsI GCNGC 3 cut(s) 16, 51, 481
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 3 cut(s) 58, 410, 483
BmsI GCATC 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 86
BseCI ATCGAT 1 cut(s) 335
BseGI GGATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 182
BshNI GGYRCC 3 cut(s) 56, 408, 481
BshVI ATCGAT 1 cut(s) 335
BsiSI CCGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 118
Bsp13I TCCGGA 1 cut(s) 86
Bsp143I GATC 3 cut(s) 178, 190, 235
BspACI CCGC 3 cut(s) 14, 49, 479
BspCNI CTCAG 1 cut(s) 271
BspDI ATCGAT 1 cut(s) 335
BspEI TCCGGA 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 58, 410, 483
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 3 cut(s) 56, 408, 481
BsrI ACTGG 1 cut(s) 310
BssMI GATC 3 cut(s) 178, 190, 235
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 264, 279
BstF5I GGATG 1 cut(s) 218
BstKTI GATC 3 cut(s) 181, 193, 238
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 178, 190, 235
BstMWI GCNNNNNNNGC 2 cut(s) 23, 239
BstX2I RGATCY 2 cut(s) 178, 190
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 2 cut(s) 178, 190
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 335
CpoI CGGWCCG 1 cut(s) 84
Csp6I GTAC 2 cut(s) 57, 409
CspI CGGWCCG 1 cut(s) 84
CviAII CATG 1 cut(s) 469
CviJI RGCY 7 cut(s) 17, 155, 233, 260, 268, 278, 371
CviKI_1 RGCY 7 cut(s) 17, 155, 233, 260, 268, 278, 371
CviQI GTAC 2 cut(s) 57, 409
DdeI CTNAG 2 cut(s) 264, 279
DpnI GATC 3 cut(s) 180, 192, 237
DpnII GATC 3 cut(s) 178, 190, 235
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 208
FaeI CATG 1 cut(s) 472
FaiI YATR 5 cut(s) 174, 176, 245, 299, 470
FatI CATG 1 cut(s) 468
Fnu4HI GCNGC 3 cut(s) 15, 50, 480
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 15, 50, 480
GluI GCNGC 3 cut(s) 15, 50, 480
GsaI CCCAGC 1 cut(s) 186
HapII CCGG 1 cut(s) 87
Hin1II CATG 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 439, 465
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 101, 449
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 3 cut(s) 87, 148, 394
Hpy8I GTNNAC 2 cut(s) 101, 449
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 161, 206, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 239
HpyF3I CTNAG 2 cut(s) 264, 279
Hsp92II CATG 1 cut(s) 472
Kpn2I TCCGGA 1 cut(s) 86
KpnI GGTACC 2 cut(s) 60, 412
Kzo9I GATC 3 cut(s) 178, 190, 235
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 7 cut(s) 84, 100, 131, 161, 196, 291, 425
LweI GCATC 1 cut(s) 310
MalI GATC 3 cut(s) 180, 192, 237
MboI GATC 3 cut(s) 178, 190, 235
MboII GAAGA 1 cut(s) 440
MflI RGATCY 2 cut(s) 178, 190
MluCI AATT 3 cut(s) 293, 399, 415
MlyI GAGTC 1 cut(s) 433
MnlI CCTC 3 cut(s) 274, 283, 418
MroI TCCGGA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 23, 239
NdeII GATC 3 cut(s) 178, 190, 235
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 3 cut(s) 58, 410, 483
PfeI GAWTC 1 cut(s) 465
PkrI GCNGC 3 cut(s) 16, 51, 481
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 58, 410, 483
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 178, 190
RsaI GTAC 2 cut(s) 58, 410
RsaNI GTAC 2 cut(s) 57, 409
RseI CAYNNNNRTG 1 cut(s) 211
Rsr2I CGGWCCG 1 cut(s) 84
RsrII CGGWCCG 1 cut(s) 84
SatI GCNGC 3 cut(s) 15, 50, 480
Sau3AI GATC 3 cut(s) 178, 190, 235
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 433
SetI ASST 8 cut(s) 58, 95, 157, 235, 262, 270, 280, 373
SfaNI GCATC 1 cut(s) 310
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 211
Sse9I AATT 3 cut(s) 293, 399, 415
SsiI CCGC 3 cut(s) 14, 49, 479
SspI AATATT 1 cut(s) 349
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 335, 393
TasI AATT 3 cut(s) 293, 399, 415
TauI GCSGC 3 cut(s) 17, 52, 482
TfiI GAWTC 1 cut(s) 465
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 457
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 3 cut(s) 293, 399, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.