Rh6BG523200

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009020
Physical Location & Seq
Reverse (-)
71564361 .. 71568117
3757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG523200.1

Sequence Viewer

Length: 1545 bp
ATGGCCGACGGAAACAAGAGCCAAGTAAGAAGAAGTCCTCAAAGCAGGAGAGCCCAACTCGTAGCCCTCAGTCGTCAACGTATAGAGCTCAAGAGAACCAGCCGTCTAAAGCAGAAGACCAAGAAGAATATGATGAAGGAGTTGAGCCAACAACAACTTGGAGGAGTTGGGGCCAAAAGGCCGAGGATTAATCACGGCTCCTGTGATGATATTGATGACGACGAGGCAGGGTCGTCATCCGTTGAATGTACTGATTTTTTGAGTTCGTCACTGCAAGCGAGTTACAGGGAATTGAACCAGAAGAAGAAGAAGAATAAGAGGGTGAGGAAGAATGTCGAATCGGAGCGAGCCGTTCCAGAAAGTCGGAGAGAAGCAGGCAAGAGTGATGCAGAGGAGGCAGGGCCATCGGTTGTGAGGTTCAGTGACTTCGGCGGCATAGACAAGGTGATAGAGGAGCTCAACAAGGAGGTCATTGTGCCTTTTAGCAATCATAGGCTGGGAGCTTACCTGCTAGGTAAGCCAATGCCGATGCCTGGAATATTGCTGTCCGGACCACCCGGCTGTGGCAAGACTAAATTGGCTCAGGCTATTGCCAATGAACTAGCTCTACCTTCCACAAGATTTCAGCCCCCTCACTCGTCTCCAGCGTCACAGGCCAGGTTCCACATTCTTTCTCTGCTTCTAAAACATCCAAGACTTGAAGGTTCGTTTGATCTTCATAAACTAGCCAGGGCTACATCAGGGTTTGTTGGAGCTGATTTGGAAACACTGGTCATCAAGGCTGTCAAGATTGCTGAGAATAGGATTGTAAACAACAACAAGGCTGATAGGTCTATATATGCGCCTGAAGAAATGAAAAACTACTCCATCTCTATGAATGATTTTGAGATGTTATTATTATGTGATATTCTACAGGAAGCAGTTCAAGCTATTCAGCCTTCTTTAAAAAGAGAAGGATTCAATGCAATTCCTGATGTGGACTCTATAACAACTAAGGAGAGTGAAGGGTCATGGATTGTTCAGCGGCTATTGAAGCAGTTTCTAATAGAGTTTGATGGTGGAGAGAAACGGCAAGGTGTATTTATAATTGGTGCCACTAATAGACCCGATCAAATGGACCCTGCTATGTTACGGTCCGGAAGGTTCGGTAAACAAATACTTGTCTCCCTGCCCGATAAAGACGAGCGTGGTTCAATCTTGAAAGCTCTTGCAAGGAAAAAACATATAGATCCCAGCGTAGATCTGTGTGAGATTGCACAAGGATGTGAAAACTTCAGTGGAGCTGATCTTGCTATGCTGATGAGTAGAGCTTCTAAGCTTTCTAAAGCTGAGACATTTGAGGAATTTATAGCAACTGGTGGGAGTTCAGATGCACCACCACCATCGATTATCAACAATATTCACTTTGAGCAAGCACGAGCTACAATCACACCATTATCCATCGAGAAAATTCGTTGGTACCAGAATTTTGGAGAGGAAGAACAAAAGACTCCCCGTGAACACTGTGTTAAAGGATTCATGGACTTCGCGGCACCGAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

514

Amino Acids

57.05

Weight (kDa)

9.17

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 180 - 207 7.3e-06 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 237 - 271 9.8e-08 AAA+ lid domain
AAA PF00004 323 - 389 9.5e-11 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 412 - 439 6.8e-06 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 516
Acc65I GGTACC 1 cut(s) 1458
AccB1I GGYRCC 3 cut(s) 1091, 1458, 1531
AccII CGCG 1 cut(s) 1529
AccIII TCCGGA 2 cut(s) 548, 1136
AciI CCGC 3 cut(s) 432, 1024, 1529
AclWI GGATC 1 cut(s) 1223
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 1343, 1449, 1465
AcuI CTGAAG 2 cut(s) 867, 1258
AfaI GTAC 2 cut(s) 250, 1460
AfiI CCNNNNNNNGG 2 cut(s) 533, 563
AgsI TTSAA 8 cut(s) 245, 295, 701, 926, 961, 1033, 1194, 1201
AjnI CCWGG 3 cut(s) 532, 656, 728
Alw21I GWGCWC 2 cut(s) 90, 459
Alw26I GTCTC 3 cut(s) 645, 1168, 1325
AlwI GGATC 1 cut(s) 1223
Aor13HI TCCGGA 2 cut(s) 548, 1136
AoxI GGCC 5 cut(s) 3, 171, 179, 401, 654
ApoI RAATTY 3 cut(s) 1343, 1449, 1465
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 921
Asp718I GGTACC 1 cut(s) 1458
AspLEI GCGC 1 cut(s) 844
AspS9I GGNCC 5 cut(s) 171, 401, 551, 1117, 1134
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 2 cut(s) 334, 457
AvaII GGWCC 3 cut(s) 551, 1117, 1134
BanI GGYRCC 3 cut(s) 1091, 1458, 1531
BanII GRGCYC 3 cut(s) 55, 90, 459
BauI CACGAG 1 cut(s) 1416
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 90, 459
BccI CCATC 5 cut(s) 412, 875, 1049, 1390, 1448
BceAI ACGGC 4 cut(s) 87, 211, 335, 1085
BcgI CGANNNNNNTGC 2 cut(s) 387, 421
BciT130I CCWGG 3 cut(s) 534, 658, 730
BcnI CCSGG 1 cut(s) 558
BcoDI GTCTC 3 cut(s) 645, 1168, 1325
BfaI CTAG 3 cut(s) 512, 602, 725
BfmI CTRYAG 1 cut(s) 911
BfuAI ACCTGC 1 cut(s) 516
BglII AGATCT 1 cut(s) 1240
BisI GCNGC 3 cut(s) 433, 1025, 1530
BlsI GCNGC 3 cut(s) 434, 1026, 1531
Bme1390I CCNGG 4 cut(s) 534, 558, 658, 730
Bme18I GGWCC 3 cut(s) 551, 1117, 1134
BmgT120I GGNCC 5 cut(s) 171, 401, 551, 1117, 1134
BmiI GGNNCC 7 cut(s) 172, 199, 662, 1093, 1119, 1460, 1533
BmrFI CCNGG 4 cut(s) 534, 558, 658, 730
BmsI GCATC 3 cut(s) 376, 519, 1360
BpiI GAAGAC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 558
Bsa29I ATCGAT 1 cut(s) 1385
BsaJI CCNNGG 2 cut(s) 182, 729
BsaWI WCCGGW 2 cut(s) 548, 1136
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 563
Bse1I ACTGG 2 cut(s) 774, 1360
BseAI TCCGGA 2 cut(s) 548, 1136
BseBI CCWGG 3 cut(s) 534, 658, 730
BseCI ATCGAT 1 cut(s) 1385
BseDI CCNNGG 2 cut(s) 182, 729
BseGI GGATG 3 cut(s) 236, 688, 1268
BseLI CCNNNNNNNGG 2 cut(s) 533, 563
BseMII CTCAG 4 cut(s) 82, 596, 786, 1320
BseNI ACTGG 2 cut(s) 774, 1360
BseRI GAGGAG 3 cut(s) 177, 407, 467
BseYI CCCAGC 2 cut(s) 496, 1232
Bsh1236I CGCG 1 cut(s) 1529
BshFI GGCC 5 cut(s) 5, 173, 181, 403, 656
BshNI GGYRCC 3 cut(s) 1091, 1458, 1531
BshVI ATCGAT 1 cut(s) 1385
BsiHKAI GWGCWC 2 cut(s) 90, 459
BsiSI CCGG 3 cut(s) 549, 558, 1137
BslI CCNNNNNNNGG 2 cut(s) 533, 563
BsmAI GTCTC 3 cut(s) 645, 1168, 1325
BsmBI CGTCTC 1 cut(s) 645
BsnI GGCC 5 cut(s) 5, 173, 181, 403, 656
Bsp1286I GDGCHC 3 cut(s) 55, 90, 459
Bsp13I TCCGGA 2 cut(s) 548, 1136
Bsp143I GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
BspACI CCGC 3 cut(s) 432, 1024, 1529
BspANI GGCC 5 cut(s) 5, 173, 181, 403, 656
BspCNI CTCAG 4 cut(s) 81, 595, 787, 1321
BspDI ATCGAT 1 cut(s) 1385
BspEI TCCGGA 2 cut(s) 548, 1136
BspFNI CGCG 1 cut(s) 1529
BspLI GGNNCC 7 cut(s) 172, 199, 662, 1093, 1119, 1460, 1533
BspMI ACCTGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 1223
BspT107I GGYRCC 3 cut(s) 1091, 1458, 1531
BsrI ACTGG 2 cut(s) 774, 1360
BssECI CCNNGG 2 cut(s) 182, 729
BssMI GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
BssSI CACGAG 1 cut(s) 1416
Bst2BI CACGAG 1 cut(s) 1416
Bst2UI CCWGG 3 cut(s) 534, 658, 730
Bst4CI ACNGT 2 cut(s) 1134, 1505
BstC8I GCNNGC 4 cut(s) 276, 348, 376, 1413
BstDEI CTNAG 6 cut(s) 68, 582, 795, 993, 1314, 1329
BstF5I GGATG 3 cut(s) 236, 688, 1268
BstFNI CGCG 1 cut(s) 1529
BstHHI GCGC 1 cut(s) 844
BstKTI GATC 5 cut(s) 715, 1111, 1231, 1243, 1288
BstMAI GTCTC 3 cut(s) 645, 1168, 1325
BstMBI GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 395, 517, 653, 926, 1033, 1289
BstNI CCWGG 3 cut(s) 534, 658, 730
BstSCI CCNGG 4 cut(s) 532, 556, 656, 728
BstSFI CTRYAG 1 cut(s) 911
BstUI CGCG 1 cut(s) 1529
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 1228, 1240
BstXI CCANNNNNNTGG 1 cut(s) 1469
BstYI RGATCY 2 cut(s) 1228, 1240
Bsu15I ATCGAT 1 cut(s) 1385
BsuRI GGCC 5 cut(s) 5, 173, 181, 403, 656
BsuTUI ATCGAT 1 cut(s) 1385
BtsCI GGATG 3 cut(s) 236, 688, 1268
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 5 cut(s) 269, 427, 767, 1282, 1501
BveI ACCTGC 1 cut(s) 516
Cac8I GCNNGC 4 cut(s) 276, 348, 376, 1413
CfoI GCGC 1 cut(s) 844
Cfr13I GGNCC 5 cut(s) 171, 401, 551, 1117, 1134
ClaI ATCGAT 1 cut(s) 1385
CpoI CGGWCCG 1 cut(s) 1134
CseI GACGC 1 cut(s) 636
Csp6I GTAC 2 cut(s) 249, 1459
CspI CGGWCCG 1 cut(s) 1134
CviAII CATG 2 cut(s) 1011, 1519
CviQI GTAC 2 cut(s) 249, 1459
DdeI CTNAG 6 cut(s) 68, 582, 795, 993, 1314, 1329
DpnI GATC 5 cut(s) 714, 1110, 1230, 1242, 1287
DpnII GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
DraI TTTAAA 1 cut(s) 945
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 2 cut(s) 88, 457
Eco24I GRGCYC 3 cut(s) 55, 90, 459
Eco47I GGWCC 3 cut(s) 551, 1117, 1134
Eco53kI GAGCTC 2 cut(s) 88, 457
Eco57I CTGAAG 2 cut(s) 867, 1258
EcoICRI GAGCTC 2 cut(s) 88, 457
EcoRII CCWGG 3 cut(s) 532, 656, 728
EcoT38I GRGCYC 3 cut(s) 55, 90, 459
Esp3I CGTCTC 1 cut(s) 645
FaeI CATG 2 cut(s) 1014, 1522
FatI CATG 2 cut(s) 1010, 1518
Fnu4HI GCNGC 3 cut(s) 433, 1025, 1530
FokI GGATG 3 cut(s) 223, 675, 1275
FriOI GRGCYC 3 cut(s) 55, 90, 459
Fsp4HI GCNGC 3 cut(s) 433, 1025, 1530
FspBI CTAG 3 cut(s) 512, 602, 725
GlaI GCGC 1 cut(s) 843
GluI GCNGC 3 cut(s) 433, 1025, 1530
GsaI CCCAGC 2 cut(s) 500, 1236
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 5 cut(s) 5, 173, 181, 403, 656
HapII CCGG 3 cut(s) 549, 558, 1137
HgaI GACGC 1 cut(s) 636
HhaI GCGC 1 cut(s) 844
Hin1II CATG 2 cut(s) 1014, 1522
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 1316
HinfI GANTC 5 cut(s) 338, 957, 980, 1489, 1515
HpaII CCGG 3 cut(s) 549, 558, 1137
HphI GGTGA 2 cut(s) 334, 457
Hpy166II GTNNAC 5 cut(s) 77, 811, 979, 1151, 1499
Hpy188I TCNGA 3 cut(s) 343, 366, 1369
Hpy188III TCNNGA 8 cut(s) 91, 356, 549, 787, 971, 1137, 1198, 1444
Hpy8I GTNNAC 5 cut(s) 77, 811, 979, 1151, 1499
Hpy99I CGWCG 2 cut(s) 11, 224
HpyAV CCTTC 7 cut(s) 130, 621, 695, 947, 948, 998, 1134
HpyCH4III ACNGT 2 cut(s) 1134, 1505
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 6 cut(s) 274, 389, 965, 1211, 1256, 1373
HpyF10VI GCNNNNNNNGC 6 cut(s) 395, 517, 653, 926, 1033, 1289
HpyF3I CTNAG 6 cut(s) 68, 582, 795, 993, 1314, 1329
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 1014, 1522
HspAI GCGC 1 cut(s) 842
Kpn2I TCCGGA 2 cut(s) 548, 1136
KpnI GGTACC 1 cut(s) 1462
Kzo9I GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
LmnI GCTCC 6 cut(s) 203, 343, 454, 500, 752, 1280
LweI GCATC 3 cut(s) 376, 519, 1360
MaeI CTAG 3 cut(s) 512, 602, 725
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 5 cut(s) 267, 281, 422, 648, 1128
MalI GATC 5 cut(s) 714, 1110, 1230, 1242, 1287
MboI GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
MflI RGATCY 2 cut(s) 1228, 1240
MhlI GDGCHC 3 cut(s) 55, 90, 459
MluCI AATT 7 cut(s) 290, 575, 966, 1086, 1343, 1449, 1465
MlyI GAGTC 2 cut(s) 974, 1483
MmeI TCCRAC 2 cut(s) 344, 730
MroI TCCGGA 2 cut(s) 548, 1136
MroXI GAANNNNTTC 1 cut(s) 921
MseI TTAA 3 cut(s) 189, 944, 1509
MslI CAYNNNNRTG 2 cut(s) 872, 1261
MspA1I CMGCKG 1 cut(s) 1024
MspI CCGG 3 cut(s) 549, 558, 1137
MspR9I CCNGG 4 cut(s) 534, 558, 658, 730
MvaI CCWGG 3 cut(s) 534, 658, 730
MvnI CGCG 1 cut(s) 1529
MwoI GCNNNNNNNGC 6 cut(s) 395, 517, 653, 926, 1033, 1289
NciI CCSGG 1 cut(s) 558
NdeII GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
NlaIII CATG 2 cut(s) 1014, 1522
NlaIV GGNNCC 7 cut(s) 172, 199, 662, 1093, 1119, 1460, 1533
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 3 cut(s) 267, 422, 648
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 338, 957, 1515
PkrI GCNGC 3 cut(s) 434, 1026, 1531
PleI GAGTC 2 cut(s) 974, 1483
PpsI GAGTC 2 cut(s) 974, 1483
PshBI ATTAAT 1 cut(s) 189
PsiI TTATAA 1 cut(s) 1085
Psp124BI GAGCTC 2 cut(s) 90, 459
Psp6I CCWGG 3 cut(s) 532, 656, 728
PspFI CCCAGC 2 cut(s) 496, 1232
PspGI CCWGG 3 cut(s) 532, 656, 728
PspN4I GGNNCC 7 cut(s) 172, 199, 662, 1093, 1119, 1460, 1533
PspPI GGNCC 5 cut(s) 171, 401, 551, 1117, 1134
PsrI GAACNNNNNNTAC 2 cut(s) 591, 623
PsuI RGATCY 2 cut(s) 1228, 1240
RsaI GTAC 2 cut(s) 250, 1460
RsaNI GTAC 2 cut(s) 249, 1459
RseI CAYNNNNRTG 2 cut(s) 872, 1261
Rsr2I CGGWCCG 1 cut(s) 1134
RsrII CGGWCCG 1 cut(s) 1134
SacI GAGCTC 2 cut(s) 90, 459
SaqAI TTAA 3 cut(s) 189, 944, 1509
SatI GCNGC 3 cut(s) 433, 1025, 1530
Sau3AI GATC 5 cut(s) 712, 1108, 1228, 1240, 1285
Sau96I GGNCC 5 cut(s) 171, 401, 551, 1117, 1134
SchI GAGTC 2 cut(s) 974, 1483
ScrFI CCNGG 4 cut(s) 534, 558, 658, 730
SduI GDGCHC 3 cut(s) 55, 90, 459
SfaNI GCATC 3 cut(s) 376, 519, 1360
SfcI CTRYAG 1 cut(s) 911
SinI GGWCC 3 cut(s) 551, 1117, 1134
SmiMI CAYNNNNRTG 2 cut(s) 872, 1261
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 7 cut(s) 290, 575, 966, 1086, 1343, 1449, 1465
SsiI CCGC 3 cut(s) 432, 1024, 1529
SspI AATATT 2 cut(s) 540, 1399
SspMI CTAG 3 cut(s) 512, 602, 725
SstI GAGCTC 2 cut(s) 90, 459
StyD4I CCNGG 4 cut(s) 532, 556, 656, 728
TaaI ACNGT 2 cut(s) 1134, 1505
TaiI ACGT 1 cut(s) 82
TaqI TCGA 3 cut(s) 336, 1385, 1443
TasI AATT 7 cut(s) 290, 575, 966, 1086, 1343, 1449, 1465
TatI WGTACW 1 cut(s) 248
TauI GCSGC 3 cut(s) 435, 1027, 1532
TfiI GAWTC 3 cut(s) 338, 957, 1515
Tru1I TTAA 3 cut(s) 189, 944, 1509
Tru9I TTAA 3 cut(s) 189, 944, 1509
TscAI CASTG 5 cut(s) 276, 427, 774, 1282, 1508
TseFI GTSAC 3 cut(s) 267, 422, 648
Tsp45I GTSAC 3 cut(s) 267, 422, 648
TspDTI ATGAA 6 cut(s) 149, 612, 707, 869, 890, 1507
TspGWI ACGGA 2 cut(s) 24, 229
TspRI CASTG 5 cut(s) 276, 427, 774, 1282, 1508
VpaK11BI GGWCC 3 cut(s) 551, 1117, 1134
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 3 cut(s) 1343, 1449, 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 3 cut(s) 512, 602, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.