Rroxscaffold_5G00362480

Belongs to the adaptor complexes medium subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007388
Physical Location & Seq
Forward (+)
43474641 .. 43479443
4803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362480.1

Sequence Viewer

Length: 1998 bp
ATGCCCCAAGGTAGTAGCATCAGAGCCATCTGGATCCTCAACAGCCTCGACGCCGTCGTATTCTCCAGGAGGTTTCCGGTGGTGGAGAAGCGGTGGCGGGGAGCTTGCAAGGAGAGCTCTACTGATGGCGGTCTCAATGACACTGTGTTTCCTTTACTTCCTAGTGATTCCGAGTTAGCTGCTGCATTTGTGGACAGAAAGAGAAGAGAGGGCTCTATTCGTGGGTGTGGAATACGTGTAAGTCAGTCAGCTAAAGGCTCAGATTCTTGGGTTGATGATCCAATTACCCGTCATATAATTGGAATTTACATAGGCAAAGAAAAGGAAGGGGATGGCAATAATGATAAAAATAATTTGCTGTGGCCTTTAGTCTTGCACACAAAGGGCCATTTTTGCATCCTGATATTGCCTTTAGTGGAGCCGAGGCATTTGAAGGCATATGCAAGATTATGTAATAGATCTGATTGTGGCAATGCTGTTGGTGTGGAGGACAGTATATCTTCCATTCTGCTCGATCTTCCATCCATCACAGGGGCATTTATGGCAGCACATGCAATTGGTGACATAATAACTTGCGACGTCGTGGAACCTGAGGTAGTTGTCAATGCATCTCCATCTGTTGGAGGTTTATTGGATTCGCTAACTGGCAGCATAGGAATATCGAGCATTTCCTCAAGGGCAAAACCTATTGCTGCACCAGTTGCATCCTCGAGCCCTACTAGCAGTGCTGTGACTGGAACTGTGACATCAGATGCTAACAAGACTGGCTCTAGGCCTTTAGATAAAGATGCACTTCGAACTTTCATAAGCAGTTCAATGCCCTTTGGAACGCTGTTGGATTTGAGCTTCCCCAATATCATTTCCATTAAGGTTAATGGTTTTTCATCATCAGATCTTCCTCCTTCAGACCTGAAGCAACCAGCATGGAAGCCTTACCTATACAAAGGAAGGCAGAGAATTCTATTTTCTATTCATGAGACTGTCCATGCTGCTATGTACGACCGAGATGAGATTCCAGATAGTATATTAATTTCTGGACAAATAAATTGCCGAGCAGAGTTAGAAGGATTGCCTGATGTGTCCTTCCCCTTGATAGGACTGAACTCAGATAAGATTGAAGTTTTATCATTTCATCCTTGTGCTCAAGTTCCAGAACAAGGTGTTGATAAGCAGGTTGTGATGTTTTCACCACCATTAGGTAATTTTACTTTAATGCGTTACCAAGCAGTCTGTGGTATTGGACCACCCATTAAGGGATTTTACCAATTGTCTATGGTATCTGAGGATAAAGGTGATTTTTTATTCAAATTACGGCTAATGGATGGTTACAAGTCTCCTCTCACAATGGAGTTTTGTACTGTGACTATGCCTTTTCCAAGGAGACGGGTTGTATCTTTTGATGGGACTCCCTCGGTCGGAATAGTTTCAACTACCGAGCATTCTGTTGAATGGAAGATTATAATGGGCGGGCGGGGTCTTAGTGGGAAAAGTATCGAGGCAACTTTTCCTGGTAAAGTCCAGTTTGCACCATGGAAACCCCAAATATTACCTCCGTCTAGTTTGGCCTTTGGAAGCATAACTGATGAAGATAGTGATATTGAGACAGATGGTAATAATAATAGTATGGTCAATGTAGAGGAGTTCTTAATGGAGAAAATGAGCAAGGATCTTCATCCTGCCGATCTGGAGGAGCCATTTTGCTGGCATGCATACAACTATGCCAAGGTGTCCTTCAAAATTGTTGGAGCTTCATTGTCTGGAATGTCAATTGATCCGAAATCTGTAAGCATTTATCCAGCTGTGAAAGCACCAGTGGAGTCCTCTACTCAGGGGAAGGATATTGATGGCAGCTCAGAAATGTCAAATGTGAATTTGCGATCAGGGGAAGGCATTTATTTGTCTGACATGCGGACTACCTCCTTATTATCTCCTGTTAAAAGTCTGATGCATACTAGGAGGTACAGATTCTTTGCTATTTATGAGCCGGCCTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Adap_comp_sub

Protein Analysis

665

Amino Acids

72.36

Weight (kDa)

5.91

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 308 - 606 1.6e-30 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1460
AatII GACGTC 1 cut(s) 582
Acc36I ACCTGC 1 cut(s) 1162
AccB7I CCANNNNNTGG 1 cut(s) 620
AciI CCGC 6 cut(s) 91, 97, 129, 1467, 1471, 1909
AclWI GGATC 5 cut(s) 28, 41, 272, 1674, 1766
AcsI RAATTY 3 cut(s) 303, 957, 1870
AcuI CTGAAG 2 cut(s) 888, 932
AcyI GRCGYC 2 cut(s) 51, 579
AfaI GTAC 3 cut(s) 998, 1357, 1961
AfiI CCNNNNNNNGG 7 cut(s) 531, 620, 1094, 1157, 1196, 1253, 1415
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 7 cut(s) 433, 816, 1118, 1306, 1428, 1448, 1735
AjnI CCWGG 2 cut(s) 65, 1507
AjuI GAANNNNNNNTTGG 2 cut(s) 1715, 1747
AluBI AGCT 8 cut(s) 104, 117, 179, 251, 846, 1748, 1799, 1851
AluI AGCT 8 cut(s) 104, 117, 179, 251, 846, 1748, 1799, 1851
Alw21I GWGCWC 2 cut(s) 119, 1144
Alw26I GTCTC 5 cut(s) 137, 971, 1338, 1375, 1595
AlwI GGATC 5 cut(s) 28, 41, 272, 1674, 1766
Ama87I CYCGRG 1 cut(s) 709
AoxI GGCC 5 cut(s) 362, 385, 773, 1563, 1986
ApeKI GCWGC 7 cut(s) 179, 182, 545, 648, 692, 989, 1848
ApoI RAATTY 3 cut(s) 303, 957, 1870
AseI ATTAAT 1 cut(s) 1028
Asp700I GAANNNNTTC 1 cut(s) 1423
AspS9I GGNCC 2 cut(s) 385, 1241
AsuHPI GGTGA 3 cut(s) 572, 1179, 1304
AsuII TTCGAA 1 cut(s) 796
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 1 cut(s) 1241
AxyI CCTNAGG 1 cut(s) 591
BamHI GGATCC 1 cut(s) 33
BanII GRGCYC 3 cut(s) 119, 215, 716
Bbv12I GWGCWC 2 cut(s) 119, 1144
BbvI GCAGC 7 cut(s) 166, 169, 557, 660, 679, 976, 1860
BceAI ACGGC 2 cut(s) 38, 1328
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 67, 1509
BcoDI GTCTC 5 cut(s) 137, 971, 1338, 1375, 1595
BfaI CTAG 5 cut(s) 162, 720, 771, 1557, 1953
BfuAI ACCTGC 1 cut(s) 1162
BglII AGATCT 2 cut(s) 458, 892
BisI GCNGC 7 cut(s) 180, 183, 546, 649, 693, 990, 1849
BlsI GCNGC 7 cut(s) 181, 184, 547, 650, 694, 991, 1850
Bme1390I CCNGG 2 cut(s) 67, 1509
Bme18I GGWCC 1 cut(s) 1241
BmeT110I CYCGRG 1 cut(s) 709
BmgT120I GGNCC 2 cut(s) 385, 1241
BmiI GGNNCC 4 cut(s) 35, 420, 588, 1692
BmrFI CCNGG 2 cut(s) 67, 1509
BmsI GCATC 7 cut(s) 27, 405, 617, 713, 742, 778, 1935
BplI GAGNNNNNCTC 1 cut(s) 1973
BpmI CTGGAG 2 cut(s) 49, 1706
Bpu14I TTCGAA 1 cut(s) 796
BpuEI CTTGAG 2 cut(s) 658, 1128
BsaAI YACGTR 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 1671
BsaHI GRCGYC 2 cut(s) 51, 579
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 6 cut(s) 7, 422, 1376, 1410, 1529, 1722
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 7 cut(s) 531, 620, 1094, 1157, 1196, 1253, 1415
Bse118I RCCGGY 1 cut(s) 1984
Bse1I ACTGG 6 cut(s) 649, 698, 739, 769, 1519, 1811
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 478
Bse8I GATNNNNATC 1 cut(s) 1671
BseBI CCWGG 2 cut(s) 67, 1509
BseDI CCNNGG 6 cut(s) 7, 422, 1376, 1410, 1529, 1722
BseGI GGATG 7 cut(s) 337, 396, 521, 704, 1132, 1327, 1672
BseJI GATNNNNATC 1 cut(s) 1671
BseLI CCNNNNNNNGG 7 cut(s) 531, 620, 1094, 1157, 1196, 1253, 1415
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 6 cut(s) 273, 582, 1119, 1272, 1841, 1866
BseNI ACTGG 6 cut(s) 649, 698, 739, 769, 1519, 1811
BseRI GAGGAG 3 cut(s) 1326, 1652, 1703
BseXI GCAGC 7 cut(s) 166, 169, 557, 660, 679, 976, 1860
BsgI GTGCAG 1 cut(s) 678
Bsh1285I CGRYCG 2 cut(s) 1003, 1416
BshFI GGCC 5 cut(s) 364, 387, 775, 1565, 1988
BsiEI CGRYCG 2 cut(s) 1003, 1416
BsiHKAI GWGCWC 2 cut(s) 119, 1144
BsiHKCI CYCGRG 1 cut(s) 709
BsiSI CCGG 2 cut(s) 77, 1985
BslFI GGGAC 1 cut(s) 1417
BslI CCNNNNNNNGG 7 cut(s) 531, 620, 1094, 1157, 1196, 1253, 1415
BsmAI GTCTC 5 cut(s) 137, 971, 1338, 1375, 1595
BsmBI CGTCTC 1 cut(s) 1375
BsmFI GGGAC 1 cut(s) 1417
BsmI GAATGC 1 cut(s) 1438
BsnI GGCC 5 cut(s) 364, 387, 775, 1565, 1988
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 709
Bsp119I TTCGAA 1 cut(s) 796
Bsp1286I GDGCHC 4 cut(s) 119, 215, 716, 1144
Bsp143I GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
Bsp19I CCATGG 1 cut(s) 1529
BspACI CCGC 6 cut(s) 91, 97, 129, 1467, 1471, 1909
BspANI GGCC 5 cut(s) 364, 387, 775, 1565, 1988
BspCNI CTCAG 6 cut(s) 272, 583, 1118, 1273, 1840, 1865
BspHI TCATGA 1 cut(s) 973
BspLI GGNNCC 4 cut(s) 35, 420, 588, 1692
BspMI ACCTGC 1 cut(s) 1162
BspPI GGATC 5 cut(s) 28, 41, 272, 1674, 1766
BspT104I TTCGAA 1 cut(s) 796
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 1984
BsrI ACTGG 6 cut(s) 649, 698, 739, 769, 1519, 1811
BssAI RCCGGY 1 cut(s) 1984
BssECI CCNNGG 6 cut(s) 7, 422, 1376, 1410, 1529, 1722
BssMI GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
BssNI GRCGYC 2 cut(s) 51, 579
BssT1I CCWWGG 4 cut(s) 7, 1376, 1529, 1722
Bst2UI CCWGG 2 cut(s) 67, 1509
Bst4CI ACNGT 5 cut(s) 145, 494, 742, 982, 1360
Bst6I CTCTTC 1 cut(s) 199
BstACI GRCGYC 2 cut(s) 51, 579
BstAPI GCANNNNNTGC 2 cut(s) 551, 701
BstBAI YACGTR 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 796
BstC8I GCNNGC 5 cut(s) 106, 1469, 1703, 1707, 1986
BstDEI CTNAG 8 cut(s) 259, 591, 1105, 1281, 1478, 1827, 1852, 1990
BstDSI CCRYGG 1 cut(s) 1529
BstF5I GGATG 7 cut(s) 337, 396, 521, 704, 1132, 1327, 1672
BstKTI GATC 9 cut(s) 36, 280, 461, 517, 895, 1669, 1684, 1774, 1880
BstMAI GTCTC 5 cut(s) 137, 971, 1338, 1375, 1595
BstMBI GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
BstMCI CGRYCG 2 cut(s) 1003, 1416
BstMWI GCNNNNNNNGC 7 cut(s) 114, 393, 542, 551, 701, 720, 1805
BstNI CCWGG 2 cut(s) 67, 1509
BstNSI RCATGY 3 cut(s) 554, 1709, 1909
BstSCI CCNGG 2 cut(s) 65, 1507
BstV1I GCAGC 7 cut(s) 166, 169, 557, 660, 679, 976, 1860
BstX2I RGATCY 4 cut(s) 33, 458, 892, 1666
BstXI CCANNNNNNTGG 1 cut(s) 1701
BstYI RGATCY 4 cut(s) 33, 458, 892, 1666
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 5 cut(s) 364, 387, 775, 1565, 1988
BtgI CCRYGG 1 cut(s) 1529
BtsCI GGATG 7 cut(s) 337, 396, 521, 704, 1132, 1327, 1672
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 3 cut(s) 141, 730, 1818
BveI ACCTGC 1 cut(s) 1162
Cac8I GCNNGC 5 cut(s) 106, 1469, 1703, 1707, 1986
CciI TCATGA 1 cut(s) 973
Cfr10I RCCGGY 1 cut(s) 1984
Cfr13I GGNCC 2 cut(s) 385, 1241
CseI GACGC 1 cut(s) 59
Csp6I GTAC 3 cut(s) 997, 1356, 1960
CviAII CATG 7 cut(s) 551, 924, 974, 986, 1530, 1706, 1906
CviQI GTAC 3 cut(s) 997, 1356, 1960
DdeI CTNAG 8 cut(s) 259, 591, 1105, 1281, 1478, 1827, 1852, 1990
DpnI GATC 9 cut(s) 35, 279, 460, 516, 894, 1668, 1683, 1773, 1879
DpnII GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 4 cut(s) 7, 1376, 1529, 1722
Eco147I AGGCCT 1 cut(s) 775
Eco24I GRGCYC 3 cut(s) 119, 215, 716
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 1241
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 888, 932
Eco81I CCTNAGG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 957
EcoRII CCWGG 2 cut(s) 65, 1507
EcoT14I CCWWGG 4 cut(s) 7, 1376, 1529, 1722
EcoT22I ATGCAT 3 cut(s) 610, 1711, 1950
EcoT38I GRGCYC 3 cut(s) 119, 215, 716
ErhI CCWWGG 4 cut(s) 7, 1376, 1529, 1722
Esp3I CGTCTC 1 cut(s) 1375
FaeI CATG 7 cut(s) 554, 927, 977, 989, 1533, 1709, 1909
FalI AAGNNNNNCTT 4 cut(s) 777, 809, 1715, 1747
FaqI GGGAC 1 cut(s) 1417
FatI CATG 7 cut(s) 550, 923, 973, 985, 1529, 1705, 1905
FauI CCCGC 3 cut(s) 90, 1460, 1464
FauNDI CATATG 1 cut(s) 439
Fnu4HI GCNGC 7 cut(s) 180, 183, 546, 649, 693, 990, 1849
FokI GGATG 7 cut(s) 344, 383, 508, 691, 1119, 1334, 1659
FriOI GRGCYC 3 cut(s) 119, 215, 716
Fsp4HI GCNGC 7 cut(s) 180, 183, 546, 649, 693, 990, 1849
FspBI CTAG 5 cut(s) 162, 720, 771, 1557, 1953
GluI GCNGC 7 cut(s) 180, 183, 546, 649, 693, 990, 1849
GsuI CTGGAG 2 cut(s) 49, 1706
HaeIII GGCC 5 cut(s) 364, 387, 775, 1565, 1988
HapII CCGG 2 cut(s) 77, 1985
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 2 cut(s) 51, 579
Hin1II CATG 7 cut(s) 554, 927, 977, 989, 1533, 1709, 1909
HinfI GANTC 7 cut(s) 167, 263, 635, 1012, 1405, 1817, 1965
HpaII CCGG 2 cut(s) 77, 1985
HphI GGTGA 3 cut(s) 572, 1179, 1304
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 8 cut(s) 31, 400, 974, 1016, 1035, 1151, 1685, 1758
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 4 cut(s) 53, 59, 581, 584
HpyAV CCTTC 9 cut(s) 320, 427, 912, 942, 1058, 1093, 1741, 1828, 1880
HpyCH4III ACNGT 5 cut(s) 145, 494, 742, 982, 1360
HpyCH4IV ACGT 2 cut(s) 235, 579
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 393, 542, 551, 701, 720, 1805
HpyF3I CTNAG 8 cut(s) 259, 591, 1105, 1281, 1478, 1827, 1852, 1990
HpySE526I ACGT 2 cut(s) 235, 579
Hsp92I GRCGYC 2 cut(s) 51, 579
Hsp92II CATG 7 cut(s) 554, 927, 977, 989, 1533, 1709, 1909
KroI GCCGGC 1 cut(s) 1984
KroNI GCCGGC 1 cut(s) 1986
Kzo9I GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
LmnI GCTCC 4 cut(s) 101, 418, 1690, 1745
Lsp1109I GCAGC 7 cut(s) 166, 169, 557, 660, 679, 976, 1860
LweI GCATC 7 cut(s) 27, 405, 617, 713, 742, 778, 1935
MaeI CTAG 5 cut(s) 162, 720, 771, 1557, 1953
MaeII ACGT 2 cut(s) 235, 579
MaeIII GTNAC 6 cut(s) 560, 730, 742, 1217, 1325, 1360
MalI GATC 9 cut(s) 35, 279, 460, 516, 894, 1668, 1683, 1773, 1879
MboI GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
MboII GAAGA 7 cut(s) 216, 492, 509, 887, 1465, 1598, 1661
MfeI CAATTG 3 cut(s) 555, 1265, 1767
MflI RGATCY 4 cut(s) 33, 458, 892, 1666
MhlI GDGCHC 4 cut(s) 119, 215, 716, 1144
MlyI GAGTC 2 cut(s) 1399, 1826
MmeI TCCRAC 4 cut(s) 601, 816, 1396, 1723
Mph1103I ATGCAT 3 cut(s) 610, 1711, 1950
MroNI GCCGGC 1 cut(s) 1984
MroXI GAANNNNTTC 1 cut(s) 1423
MseI TTAA 7 cut(s) 867, 873, 1028, 1211, 1251, 1646, 1935
MslI CAYNNNNRTG 1 cut(s) 1137
MspA1I CMGCKG 1 cut(s) 1799
MspI CCGG 2 cut(s) 77, 1985
MspR9I CCNGG 2 cut(s) 67, 1509
MunI CAATTG 3 cut(s) 555, 1265, 1767
Mva1269I GAATGC 1 cut(s) 1438
MvaI CCWGG 2 cut(s) 67, 1509
MwoI GCNNNNNNNGC 7 cut(s) 114, 393, 542, 551, 701, 720, 1805
NaeI GCCGGC 1 cut(s) 1986
NcoI CCATGG 1 cut(s) 1529
NdeI CATATG 1 cut(s) 439
NdeII GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
NgoMIV GCCGGC 1 cut(s) 1984
NlaIII CATG 7 cut(s) 554, 927, 977, 989, 1533, 1709, 1909
NlaIV GGNNCC 4 cut(s) 35, 420, 588, 1692
NmeAIII GCCGAG 2 cut(s) 447, 1076
NmuCI GTSAC 4 cut(s) 560, 730, 742, 1360
NsiI ATGCAT 3 cut(s) 610, 1711, 1950
NspI RCATGY 3 cut(s) 554, 1709, 1909
NspV TTCGAA 1 cut(s) 796
PaeI GCATGC 1 cut(s) 1709
PaeR7I CTCGAG 1 cut(s) 709
PagI TCATGA 1 cut(s) 973
PceI AGGCCT 1 cut(s) 775
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 1438
PdiI GCCGGC 1 cut(s) 1986
PdmI GAANNNNTTC 1 cut(s) 1423
PfeI GAWTC 5 cut(s) 167, 263, 635, 1012, 1965
PflFI GACNNNGTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 65
PkrI GCNGC 7 cut(s) 181, 184, 547, 650, 694, 991, 1850
PleI GAGTC 2 cut(s) 1399, 1825
PpsI GAGTC 2 cut(s) 1399, 1825
Ppu21I YACGTR 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 1028
PsiI TTATAA 1 cut(s) 1460
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 65, 1507
PspGI CCWGG 2 cut(s) 65, 1507
PspN4I GGNNCC 4 cut(s) 35, 420, 588, 1692
PspPI GGNCC 2 cut(s) 385, 1241
PspXI VCTCGAGB 1 cut(s) 709
PsuI RGATCY 4 cut(s) 33, 458, 892, 1666
PsyI GACNNNGTC 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 1799
RsaI GTAC 3 cut(s) 998, 1357, 1961
RsaNI GTAC 3 cut(s) 997, 1356, 1960
RseI CAYNNNNRTG 1 cut(s) 1137
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 7 cut(s) 867, 873, 1028, 1211, 1251, 1646, 1935
SatI GCNGC 7 cut(s) 180, 183, 546, 649, 693, 990, 1849
Sau3AI GATC 9 cut(s) 33, 277, 458, 514, 892, 1666, 1681, 1771, 1877
Sau96I GGNCC 2 cut(s) 385, 1241
SchI GAGTC 2 cut(s) 1399, 1826
ScrFI CCNGG 2 cut(s) 67, 1509
SduI GDGCHC 4 cut(s) 119, 215, 716, 1144
SfaNI GCATC 7 cut(s) 27, 405, 617, 713, 742, 778, 1935
Sfr274I CTCGAG 1 cut(s) 709
SfuI TTCGAA 1 cut(s) 796
SinI GGWCC 1 cut(s) 1241
SlaI CTCGAG 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 1137
SmlI CTYRAG 3 cut(s) 673, 709, 1143
SmoI CTYRAG 3 cut(s) 673, 709, 1143
SphI GCATGC 1 cut(s) 1709
SseBI AGGCCT 1 cut(s) 775
SsiI CCGC 6 cut(s) 91, 97, 129, 1467, 1471, 1909
SspI AATATT 1 cut(s) 1545
SspMI CTAG 5 cut(s) 162, 720, 771, 1557, 1953
SstI GAGCTC 1 cut(s) 119
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 2 cut(s) 65, 1507
StyI CCWWGG 4 cut(s) 7, 1376, 1529, 1722
TaaI ACNGT 5 cut(s) 145, 494, 742, 982, 1360
TaiI ACGT 2 cut(s) 238, 582
TaqI TCGA 6 cut(s) 48, 513, 662, 710, 796, 1494
TaqII GACCGA 2 cut(s) 1017, 1402
TatI WGTACW 1 cut(s) 1355
TfiI GAWTC 5 cut(s) 167, 263, 635, 1012, 1965
Tru1I TTAA 7 cut(s) 867, 873, 1028, 1211, 1251, 1646, 1935
Tru9I TTAA 7 cut(s) 867, 873, 1028, 1211, 1251, 1646, 1935
TscAI CASTG 3 cut(s) 148, 730, 1818
TseFI GTSAC 4 cut(s) 560, 730, 742, 1360
TseI GCWGC 7 cut(s) 179, 182, 545, 648, 692, 989, 1848
Tsp45I GTSAC 4 cut(s) 560, 730, 742, 1360
TspDTI ATGAA 7 cut(s) 793, 873, 962, 1121, 1599, 1661, 1740
TspGWI ACGGA 1 cut(s) 1542
TspRI CASTG 3 cut(s) 148, 730, 1818
Tth111I GACNNNGTC 1 cut(s) 53
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 1241
VspI ATTAAT 1 cut(s) 1028
XapI RAATTY 3 cut(s) 303, 957, 1870
XceI RCATGY 3 cut(s) 554, 1709, 1909
XcmI CCANNNNNNNNNTGG 1 cut(s) 1229
XhoI CTCGAG 1 cut(s) 709
XmnI GAANNNNTTC 1 cut(s) 1423
XspI CTAG 5 cut(s) 162, 720, 771, 1557, 1953
ZraI GACGTC 1 cut(s) 580
Zsp2I ATGCAT 3 cut(s) 610, 1711, 1950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.