Rw4G018990

Belongs to the adaptor complexes medium subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007388
Physical Location & Seq
Forward (+)
42058659 .. 42063456
4798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018990.1

Sequence Viewer

Length: 1599 bp
ATGCCGCCGATTAGTGATGAGATGGGTGCGGCTAAATCAATAGATGTAACAGCCTTTGGATCCCTCTCTCAGCCTTTGGATCCACATTATCCTTCCTCAAAAAAAGGAAAAAAAAAAAAAATCCAAAATCTAGAATTACTACTTGACGGTAAGTTTGTCTGCTCTCATGCTGTTGGTGTGGAGGACAATATATCTTCCATTCTGCTCGATCTTCCATCCATCACAGGGGCATTTATGGCGGCACATGCAATTGGTGACATAATAACTGGCGACGTTGTGGAACCTGAGGTAGTTGTCAATGCGTCTCCATCTGTTGGAGGTTTATTGGATTCACTAACTGGGAGCATAGGAATATCGAGCATTTCCTCAAGGGCAAAACCTATTGCTGCACCAGTTGCATCCTCGAGCCCTACTAGCAGTGCTGTGACTGGAACTGTGACATCAGATGCTAACAAGACTGGCTCTAGGCCTTTAGATAAAGATGCACTTCGAACTTTCATAAGCAGTTCAATGCCCTTTGGAACGCTGATGGATTTGAGCTTCCCCAATATCATTTCCATTAAGGCTAATGGTTTTTCGTCATCAGATCTTCCTCCTTCAGACCTGAAGCAACCAGCATGGAAGCCTTACCTATACAAAGGAAGGCAGAGAATTCTGTTTTCTATTCATGAGACTGTCCATGCTGCTATGTACGACCGAGATGAGATTCCAGATAGTATATTAATTTCTGGACATATAAATTGCCGAGCAGAGTTAGAAGGATTGCCTGATGTGTCCTTCCCCTTGATAGGACTGAACTCAAATAAGATTGAAGTTTTATCATTTCATCCTTGTGCTCAAGTTCCAGAACAAGGTGTTGATAAGCAGGCTGTGATGTTTTCACCACCATTAGGTAATTTTGCTTTAATGCGTTACCAAGCAGTCTGTGGTATTGGACCACCCATAAAGGGATTTTACCAATTGTCTATGGTATCTGAGGATAAAGGTGATTTTTTATTCAAATTGCGGCTAATGGATGGTTACAAGTCTCCTCTCACAATGGAGTTTTGTACTGTGACTATGCCTTTTCCAAGGAGACGGGTTGTATCTTTTGATGGGACTCCCTCGGTCGGAATAGTTTCAACTACAGAGCATTCTGTTGAATGGAAGATTATAATGGGCGGGCGGGGTCTTAGTGGGAAAAGTATCGAGGCAACTTTTCCTGGTAAAGTCCAGTTTGCACCATGGAAACCCCAAATATTACCTCCGTCTAGTTTGGCCTTTGGAATCATAACTGATGAAGATAGTGATATGGAGACGGATGGTAATAATAATAGTATGGTCAATGTAGAGGAGTTCTTAATGGAGAAAATGAGCAAGGATCTTCATCCTGCCGATCTGGAGGAGCCATTTTGCTGGCATGCATACAACTATGCCAAGGTGTCCTTCAAAATTGTTGGAGCTTCATTGTCTGGAATGTCAATTGATCCGAAATCTGTAAGCATTTATCCAGCTGTGAAAGCACCAGTGGAGTCCTCTACTCAGGTTACATCTGGGGATTACATATTGTGGAATACATTGGGTAGATGCCCATCTGCTGTAGCAGCTACAAAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Adap_comp_sub

Protein Analysis

532

Amino Acids

57.18

Weight (kDa)

5.55

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 206 - 505 1.9e-29 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1154
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 6 cut(s) 5, 29, 239, 1006, 1161, 1165
AclWI GGATC 6 cut(s) 54, 67, 74, 87, 1368, 1460
AcsI RAATTY 1 cut(s) 651
AcuI CTGAAG 2 cut(s) 582, 626
AfaI GTAC 2 cut(s) 692, 1051
AfiI CCNNNNNNNGG 7 cut(s) 225, 314, 788, 851, 890, 947, 1109
AgsI TTSAA 6 cut(s) 510, 812, 1000, 1122, 1142, 1429
AjnI CCWGG 1 cut(s) 1201
AjuI GAANNNNNNNTTGG 2 cut(s) 1409, 1441
AluBI AGCT 4 cut(s) 540, 1442, 1493, 1586
AluI AGCT 4 cut(s) 540, 1442, 1493, 1586
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 5 cut(s) 309, 665, 1032, 1069, 1289
AlwI GGATC 6 cut(s) 54, 67, 74, 87, 1368, 1460
Ama87I CYCGRG 1 cut(s) 403
AoxI GGCC 2 cut(s) 467, 1257
ApeKI GCWGC 3 cut(s) 386, 683, 1583
ApoI RAATTY 1 cut(s) 651
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AseI ATTAAT 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 1117
AspS9I GGNCC 1 cut(s) 935
AsuHPI GGTGA 3 cut(s) 266, 873, 998
AsuII TTCGAA 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 403
AvaII GGWCC 1 cut(s) 935
AxyI CCTNAGG 1 cut(s) 285
BamHI GGATCC 2 cut(s) 59, 79
BanII GRGCYC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 3 cut(s) 373, 670, 1595
BccI CCATC 9 cut(s) 16, 223, 227, 316, 523, 1010, 1088, 1295, 1579
BciT130I CCWGG 1 cut(s) 1203
BcoDI GTCTC 5 cut(s) 309, 665, 1032, 1069, 1289
BfaI CTAG 4 cut(s) 131, 414, 465, 1251
BfmI CTRYAG 2 cut(s) 1125, 1578
BglII AGATCT 1 cut(s) 586
BisI GCNGC 7 cut(s) 5, 30, 240, 387, 684, 1007, 1584
BlsI GCNGC 7 cut(s) 6, 31, 241, 388, 685, 1008, 1585
Bme1390I CCNGG 1 cut(s) 1203
Bme18I GGWCC 1 cut(s) 935
BmeT110I CYCGRG 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 935
BmiI GGNNCC 4 cut(s) 61, 81, 282, 1386
BmrFI CCNGG 1 cut(s) 1203
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 4 cut(s) 407, 436, 472, 1556
BmuI ACTGGG 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 1400
Bpu14I TTCGAA 1 cut(s) 490
BpuEI CTTGAG 2 cut(s) 352, 822
BsaBI GATNNNNATC 2 cut(s) 1365, 1570
BsaJI CCNNGG 4 cut(s) 1070, 1104, 1223, 1416
Bsc4I CCNNNNNNNGG 7 cut(s) 225, 314, 788, 851, 890, 947, 1109
Bse1I ACTGG 7 cut(s) 271, 343, 392, 433, 463, 1213, 1505
Bse21I CCTNAGG 1 cut(s) 285
Bse8I GATNNNNATC 2 cut(s) 1365, 1570
BseBI CCWGG 1 cut(s) 1203
BseDI CCNNGG 4 cut(s) 1070, 1104, 1223, 1416
BseGI GGATG 6 cut(s) 215, 398, 826, 1021, 1306, 1366
BseJI GATNNNNATC 2 cut(s) 1365, 1570
BseLI CCNNNNNNNGG 7 cut(s) 225, 314, 788, 851, 890, 947, 1109
BseMII CTCAG 4 cut(s) 83, 276, 966, 1535
BseNI ACTGG 7 cut(s) 271, 343, 392, 433, 463, 1213, 1505
BseRI GAGGAG 3 cut(s) 1020, 1346, 1397
BseXI GCAGC 3 cut(s) 373, 670, 1595
BsgI GTGCAG 1 cut(s) 372
Bsh1285I CGRYCG 2 cut(s) 697, 1110
BshFI GGCC 2 cut(s) 469, 1259
BsiEI CGRYCG 2 cut(s) 697, 1110
BsiHKAI GWGCWC 1 cut(s) 838
BsiHKCI CYCGRG 1 cut(s) 403
BslFI GGGAC 1 cut(s) 1111
BslI CCNNNNNNNGG 7 cut(s) 225, 314, 788, 851, 890, 947, 1109
BsmAI GTCTC 5 cut(s) 309, 665, 1032, 1069, 1289
BsmBI CGTCTC 3 cut(s) 309, 1069, 1289
BsmFI GGGAC 1 cut(s) 1111
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 2 cut(s) 469, 1259
BsoBI CYCGRG 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 410, 838
Bsp143I GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
Bsp19I CCATGG 1 cut(s) 1223
BspACI CCGC 6 cut(s) 5, 29, 239, 1006, 1161, 1165
BspANI GGCC 2 cut(s) 469, 1259
BspCNI CTCAG 4 cut(s) 82, 277, 967, 1534
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 4 cut(s) 61, 81, 282, 1386
BspPI GGATC 6 cut(s) 54, 67, 74, 87, 1368, 1460
BspT104I TTCGAA 1 cut(s) 490
BsrI ACTGG 7 cut(s) 271, 343, 392, 433, 463, 1213, 1505
BssECI CCNNGG 4 cut(s) 1070, 1104, 1223, 1416
BssMI GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
BssT1I CCWWGG 3 cut(s) 1070, 1223, 1416
Bst2UI CCWGG 1 cut(s) 1203
Bst4CI ACNGT 4 cut(s) 149, 436, 676, 1054
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 4 cut(s) 867, 1163, 1397, 1401
BstDEI CTNAG 5 cut(s) 69, 285, 975, 1172, 1521
BstDSI CCRYGG 1 cut(s) 1223
BstF5I GGATG 6 cut(s) 215, 398, 826, 1021, 1306, 1366
BstKTI GATC 7 cut(s) 62, 82, 211, 589, 1363, 1378, 1468
BstMAI GTCTC 5 cut(s) 309, 665, 1032, 1069, 1289
BstMBI GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
BstMCI CGRYCG 2 cut(s) 697, 1110
BstMWI GCNNNNNNNGC 6 cut(s) 236, 245, 395, 414, 1499, 1583
BstNI CCWGG 1 cut(s) 1203
BstNSI RCATGY 2 cut(s) 248, 1403
BstSCI CCNGG 1 cut(s) 1201
BstSFI CTRYAG 2 cut(s) 1125, 1578
BstV1I GCAGC 3 cut(s) 373, 670, 1595
BstX2I RGATCY 4 cut(s) 59, 79, 586, 1360
BstXI CCANNNNNNTGG 1 cut(s) 1395
BstYI RGATCY 4 cut(s) 59, 79, 586, 1360
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 469, 1259
BtgI CCRYGG 1 cut(s) 1223
BtsCI GGATG 6 cut(s) 215, 398, 826, 1021, 1306, 1366
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 424, 1512
Cac8I GCNNGC 4 cut(s) 867, 1163, 1397, 1401
CciI TCATGA 1 cut(s) 667
Cfr13I GGNCC 1 cut(s) 935
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 691, 1050
CviAII CATG 7 cut(s) 167, 245, 618, 668, 680, 1224, 1400
CviQI GTAC 2 cut(s) 691, 1050
DdeI CTNAG 5 cut(s) 69, 285, 975, 1172, 1521
DpnI GATC 7 cut(s) 61, 81, 210, 588, 1362, 1377, 1467
DpnII GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
Eco130I CCWWGG 3 cut(s) 1070, 1223, 1416
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 935
Eco57I CTGAAG 2 cut(s) 582, 626
Eco81I CCTNAGG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 1201
EcoT14I CCWWGG 3 cut(s) 1070, 1223, 1416
EcoT22I ATGCAT 1 cut(s) 1405
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 3 cut(s) 1070, 1223, 1416
Esp3I CGTCTC 3 cut(s) 309, 1069, 1289
FaeI CATG 7 cut(s) 170, 248, 621, 671, 683, 1227, 1403
FalI AAGNNNNNCTT 4 cut(s) 471, 503, 1409, 1441
FaqI GGGAC 1 cut(s) 1111
FatI CATG 7 cut(s) 166, 244, 617, 667, 679, 1223, 1399
FauI CCCGC 2 cut(s) 1154, 1158
Fnu4HI GCNGC 7 cut(s) 5, 30, 240, 387, 684, 1007, 1584
FokI GGATG 6 cut(s) 202, 385, 813, 1028, 1313, 1353
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 7 cut(s) 5, 30, 240, 387, 684, 1007, 1584
FspBI CTAG 4 cut(s) 131, 414, 465, 1251
GluI GCNGC 7 cut(s) 5, 30, 240, 387, 684, 1007, 1584
GsuI CTGGAG 1 cut(s) 1400
HaeIII GGCC 2 cut(s) 469, 1259
HgaI GACGC 1 cut(s) 291
Hin1II CATG 7 cut(s) 170, 248, 621, 671, 683, 1227, 1403
HinfI GANTC 5 cut(s) 329, 706, 1099, 1266, 1511
HphI GGTGA 3 cut(s) 266, 873, 998
Hpy188I TCNGA 6 cut(s) 445, 586, 601, 976, 1112, 1470
Hpy188III TCNNGA 7 cut(s) 131, 668, 710, 729, 845, 1379, 1452
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 6 cut(s) 102, 606, 636, 752, 787, 1435
HpyCH4III ACNGT 4 cut(s) 149, 436, 676, 1054
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 6 cut(s) 248, 389, 398, 485, 1220, 1403
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 245, 395, 414, 1499, 1583
HpyF3I CTNAG 5 cut(s) 69, 285, 975, 1172, 1521
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 7 cut(s) 170, 248, 621, 671, 683, 1227, 1403
Kzo9I GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
LmnI GCTCC 3 cut(s) 342, 1384, 1439
Lsp1109I GCAGC 3 cut(s) 373, 670, 1595
LweI GCATC 4 cut(s) 407, 436, 472, 1556
MaeI CTAG 4 cut(s) 131, 414, 465, 1251
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 8 cut(s) 46, 254, 424, 436, 911, 1019, 1054, 1525
MalI GATC 7 cut(s) 61, 81, 210, 588, 1362, 1377, 1467
MboI GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
MboII GAAGA 6 cut(s) 186, 203, 581, 1159, 1292, 1355
MfeI CAATTG 3 cut(s) 249, 959, 1461
MflI RGATCY 4 cut(s) 59, 79, 586, 1360
MhlI GDGCHC 2 cut(s) 410, 838
MlyI GAGTC 2 cut(s) 1093, 1520
MmeI TCCRAC 3 cut(s) 295, 1090, 1417
Mph1103I ATGCAT 1 cut(s) 1405
MroXI GAANNNNTTC 1 cut(s) 1117
MseI TTAA 4 cut(s) 561, 722, 905, 1340
MslI CAYNNNNRTG 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 1493
MspR9I CCNGG 1 cut(s) 1203
MunI CAATTG 3 cut(s) 249, 959, 1461
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 1 cut(s) 1203
MwoI GCNNNNNNNGC 6 cut(s) 236, 245, 395, 414, 1499, 1583
NcoI CCATGG 1 cut(s) 1223
NdeII GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
NlaIII CATG 7 cut(s) 170, 248, 621, 671, 683, 1227, 1403
NlaIV GGNNCC 4 cut(s) 61, 81, 282, 1386
NmeAIII GCCGAG 1 cut(s) 770
NmuCI GTSAC 4 cut(s) 254, 424, 436, 1054
NsiI ATGCAT 1 cut(s) 1405
NspI RCATGY 2 cut(s) 248, 1403
NspV TTCGAA 1 cut(s) 490
PaeI GCATGC 1 cut(s) 1403
PaeR7I CTCGAG 1 cut(s) 403
PagI TCATGA 1 cut(s) 667
PceI AGGCCT 1 cut(s) 469
PctI GAATGC 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 1117
PfeI GAWTC 3 cut(s) 329, 706, 1266
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 7 cut(s) 6, 31, 241, 388, 685, 1008, 1585
PleI GAGTC 2 cut(s) 1093, 1519
PpsI GAGTC 2 cut(s) 1093, 1519
PshBI ATTAAT 1 cut(s) 722
PsiI TTATAA 1 cut(s) 1154
Psp6I CCWGG 1 cut(s) 1201
PspGI CCWGG 1 cut(s) 1201
PspN4I GGNNCC 4 cut(s) 61, 81, 282, 1386
PspPI GGNCC 1 cut(s) 935
PspXI VCTCGAGB 1 cut(s) 403
PsuI RGATCY 4 cut(s) 59, 79, 586, 1360
PvuII CAGCTG 1 cut(s) 1493
RsaI GTAC 2 cut(s) 692, 1051
RsaNI GTAC 2 cut(s) 691, 1050
RseI CAYNNNNRTG 1 cut(s) 831
SaqAI TTAA 4 cut(s) 561, 722, 905, 1340
SatI GCNGC 7 cut(s) 5, 30, 240, 387, 684, 1007, 1584
Sau3AI GATC 7 cut(s) 59, 79, 208, 586, 1360, 1375, 1465
Sau96I GGNCC 1 cut(s) 935
SchI GAGTC 2 cut(s) 1093, 1520
ScrFI CCNGG 1 cut(s) 1203
SduI GDGCHC 2 cut(s) 410, 838
SfaNI GCATC 4 cut(s) 407, 436, 472, 1556
SfcI CTRYAG 2 cut(s) 1125, 1578
Sfr274I CTCGAG 1 cut(s) 403
SfuI TTCGAA 1 cut(s) 490
SinI GGWCC 1 cut(s) 935
SlaI CTCGAG 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 3 cut(s) 367, 403, 837
SmoI CTYRAG 3 cut(s) 367, 403, 837
SphI GCATGC 1 cut(s) 1403
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 6 cut(s) 5, 29, 239, 1006, 1161, 1165
SspI AATATT 1 cut(s) 1239
SspMI CTAG 4 cut(s) 131, 414, 465, 1251
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 1201
StyI CCWWGG 3 cut(s) 1070, 1223, 1416
TaaI ACNGT 4 cut(s) 149, 436, 676, 1054
TaiI ACGT 1 cut(s) 276
TaqI TCGA 5 cut(s) 207, 356, 404, 490, 1188
TaqII GACCGA 2 cut(s) 711, 1096
TatI WGTACW 1 cut(s) 1049
TauI GCSGC 4 cut(s) 7, 32, 242, 1009
TfiI GAWTC 3 cut(s) 329, 706, 1266
Tru1I TTAA 4 cut(s) 561, 722, 905, 1340
Tru9I TTAA 4 cut(s) 561, 722, 905, 1340
TscAI CASTG 2 cut(s) 424, 1512
TseFI GTSAC 4 cut(s) 254, 424, 436, 1054
TseI GCWGC 3 cut(s) 386, 683, 1583
Tsp45I GTSAC 4 cut(s) 254, 424, 436, 1054
TspDTI ATGAA 6 cut(s) 487, 656, 815, 1293, 1355, 1434
TspGWI ACGGA 2 cut(s) 1236, 1313
TspRI CASTG 2 cut(s) 424, 1512
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 935
VspI ATTAAT 1 cut(s) 722
XapI RAATTY 1 cut(s) 651
XbaI TCTAGA 1 cut(s) 130
XceI RCATGY 2 cut(s) 248, 1403
XcmI CCANNNNNNNNNTGG 1 cut(s) 923
XhoI CTCGAG 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 1117
XspI CTAG 4 cut(s) 131, 414, 465, 1251
Zsp2I ATGCAT 1 cut(s) 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.