Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015983

Physical Location & Seq

Genomic Coordinates Forward (+)

50541086 .. 50548283

Gene Structure 7198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4629 bp

ATGGCGCACCAAATGTGCTTCGATTGCCTCCAGCGCCGGATTGAGTCGGAGTTCTCCGGCAAACTGGTATTCATCCACGGACTCTCCGATTCCGCTTTTCCGTTCGGCTCAAACGCCGTCGTTCAGTTGTCTAGTTCAAGTGGAGAAGCTGCTTCAGCTCCTCAATTCTTGCTCAAGTATCTACCCAGTGATAACCAGAATTGCTTGACCAAATTTGTGGATGAGTATATACTGGATGATGCTGATGTAAATCGAGATGGAGAAGAAGTCAGTTCTGAAATTTGCACTGATGAAAAGCCGAAATTGGCTTCTTTACCAACTGAGTCGCAGTGTTTATCAAATGGTGGGAAAGCATTGCCACAGCGTTCTAATTGTAATCATTCGGCTAGGTTTTCTTGCTCAAGGGTAATCAGTGCGTTGGCACCGGTTACTGAAGTTGGCCTTTCTTCAGACTCCATCGAAGAGCTTGCTTCCAGCTTTTTGTCTGGGTCTATGGAAGATCACATATTGAACTCACTTAGTCTCTTGATTGAAGGGAAAGCTTCGGGAAGAGATAGTGTCAACTTTCTTAATTTACTTGGGGTACCATCATTTGATGAGAATCCGTTTCCTGGCTCCTTAAGGCATCCAAATATCGCTCCCATACTCAGGATGGTTAAGACATCTGGTTATATTGATGTAGTTCTTCCCAAAGCTCCATATACCTTGGAAAACATTCTCCATTATAGCCCTGATGCCCTAAAGTCTGATTGGCATATAAGGTTTCTAGTGTATCAGTTGCTCTCAGCTCTAGCTTATATTCATGGTTTAGGGGTTGCTCATGGCAATATATGTCCGTCCAGTGTAATGCTTTCTGAGTCATGCTGGTCTTGGCTGTGTGTATGTGATAAGCCTGGGTTAGGGTTTAATTCAAGTTCAAGAGGTAATGGGAATACAATTACTGCACCTGAAAAGGTTGGTTGCTCTGTACCAGGTTGTCCTTCTCAAGGTCTTTATGCTGATTTGAAGCTTTCCCCGTCTATAGACTGGCATTGGGACTTTAATCAGTGGTGGAGGGGAGAGATTAGTAATTTTGAATATCTACTCATCTTGAATAGATTAGCTGGGAGAAGGTGGGGTGATCACACATTTCATATAGTGATGCCATGGGTAATAGATTTTAGTACAAAACCTGATGAGAATTCTGAGGCAGGGTGGCGGGATTTGAGTAAGAGTAAATGGAGGTTGGCTAAAGGTGATGAGCAGTTGGACTTCACCTATTCAACCTCAGAATTCCCACATCATGTTTCTGATGAATGTCTTTCTGAATTGGCTGTCTGCAGCTATAAAGCAAGGAGGTTGCCTTTGAGTGTTCTACGTATGGCTGTTCGCTCAGTCTATGAACCTAATGAATATCCTTCTACAATGCAAAGACTCTATCAATGGACCCCTGATGAATGCATTCCGGAGTTTTACTGCGATCCCCAAGTTTTCAATTCACTTCATGCTGGTATGACCGACTTAGCTGTACCTTCATGGGCAGGTGGTCCTGAGGAATTCATCAAATTGCATCGTGAAGCATTAGAAAGCGATCGGGTTTCCCGCCAACTTCATCACTGGATTGATATCACCTTTGGTTACAAGATGTCAGGTCAGGCAGCTGTTGCAGCAAAGAATGTAATGCTCCCTTCTTCAGAGTCCATGATGCCAAGGTCAGTGGGACGCCGTCAGCTTTTTACTAAACCTCATCCTATGCGTCGATGTGCAATATGGAAGCCATGTGATAGCACCAATGAGTCAGCTTCATATCAAGGAGAAATGAATGAATTAAGAAGCGAAAGTTCTGTCCTATCTGACATGGCTTATTTGCAACTATTAGAAGATGCATCAGCCTTTTGCGAACATGCTATGGAATTGAGTGACCTCTATGGGTACCATCTCGAATTTGGCAAGGACATTGCTCCTGTAGAAGAACAATCGAGTGAGAATGTTAAGAAAAGCATACCTCGATCATCTGACACTAAGAAACACCAGTGGTTGCCATTACAAATTGATACAAATTATCTTCTTGAGCATATTAAGGTGGAGGATGAAGGCTCCACTGGATATCAAGAGCTATTGCTTTGGAAGCAGAAATCATCTTGTTTGAAGACATTTACTGAAGATGTTGCAAGGGACATATTTTCTATTGGTTGTCTCTTAGCAGAACTTTATTTGAGGAGGCCACTTTTCGATCCAGCCTCACTGACCATGAGGCCATCAGCGAAGTCTCTTTTGGAATCACCTTACTTTCCTTCTACAGTCAAGGCATCCTACTTGTTTCTTGCCCCACTCCATCTTCGGGCTAAAGATGGATCCTGCCTCCATTATGCCGCAAACTATGCAAAGCAAGGAGTCCTCAAGGCAATGGGAACATTTGCAGCTGAAATGTGTGCTCCTTTTTGCTTATCACTTGTGACTACAGGTTATTCACATCTAAAGGTTTCTATTCTGCAAGACTCATTTGTACAAGAGATATGGAATCGGGTTGGCAAACAAGCATATCTTGAAACCGTACATCCTCTAGTAATAGTGAACTTGTATGCTGCTGCTCATAAGAGTTCAGCAGCTGCCGCTTCCGTGCTGCTGCTCGGCTCAAGTGAAGAGCTTGGTATTCCTATTACTATTCATCAGACAATCTTACCATTGATCCAGTGCTTTGGGAAAGGTCTAAGTACTGATGGAATTGATGTGCTGATTCGAATCGGTGGTCTATTGGGGGAAAGCTTCATAGTCAGACAAATGCTACCATTGCTAAAACATGTAGTTCGTTCGTGTGTTGACATTTCACATGGCCTGGTTGCATTCTTGCCAAGGGAGGTGGTTGTAAAGGAGCTAATTGAAGTTGCTGCCACAACCCTTATGGTTGTTTGTCAGCGGATAGGACCAGATTTGACGGCATTACATGTTTTGCCACAACTGAAGGAGCTATTCGATGAGCTTGCTTTCTCACCTGAAACTGCTAATGCATCTACTTCCCCCGGCAGAAGGTCGAAGATTTCAAAGTTAAAAGACGGGGCTCTGATTGAAAGTCGTATGGACCTTGCGCTGCTTCTGTATCCTTCTTTTGCATCCCTTCTTGGGATAGAGAAGCTTCGTCAGTGTTGTGCAACATGGTTATTACTTGAGCGATATCTTCTGCAATTTCATAATTGGAAGTGGGAACACACAGGAGAATTGTCGCGAAGTGGTTCAGACACTATACTCGATAAAGGAGCATACAGAAAGGGCTCAACTCCTGAATACAGTCCTGCTAAGCTGTTGCTTAATGGGGTTGGATGGTCAATTCCGCAATCTCAAGGAACTAGAGGTGCCAAAAACTTGATGCCTCAGAAACGGTTTCATGCAGTGCATCAGCGTCGAACAGAAATGCATGCCGCAGCAGCATCAAATTATAAATATGAGCCCTGGTTTTGGTTCCCTAGTCCAGCTGCTAGCTGGGATGGGCCTGATTTCCTTGGGCGTGCTGGGGGTGTGAAAGATGAACATCCATGGAAGATCAGAGCATCTGTTATACACTCTGTCCGTGCTCATCCTGGAGCCTTAAGATATTTAGCCGTCTGTCCAGATGAATCCACGGTTTTTACTGCAGGGATTGGTGCAGGCTTCAGAGGAACTGTTCAGAAGTGGGAGCTGATGGAAGAGTTGCTTCCTGTGACGGAACAATACATGTCTGGAATAGCCGAACAGGGGAAATTAATTTCAGTATTTTCCGAACCATCAGTGGATTCTGCACATAATGGAAGCCCTCCATCTTCTTCTTCTAGGGCCAGTGTTGACCAGAGTAATATTCTCAGTCCCAATACAATGTCCAGTGGAATATTGACTGGTGCATTTGATGGGAGCCTGTATACTTGTATGCATCAAACTGAATTTGGTGAAACGCTTGTTGCTGGCACTGGAGATGGTTCTCTGAGGTTCATTGATGTTGTCCGAGGGGAAAAGCTGCATCTTTGGAAGGGGAATTATCTTGAGTCAGGCTTTCCTTCTATTGTTTCTACCTTATGCTCTTGTGGGTCTGACAAAATGCAACCAGATGGAGCTTCTTCACCATCTTGGATTGCAGCTGGAATGAGTTCTGGCCATTGTAGGTTATTTGATGCAAGGAGTGGAAATGTTATTGCCTCTTGGCGGGCTCATGATGGATACGTTACAAAGTTGGCTGCACCAGAAGACTATTTGCTTGTGTCGAGCTCTCTTGACAAGACTTTAAGGATTTGGGACTTGAGGAGGAATGTGCCATCTCAGCCCACAATTCTTAGAGGTCATACAGATGGTGTATCTGCTTTCTCTGTATGGGGCCAAGATGTTATTTCAATTGCCAGAACTAAAATTGGACTGTCTTCTTTATCAAAATCCCCTGATGATGTAAACAACAGCAAACTCATCACCATTTCATTCAAATTATATTCCTCTTTTCACTTGCAAGTACTCACTTCCATTTCAACAGGATGGACAGCAGGCCGTTACATGTCAAAGGCTCCACATGGCAGACCACGGAGCAAGAAGCTTTTCAGTGTTATCAAGCATAAGCATTTTACCCTTCTCAAGGTTGTTCCTTGTTGGGACAGAAGATGGTTACTTAAGAATATGTTGTTAATCCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006950 GO:0006952 GO:0006955 GO:0007034 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0015031 GO:0015833 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042742 GO:0042886 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0098542 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Pkinase WD40

Protein Analysis

1542

Amino Acids

170.92

Weight (kDa)

6.55

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beach	PF02138	348 - 558	4.7e-42	Beige/BEACH domain
WD40_CDC20-Fz	PF24807	1286 - 1435	7.2e-07	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	1299 - 1418	2.1e-08	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	1357 - 1441	5e-09	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	1360 - 1437	5.2e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18525
fragaria_vesca	FvH4_4g21250 FvH4_4g21250
malus_domestica	MD13G1143700.v1.1
prunus_persica	Prupe.1G108200_v2.0.a1
pyrus_communis	pycom13g12460
rosa_chinensis	RchiOBHm_Chr4g0426871
rosa_laevigata	RLG00000007272
rosa_multiflora	Rmu_sc0000953.1_g000015
rosa_roxburghii	Rroxscaffold_5G00368840
rosa_samantha	Rh4AG270500 Rh4BG276800 Rh4CG291500 Rh4DG274000
rosa_wichuraiana	Rw4G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3414
AarI	CACCTGC	1 cut(s)	1511
Acc36I	ACCTGC	1 cut(s)	1511
Acc65I	GGTACC	2 cut(s)	583, 1911
AccB1I	GGYRCC	4 cut(s)	421, 583, 1911, 3329
AccI	GTMKAC	1 cut(s)	3869
AccII	CGCG	1 cut(s)	3202
AccIII	TCCGGA	1 cut(s)	1444
AciI	CCGC	9 cut(s)	93, 1198, 1582, 2352, 2592, 2896, 3308, 3396, 4150
AclWI	GGATC	5 cut(s)	1454, 2207, 2328, 2341, 2662
AcoI	YGGCCR	1 cut(s)	4099
AcsI	RAATTY	7 cut(s)	212, 279, 1180, 1271, 1535, 1922, 3890
AcuI	CTGAAG	7 cut(s)	138, 432, 453, 1656, 2160, 2960, 3610
AcyI	GRCGYC	1 cut(s)	1702
AfaI	GTAC	9 cut(s)	585, 969, 1165, 1509, 1913, 2487, 2535, 2695, 4449
AflII	CTTAAG	3 cut(s)	619, 3562, 4601
AflIII	ACRYGT	4 cut(s)	2779, 2923, 3687, 4488
AgeI	ACCGGT	1 cut(s)	424
AjnI	CCWGG	6 cut(s)	610, 892, 970, 2814, 3425, 3553
AjuI	GAANNNNNNNTTGG	2 cut(s)	2237, 2269
Alw21I	GWGCWC	3 cut(s)	2416, 3550, 4214
Alw26I	GTCTC	3 cut(s)	527, 2180, 2253
AlwI	GGATC	5 cut(s)	1454, 2207, 2328, 2341, 2662
AlwNI	CAGNNNCTG	1 cut(s)	2588
Aor13HI	TCCGGA	1 cut(s)	1444
AoxI	GGCC	9 cut(s)	439, 2201, 2234, 2812, 3464, 3786, 4099, 4318, 4480
ApoI	RAATTY	7 cut(s)	212, 279, 1180, 1271, 1535, 1922, 3890
ArsI	GACNNNNNNTTYG	4 cut(s)	1809, 1841, 2713, 2745
AseI	ATTAAT	1 cut(s)	3716
AsiGI	ACCGGT	1 cut(s)	424
Asp700I	GAANNNNTTC	5 cut(s)	714, 1440, 3208, 4093, 4529
Asp718I	GGTACC	2 cut(s)	583, 1911
AspLEI	GCGC	3 cut(s)	7, 36, 3067
AspS9I	GGNCC	7 cut(s)	1425, 1526, 2903, 3058, 3464, 3786, 4318
AsuC2I	CCSGG	1 cut(s)	3000
AsuHPI	GGTGA	9 cut(s)	1130, 1246, 1247, 1600, 2253, 2961, 3908, 4059, 4399
AsuII	TTCGAA	1 cut(s)	2719
AsuNHI	GCTAGC	1 cut(s)	3452
AvaII	GGWCC	4 cut(s)	1425, 1526, 2903, 3058
AxyI	CCTNAGG	1 cut(s)	1530
BalI	TGGCCA	1 cut(s)	4101
BamHI	GGATCC	1 cut(s)	2333
BanI	GGYRCC	4 cut(s)	421, 583, 1911, 3329
BanII	GRGCYC	5 cut(s)	3040, 3251, 3426, 4156, 4214
BbsI	GAAGAC	3 cut(s)	2135, 4197, 4353
Bbv12I	GWGCWC	3 cut(s)	2416, 3550, 4214
BceAI	ACGGC	5 cut(s)	101, 1689, 2931, 3560, 4467
BcgI	CGANNNNNNTGC	6 cut(s)	449, 483, 2942, 2976, 3359, 3393
BciT130I	CCWGG	6 cut(s)	612, 894, 972, 2816, 3427, 3555
BciVI	GTATCC	2 cut(s)	3087, 4157
BclI	TGATCA	1 cut(s)	1120
BcnI	CCSGG	1 cut(s)	3000
BcoDI	GTCTC	3 cut(s)	527, 2180, 2253
BfaI	CTAG	9 cut(s)	132, 387, 767, 791, 2543, 3324, 3441, 3453, 3783
BfmI	CTRYAG	6 cut(s)	1020, 1318, 1944, 2277, 2439, 3606
BfoI	RGCGCY	1 cut(s)	37
BfrI	CTTAAG	3 cut(s)	619, 3562, 4601
BfuAI	ACCTGC	1 cut(s)	1511
BfuI	GTATCC	2 cut(s)	3087, 4157
BlpI	GCTNAGC	1 cut(s)	3273
BmcAI	AGTACT	2 cut(s)	2695, 4449
Bme1390I	CCNGG	7 cut(s)	612, 894, 972, 2816, 3000, 3427, 3555
Bme18I	GGWCC	4 cut(s)	1425, 1526, 2903, 3058
BmgT120I	GGNCC	7 cut(s)	1425, 1526, 2903, 3058, 3464, 3786, 4318
BmrFI	CCNGG	7 cut(s)	612, 894, 972, 2816, 3000, 3427, 3555
BmrI	ACTGGG	1 cut(s)	180
BmtI	GCTAGC	1 cut(s)	3456
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	3 cut(s)	2135, 4197, 4353
BpmI	CTGGAG	3 cut(s)	14, 3576, 3939
Bpu1102I	GCTNAGC	1 cut(s)	3273
Bpu14I	TTCGAA	1 cut(s)	2719
BpuMI	CCSGG	1 cut(s)	3000
BsaAI	YACGTR	1 cut(s)	1358
BsaBI	GATNNNNATC	5 cut(s)	249, 600, 1604, 2720, 3504
BsaHI	GRCGYC	1 cut(s)	1702
BsaWI	WCCGGW	2 cut(s)	424, 1444
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 252, 282
Bse118I	RCCGGY	1 cut(s)	424
Bse21I	CCTNAGG	1 cut(s)	1530
Bse3DI	GCAATG	4 cut(s)	353, 1935, 2391, 2768
Bse8I	GATNNNNATC	5 cut(s)	249, 600, 1604, 2720, 3504
BseAI	TCCGGA	1 cut(s)	1444
BseBI	CCWGG	6 cut(s)	612, 894, 972, 2816, 3427, 3555
BseJI	GATNNNNATC	5 cut(s)	249, 600, 1604, 2720, 3504
BseMI	GCAATG	4 cut(s)	353, 1935, 2391, 2768
BseRI	GAGGAG	3 cut(s)	150, 2212, 4261
BseYI	CCCAGC	3 cut(s)	1103, 3456, 3485
BsgI	GTGCAG	4 cut(s)	927, 3639, 3735, 4167
Bsh1236I	CGCG	1 cut(s)	3202
Bsh1285I	CGRYCG	1 cut(s)	1573
BshFI	GGCC	9 cut(s)	441, 2203, 2236, 2814, 3466, 3788, 4101, 4320, 4482
BshNI	GGYRCC	4 cut(s)	421, 583, 1911, 3329
BshTI	ACCGGT	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	1573
BsiHKAI	GWGCWC	3 cut(s)	2416, 3550, 4214
BsiSI	CCGG	5 cut(s)	37, 57, 425, 1445, 3000
BslFI	GGGAC	6 cut(s)	1049, 1713, 2168, 3801, 4253, 4598
BsmAI	GTCTC	3 cut(s)	527, 2180, 2253
BsmFI	GGGAC	6 cut(s)	1049, 1713, 2168, 3801, 4253, 4598
BsmI	GAATGC	3 cut(s)	1440, 1442, 2822
BsnI	GGCC	9 cut(s)	441, 2203, 2236, 2814, 3466, 3788, 4101, 4320, 4482
Bsp119I	TTCGAA	1 cut(s)	2719
Bsp1286I	GDGCHC	7 cut(s)	2416, 3040, 3251, 3426, 3550, 4156, 4214
Bsp13I	TCCGGA	1 cut(s)	1444
Bsp1407I	TGTACA	1 cut(s)	2485
Bsp143I	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
Bsp1720I	GCTNAGC	1 cut(s)	3273
Bsp19I	CCATGG	2 cut(s)	1145, 3509
Bsp68I	TCGCGA	1 cut(s)	3202
BspACI	CCGC	9 cut(s)	93, 1198, 1582, 2352, 2592, 2896, 3308, 3396, 4150
BspANI	GGCC	9 cut(s)	441, 2203, 2236, 2814, 3466, 3788, 4101, 4320, 4482
BspEI	TCCGGA	1 cut(s)	1444
BspFNI	CGCG	1 cut(s)	3202
BspHI	TCATGA	1 cut(s)	4156
BspMAI	CTGCAG	2 cut(s)	1322, 3610
BspMI	ACCTGC	1 cut(s)	1511
BspOI	GCTAGC	1 cut(s)	3456
BspPI	GGATC	5 cut(s)	1454, 2207, 2328, 2341, 2662
BspQI	GCTCTTC	2 cut(s)	456, 2616
BspT104I	TTCGAA	1 cut(s)	2719
BspT107I	GGYRCC	4 cut(s)	421, 583, 1911, 3329
BspTI	CTTAAG	3 cut(s)	619, 3562, 4601
BsrDI	GCAATG	4 cut(s)	353, 1935, 2391, 2768
BsrFI	RCCGGY	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	2485
BssAI	RCCGGY	1 cut(s)	424
BssMI	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
BssNAI	GTATAC	1 cut(s)	3870
BssNI	GRCGYC	1 cut(s)	1702
BssT1I	CCWWGG	6 cut(s)	705, 1145, 1688, 2831, 3475, 3509
Bst1107I	GTATAC	1 cut(s)	3870
Bst2UI	CCWGG	6 cut(s)	612, 894, 972, 2816, 3427, 3555
Bst4CI	ACNGT	7 cut(s)	2281, 2533, 3266, 3357, 3598, 3637, 4359
Bst6I	CTCTTC	4 cut(s)	456, 544, 2616, 3654
BstACI	GRCGYC	1 cut(s)	1702
BstAFI	CTTAAG	3 cut(s)	619, 3562, 4601
BstAPI	GCANNNNNTGC	2 cut(s)	1643, 2360
BstAUI	TGTACA	1 cut(s)	2485
BstBAI	YACGTR	1 cut(s)	1358
BstBI	TTCGAA	1 cut(s)	2719
BstC8I	GCNNGC	9 cut(s)	468, 2961, 3393, 3454, 3483, 3622, 3913, 4152, 4480
BstDSI	CCRYGG	5 cut(s)	76, 1145, 3509, 3594, 4514
BstENI	CCTNNNNNAGG	3 cut(s)	897, 984, 4565
BstFNI	CGCG	1 cut(s)	3202
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	3 cut(s)	7, 36, 3067
BstKTI	GATC	9 cut(s)	502, 1123, 1462, 1573, 1991, 2215, 2336, 2670, 3519
BstMAI	GTCTC	3 cut(s)	527, 2180, 2253
BstMBI	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
BstMCI	CGRYCG	1 cut(s)	1573
BstNI	CCWGG	6 cut(s)	612, 894, 972, 2816, 3427, 3555
BstNSI	RCATGY	6 cut(s)	1886, 2783, 2927, 3395, 3691, 4492
BstSCI	CCNGG	7 cut(s)	610, 892, 970, 2814, 2998, 3425, 3553
BstSFI	CTRYAG	6 cut(s)	1020, 1318, 1944, 2277, 2439, 3606
BstSNI	TACGTA	1 cut(s)	1358
BstUI	CGCG	1 cut(s)	3202
BstV2I	GAAGAC	3 cut(s)	2135, 4197, 4353
BstX2I	RGATCY	1 cut(s)	2333
BstXI	CCANNNNNNTGG	2 cut(s)	217, 2678
BstYI	RGATCY	1 cut(s)	2333
BstZ17I	GTATAC	1 cut(s)	3870
Bsu36I	CCTNAGG	1 cut(s)	1530
BsuI	GTATCC	2 cut(s)	3087, 4157
BsuRI	GGCC	9 cut(s)	441, 2203, 2236, 2814, 3466, 3788, 4101, 4320, 4482
BtgI	CCRYGG	5 cut(s)	76, 1145, 3509, 3594, 4514
BtsI	GCAGTG	2 cut(s)	335, 3372
BtuMI	TCGCGA	1 cut(s)	3202
BveI	ACCTGC	1 cut(s)	1511
Cac8I	GCNNGC	9 cut(s)	468, 2961, 3393, 3454, 3483, 3622, 3913, 4152, 4480
CaiI	CAGNNNCTG	1 cut(s)	2588
CciI	TCATGA	1 cut(s)	4156
CfoI	GCGC	3 cut(s)	7, 36, 3067
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	7 cut(s)	1425, 1526, 2903, 3058, 3464, 3786, 4318
CseI	GACGC	3 cut(s)	1710, 1724, 3365
CsiI	ACCWGGT	1 cut(s)	970
Csp6I	GTAC	9 cut(s)	584, 968, 1164, 1508, 1912, 2486, 2534, 2694, 4448
CspAI	ACCGGT	1 cut(s)	424
CspCI	CAANNNNNGTGG	4 cut(s)	1677, 1712, 2820, 2855
CviQI	GTAC	9 cut(s)	584, 968, 1164, 1508, 1912, 2486, 2534, 2694, 4448
DpnI	GATC	9 cut(s)	501, 1122, 1461, 1572, 1990, 2214, 2335, 2669, 3518
DpnII	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
EaeI	YGGCCR	1 cut(s)	4099
Eam1104I	CTCTTC	4 cut(s)	456, 544, 2616, 3654
EarI	CTCTTC	4 cut(s)	456, 544, 2616, 3654
Ecl136II	GAGCTC	1 cut(s)	4212
Eco105I	TACGTA	1 cut(s)	1358
Eco130I	CCWWGG	6 cut(s)	705, 1145, 1688, 2831, 3475, 3509
Eco24I	GRGCYC	5 cut(s)	3040, 3251, 3426, 4156, 4214
Eco32I	GATATC	3 cut(s)	1606, 2087, 3152
Eco47I	GGWCC	4 cut(s)	1425, 1526, 2903, 3058
Eco53kI	GAGCTC	1 cut(s)	4212
Eco57I	CTGAAG	7 cut(s)	138, 432, 453, 1656, 2160, 2960, 3610
Eco81I	CCTNAGG	1 cut(s)	1530
EcoICRI	GAGCTC	1 cut(s)	4212
EcoNI	CCTNNNNNAGG	3 cut(s)	897, 984, 4565
EcoRI	GAATTC	3 cut(s)	1180, 1271, 1535
EcoRII	CCWGG	6 cut(s)	610, 892, 970, 2814, 3425, 3553
EcoRV	GATATC	3 cut(s)	1606, 2087, 3152
EcoT14I	CCWWGG	6 cut(s)	705, 1145, 1688, 2831, 3475, 3509
EcoT22I	ATGCAT	5 cut(s)	1442, 1867, 2989, 3393, 3882
EcoT38I	GRGCYC	5 cut(s)	3040, 3251, 3426, 4156, 4214
ErhI	CCWWGG	6 cut(s)	705, 1145, 1688, 2831, 3475, 3509
FalI	AAGNNNNNCTT	6 cut(s)	426, 458, 2508, 2540, 3651, 3683
FaqI	GGGAC	6 cut(s)	1049, 1713, 2168, 3801, 4253, 4598
FauI	CCCGC	3 cut(s)	1191, 1589, 4143
FbaI	TGATCA	1 cut(s)	1120
FblI	GTMKAC	1 cut(s)	3869
FriOI	GRGCYC	5 cut(s)	3040, 3251, 3426, 4156, 4214
FspBI	CTAG	9 cut(s)	132, 387, 767, 791, 2543, 3324, 3441, 3453, 3783
GlaI	GCGC	3 cut(s)	6, 35, 3066
GsaI	CCCAGC	3 cut(s)	1107, 3460, 3489
GsuI	CTGGAG	3 cut(s)	14, 3576, 3939
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	9 cut(s)	441, 2203, 2236, 2814, 3466, 3788, 4101, 4320, 4482
HapII	CCGG	5 cut(s)	37, 57, 425, 1445, 3000
HgaI	GACGC	3 cut(s)	1710, 1724, 3365
HhaI	GCGC	3 cut(s)	7, 36, 3067
Hin1I	GRCGYC	1 cut(s)	1702
Hin6I	GCGC	3 cut(s)	5, 34, 3065
HinP1I	GCGC	3 cut(s)	5, 34, 3065
HincII	GTYRAC	3 cut(s)	562, 2800, 3796
HindII	GTYRAC	3 cut(s)	562, 2800, 3796
HindIII	AAGCTT	5 cut(s)	540, 1007, 2743, 3110, 4526
HpaII	CCGG	5 cut(s)	37, 57, 425, 1445, 3000
HphI	GGTGA	9 cut(s)	1130, 1246, 1247, 1600, 2253, 2961, 3908, 4059, 4399
Hpy166II	GTNNAC	6 cut(s)	562, 2554, 2800, 3796, 3870, 4390
Hpy8I	GTNNAC	6 cut(s)	562, 2554, 2800, 3796, 3870, 4390
Hpy99I	CGWCG	3 cut(s)	122, 1740, 3381
HpyCH4III	ACNGT	7 cut(s)	2281, 2533, 3266, 3357, 3598, 3637, 4359
HpyCH4IV	ACGT	2 cut(s)	1357, 4167
HpySE526I	ACGT	2 cut(s)	1357, 4167
Hsp92I	GRCGYC	1 cut(s)	1702
HspAI	GCGC	3 cut(s)	5, 34, 3065
Kpn2I	TCCGGA	1 cut(s)	1444
KpnI	GGTACC	2 cut(s)	587, 1915
Ksp22I	TGATCA	1 cut(s)	1120
Kzo9I	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
LguI	GCTCTTC	2 cut(s)	456, 2616
MabI	ACCWGGT	1 cut(s)	970
MaeI	CTAG	9 cut(s)	132, 387, 767, 791, 2543, 3324, 3441, 3453, 3783
MaeII	ACGT	2 cut(s)	1357, 4167
MaeIII	GTNAC	8 cut(s)	427, 1616, 1898, 2434, 3673, 4168, 4484, 4596
MalI	GATC	9 cut(s)	501, 1122, 1461, 1572, 1990, 2214, 2335, 2669, 3518
MboI	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
MfeI	CAATTG	1 cut(s)	4335
MflI	RGATCY	1 cut(s)	2333
MhlI	GDGCHC	7 cut(s)	2416, 3040, 3251, 3426, 3550, 4156, 4214
MlsI	TGGCCA	1 cut(s)	4101
MluNI	TGGCCA	1 cut(s)	4101
MmeI	TCCRAC	3 cut(s)	27, 1227, 3274
Mox20I	TGGCCA	1 cut(s)	4101
Mph1103I	ATGCAT	5 cut(s)	1442, 1867, 2989, 3393, 3882
MroI	TCCGGA	1 cut(s)	1444
MroXI	GAANNNNTTC	5 cut(s)	714, 1440, 3208, 4093, 4529
MscI	TGGCCA	1 cut(s)	4101
MslI	CAYNNNNRTG	1 cut(s)	4290
Msp20I	TGGCCA	1 cut(s)	4101
MspA1I	CMGCKG	6 cut(s)	1640, 2402, 2588, 2896, 3449, 4085
MspCI	CTTAAG	3 cut(s)	619, 3562, 4601
MspI	CCGG	5 cut(s)	37, 57, 425, 1445, 3000
MspR9I	CCNGG	7 cut(s)	612, 894, 972, 2816, 3000, 3427, 3555
MunI	CAATTG	1 cut(s)	4335
Mva1269I	GAATGC	3 cut(s)	1440, 1442, 2822
MvaI	CCWGG	6 cut(s)	612, 894, 972, 2816, 3427, 3555
MvnI	CGCG	1 cut(s)	3202
NciI	CCSGG	1 cut(s)	3000
NcoI	CCATGG	2 cut(s)	1145, 3509
NdeII	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
NheI	GCTAGC	1 cut(s)	3452
NmeAIII	GCCGAG	1 cut(s)	2589
NmuCI	GTSAC	3 cut(s)	1898, 2434, 3673
NruI	TCGCGA	1 cut(s)	3202
NsiI	ATGCAT	5 cut(s)	1442, 1867, 2989, 3393, 3882
NspI	RCATGY	6 cut(s)	1886, 2783, 2927, 3395, 3691, 4492
NspV	TTCGAA	1 cut(s)	2719
PaeI	GCATGC	1 cut(s)	3395
PagI	TCATGA	1 cut(s)	4156
PaqCI	CACCTGC	1 cut(s)	1511
PciI	ACATGT	4 cut(s)	2779, 2923, 3687, 4488
PciSI	GCTCTTC	2 cut(s)	456, 2616
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	3 cut(s)	1440, 1442, 2822
PdmI	GAANNNNTTC	5 cut(s)	714, 1440, 3208, 4093, 4529
PfeI	GAWTC	8 cut(s)	89, 601, 2258, 2500, 2716, 2721, 3590, 3746
PflFI	GACNNNGTC	1 cut(s)	1704
PfoI	TCCNGGA	1 cut(s)	3553
PinAI	ACCGGT	1 cut(s)	424
Ple19I	CGATCG	1 cut(s)	1573
Ppu21I	YACGTR	1 cut(s)	1358
PscI	ACATGT	4 cut(s)	2779, 2923, 3687, 4488
PshBI	ATTAAT	1 cut(s)	3716
PsiI	TTATAA	1 cut(s)	3414
Psp124BI	GAGCTC	1 cut(s)	4214
Psp6I	CCWGG	6 cut(s)	610, 892, 970, 2814, 3425, 3553
PspFI	CCCAGC	3 cut(s)	1103, 3456, 3485
PspGI	CCWGG	6 cut(s)	610, 892, 970, 2814, 3425, 3553
PspPI	GGNCC	7 cut(s)	1425, 1526, 2903, 3058, 3464, 3786, 4318
PstI	CTGCAG	2 cut(s)	1322, 3610
PstNI	CAGNNNCTG	1 cut(s)	2588
PsuI	RGATCY	1 cut(s)	2333
PsyI	GACNNNGTC	1 cut(s)	1704
PvuI	CGATCG	1 cut(s)	1573
PvuII	CAGCTG	5 cut(s)	1640, 2402, 2588, 3449, 4085
RruI	TCGCGA	1 cut(s)	3202
RsaI	GTAC	9 cut(s)	585, 969, 1165, 1509, 1913, 2487, 2535, 2695, 4449
RsaNI	GTAC	9 cut(s)	584, 968, 1164, 1508, 1912, 2486, 2534, 2694, 4448
RseI	CAYNNNNRTG	1 cut(s)	4290
SacI	GAGCTC	1 cut(s)	4214
SapI	GCTCTTC	2 cut(s)	456, 2616
Sau3AI	GATC	9 cut(s)	499, 1120, 1459, 1570, 1988, 2212, 2333, 2667, 3516
Sau96I	GGNCC	7 cut(s)	1425, 1526, 2903, 3058, 3464, 3786, 4318
ScaI	AGTACT	2 cut(s)	2695, 4449
ScrFI	CCNGG	7 cut(s)	612, 894, 972, 2816, 3000, 3427, 3555
SduI	GDGCHC	7 cut(s)	2416, 3040, 3251, 3426, 3550, 4156, 4214
SexAI	ACCWGGT	1 cut(s)	970
SfcI	CTRYAG	6 cut(s)	1020, 1318, 1944, 2277, 2439, 3606
SfuI	TTCGAA	1 cut(s)	2719
SinI	GGWCC	4 cut(s)	1425, 1526, 2903, 3058
SmiMI	CAYNNNNRTG	1 cut(s)	4290
SnaBI	TACGTA	1 cut(s)	1358
SphI	GCATGC	1 cut(s)	3395
SsiI	CCGC	9 cut(s)	93, 1198, 1582, 2352, 2592, 2896, 3308, 3396, 4150
SspI	AATATT	2 cut(s)	3808, 3840
SspMI	CTAG	9 cut(s)	132, 387, 767, 791, 2543, 3324, 3441, 3453, 3783
SstI	GAGCTC	1 cut(s)	4214
StyD4I	CCNGG	7 cut(s)	610, 892, 970, 2814, 2998, 3425, 3553
StyI	CCWWGG	6 cut(s)	705, 1145, 1688, 2831, 3475, 3509
TaaI	ACNGT	7 cut(s)	2281, 2533, 3266, 3357, 3598, 3637, 4359
TaiI	ACGT	2 cut(s)	1360, 4170
TaqII	GACCGA	1 cut(s)	1511
TatI	WGTACW	4 cut(s)	1163, 2485, 2693, 4447
TauI	GCSGC	3 cut(s)	2354, 2594, 3398
TfiI	GAWTC	8 cut(s)	89, 601, 2258, 2500, 2716, 2721, 3590, 3746
TseFI	GTSAC	3 cut(s)	1898, 2434, 3673
Tsp45I	GTSAC	3 cut(s)	1898, 2434, 3673
TspGWI	ACGGA	8 cut(s)	90, 93, 594, 825, 2587, 3533, 3692, 4531
Tth111I	GACNNNGTC	1 cut(s)	1704
Vha464I	CTTAAG	3 cut(s)	619, 3562, 4601
VpaK11BI	GGWCC	4 cut(s)	1425, 1526, 2903, 3058
VspI	ATTAAT	1 cut(s)	3716
XagI	CCTNNNNNAGG	3 cut(s)	897, 984, 4565
XapI	RAATTY	7 cut(s)	212, 279, 1180, 1271, 1535, 1922, 3890
XceI	RCATGY	6 cut(s)	1886, 2783, 2927, 3395, 3691, 4492
XcmI	CCANNNNNNNNNTGG	4 cut(s)	649, 1922, 2878, 3453
XmiI	GTMKAC	1 cut(s)	3869
XmnI	GAANNNNTTC	5 cut(s)	714, 1440, 3208, 4093, 4529
XspI	CTAG	9 cut(s)	132, 387, 767, 791, 2543, 3324, 3441, 3453, 3783
ZrmI	AGTACT	2 cut(s)	2695, 4449
Zsp2I	ATGCAT	5 cut(s)	1442, 1867, 2989, 3393, 3882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.