Rroxscaffold_5G00377650

Importin-9

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
58253342 .. 58264261
10920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377650.1

Sequence Viewer

Length: 3111 bp
ATGGCGAACCTCAACATCGTTCTCGATGAAGATCAGCAATGGCTGCTCAATTGCTTGTCCGCTACTCTCGACCCCAACCACGAGGTTCGCTCTTTCGCCGAAGCCTCGCTTAATCAGGCTTCTCTGCAACCAGGTTTTGGAAGTGCGTTATCCAAGGTTGCTGCAAATAGGGAGCTCTCGCTAGGGTTGCGCCAGATATCCTTTTATTATCAAGCTGCTGTCCTTCTAAAGCAGTTTATTAAAAAACACTGGAACGAAGGCGATGAAGCATTTGAACACCCTGCTGTTTCAAGTGATGAGAAGGTGGTTGTGCGCAAACTTCTTTTGTTTTCATTAGATGATCCTCATAGGAAAATCTGTACAGCAATTAGTATGGCTGTAGCATCAATAGCAGGTTATGATTGGCCAGAAGATTGGCCGGACTTATTACCATATCTAATGAAGTTGATTAACAACCAAACCAATATGAATGGAGTGCACGGAGCGCTTAGATGCTTGGCTCTTCTCTCTGTGGACTTGGATGATACTGTGGTCCCGACGCTAATTCCTGCTTTGTTCCCATGCTTACTTACAATTGTATCATCTCCTCAGGTGTATGACAAATATTTACGCACAAAATCCTATTCAATTGTTTATTCATGTATCGCCGTGTTGGGGGTGATGAGTGGTGTATATAAGACGGAAACCACTGCATTAATAGCACCTATGCTAAAACCATGGATGAATCAATTTTCAGCAATCCTGAGTCATCCAGTGCAATCCGAAGATCCTGATGATTGGAGCATAAGAATGGAGGTATTGAAGTGCTTGAATCAGTTTGTTCAAAATTTCCCAAGCCTTATTGAGAGTGAATTTATGATTATTGTGGGGCCATTGTGGCAAACTTTTACGACTTCTCTTGAAGTATATGTGCGATCGTCAATTGAAGGTGCAGAAGATTCATACGATGGAAGATATGATTCAGATGGTGCTGATAAAAGCCTAGATTCCTTTGTCATCCAGTTATTTGAGTTTCTGTTGACTATCGTGGGTAATGCAGAATTGGTAAAGGTCATCACGAATAATGTCAGGGAGTTGGTGTATTACACTATTGCTTTTCTGCAAATAACGGAACAACAGGTTCATACTTGGTCAATGGATGCCAACCAATTTGTAGCTGATGAGGATGATTCTACTTATAGCTGTCGCGTTTCTGGTTCACTTCTACTTGAAGAAGTGGTGAATACGTGTGGTACAGAAGGAATCGGTGCCATCATTGATGCTGCAAAAACACGTTTAAGCGAATCTCAAAGAGAGAAGCTTGCTGGTTCTGCCATTTGGTGGAGAATGAGAGAGGCTACTCTGTTTGCTTTGACTTCTCTATCAGAACTATTGCTTGAAGCAGAGGATTCAGGATTGACAAGAGTTGGCTTAGGAAACCTTCTGGAGCAGATAATCAGTGAAGACATTGGATTAGATGTTCATGAATATCCCTTTCTTTATTCTCGCATGTTTTCGTCAGTTGCTAAGTTCTCCTCCGTGATCAGTCATGGAGTTCTTGAGCACTTTCTCTATGCTGCTACTAAAGCAATTGCCATGGATGTGCCCCCGCCTGTCAAAGTAGGTGCCTGCAGGGCACTTTCCCAGCTCCTACCTAAAGCAAACAAAGGATTAATTCAACCACATATAATGAGTTTGTTTACATCACTTTCAGATCTTCTTAATCAGGCGTCTGATGAAACCTTGAACCTGGTACTTGAAACACTGCTAGCGGCAATTGAGGCAGGTTATGAATTATCGGCATCAATAGAGCCTATCATTTCCCCTGTGATCCTTAACATGTGGGCGTCACATATTTCTGATCCTTTTGTCAGTATGGATTCAATTGAAGTTCTGGAGGCACTCAAAAATGCTCCTGGCTGTATACATCCACTGGTTTCCCGAGTTTTACCATATGTTTCGCCAGTCTTGAATAAACCCCAACAGCAGCCTGATGGATTAGTGGCTGGATCAGTGGATCTGGTGACGATGCTATTGAAAAATGCTCCCGGCGATGTGGTGAAAGCAGTATATGATGCTTGTTTTGATGGTGTTATCCAAATTGTCCTACGAAGTGATGATCATAGTGAAATGCAGAATGCAACAGAATGTTTAGCTGCTTTTATAGCTAGTGGAAGACAAGATGTGCTTGCTTGGGGTGGTGATTCTGGAAATACAATGAGAAGGTTGCTTGATGCAGCTTCAAGGCTTCTGGACCCTGAATTGGAAAGCTCTGGTTCTCTTTTTGTTGGGAGCTACATTCTGCAACTTATTTTGCATCTTCCATCACAAATGGCACCCCATATTCGAGACCTGGTTGTTGCTCTTCTTAGGCGCATGCAATCTGCCCAAATAGTAGGACTGAGAAGCTCTCTCCTACTCATATTTGCTCGACTGGTACACTTTAGTGCCCCAAATGTTGAACAGTTTATTGATCTGCTGGTCTCCATTCCAACTGATGGCTATGATAACTCCTTTGTATATTTAATGTCAGAATGGACCAAACAGCAAGGTGAGATTCAGGGGGCCTACCAAATTAAAGTCACTACTACTGCTTTGGCCGTATTGCTCTCATCTAGGCATCCTGAATTAGCAAAAATCAATGTGCAAGGAGTTTTAGTTCAGTCTGCTGCTGGGATAACGACTCGTTCAAAAGCTAAATTAACTCCTGATCAATGGACAGTGGTGCCACTTCCTGCAAAGATAATGGCTTTGTTGGTAGATGCATTGGTTGAAATCCAAGAACAGGTTTTAGCTAGTGATAATGAGGATAGTGACTGGGAAGAAGTTGAGGCAGATGGCGGGGAAGCTGATAAGGACTTGATGCATGCAGCAGGTGTAACGTCTTTTGGCCAACCCACACATGAACATCTTGAAGCAATTGCAAAAGTATTTAATAAGGATGAAGAAGAGGATGGGTATGAAGATGATAATTTAAGTGTGGCTGATCCCCTTAACCAGATTAATTTGGCAAATTATCTTGCCGAGTTTTTTGTAAATTTTTGTCAGAGGGAAAGACAACTGTTTGATCATCTTTGCCAGAGTCTGACACAGAATCAAAGGAATGCTATTCAGAAGGTCAAAACTGTCTGA

Protein Analysis

1036

Amino Acids

114.43

Weight (kDa)

4.67

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 33 - 110 8.3e-11 Importin-beta N-terminal domain
HEAT_IPO9_c PF25018 354 - 590 2.2e-11 Importin-9 central HEAT repeats
TPR_IPO11 PF25758 640 - 1002 1.5e-11 Importin-11-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26170
fragaria_vesca FvH4_4g28521 FvH4_4g28521
malus_domestica MD16G1051700.v1.1
prunus_persica Prupe.1G300500_v2.0.a1
pyrus_communis pycom16g04540
rosa_chinensis RchiOBHm_Chr4g0436541
rosa_laevigata RLG00000006510
rosa_roxburghii Rroxscaffold_5G00377650
rosa_rugosa Rorug04G0294700
rosa_samantha Rh4AG349000 Rh4BG357600 Rh4CG372000 Rh4DG351600
rosa_wichuraiana Rw4G030530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2843
Acc16I TGCGCA 1 cut(s) 314
Acc36I ACCTGC 3 cut(s) 383, 1754, 2843
AccB1I GGYRCC 4 cut(s) 1247, 1604, 2314, 2704
AccB7I CCANNNNNTGG 3 cut(s) 137, 1320, 2477
AccI GTMKAC 1 cut(s) 1903
AccII CGCG 1 cut(s) 1188
AciI CCGC 4 cut(s) 60, 1589, 1751, 2820
AclWI GGATC 7 cut(s) 335, 761, 1804, 1835, 1996, 2004, 2960
AcoI YGGCCR 4 cut(s) 404, 416, 2577, 2869
AcsI RAATTY 3 cut(s) 826, 851, 3016
AcyI GRCGYC 2 cut(s) 1709, 1826
AfaI GTAC 4 cut(s) 361, 1234, 1734, 2418
AfeI AGCGCT 1 cut(s) 486
AfiI CCNNNNNNNGG 6 cut(s) 137, 654, 1320, 2242, 2477, 2764
AflIII ACRYGT 3 cut(s) 1226, 1271, 1818
AjnI CCWGG 4 cut(s) 130, 1728, 1894, 2331
AleI CACNNNNGTG 1 cut(s) 2424
AloI GAACNNNNNNTCC 4 cut(s) 1443, 1475, 2622, 2654
Alw21I GWGCWC 3 cut(s) 177, 480, 1545
Alw26I GTCTC 2 cut(s) 2322, 2467
Alw44I GTGCAC 1 cut(s) 476
AlwI GGATC 7 cut(s) 335, 761, 1804, 1835, 1996, 2004, 2960
AlwNI CAGNNNCTG 1 cut(s) 3064
Ama87I CYCGRG 1 cut(s) 1920
Aor51HI AGCGCT 1 cut(s) 486
AoxI GGCC 6 cut(s) 404, 416, 869, 2544, 2577, 2869
ApaLI GTGCAC 1 cut(s) 476
ApoI RAATTY 3 cut(s) 826, 851, 3016
AseI ATTAAT 3 cut(s) 695, 1652, 2982
AspLEI GCGC 4 cut(s) 192, 315, 487, 2355
AspS9I GGNCC 5 cut(s) 532, 869, 2233, 2517, 2544
AsuC2I CCSGG 1 cut(s) 2028
AsuHPI GGTGA 6 cut(s) 670, 1231, 2014, 2050, 2192, 2543
AsuNHI GCTAGC 1 cut(s) 1747
AvaI CYCGRG 1 cut(s) 1920
AvaII GGWCC 3 cut(s) 532, 2233, 2517
AxyI CCTNAGG 1 cut(s) 588
BaeGI GKGCMC 4 cut(s) 480, 1587, 1618, 2431
BaeI ACNNNNGTAYC 4 cut(s) 516, 549, 561, 594
BalI TGGCCA 2 cut(s) 406, 2871
BanI GGYRCC 4 cut(s) 1247, 1604, 2314, 2704
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 1449, 2161
Bbv12I GWGCWC 3 cut(s) 177, 480, 1545
BccI CCATC 9 cut(s) 941, 959, 1259, 1967, 2060, 2311, 2471, 2810, 2927
BceAI ACGGC 2 cut(s) 632, 2564
BciT130I CCWGG 4 cut(s) 132, 1730, 1896, 2333
BclI TGATCA 4 cut(s) 1521, 2098, 2689, 3046
BcnI CCSGG 1 cut(s) 2028
BcoDI GTCTC 2 cut(s) 2322, 2467
BfaI CTAG 6 cut(s) 182, 983, 1748, 2148, 2595, 2775
BfmI CTRYAG 2 cut(s) 378, 1609
BfoI RGCGCY 1 cut(s) 488
BfuAI ACCTGC 3 cut(s) 383, 1754, 2843
BglI GCCNNNNNGGC 2 cut(s) 877, 1613
BglII AGATCT 1 cut(s) 1693
Bme1390I CCNGG 5 cut(s) 132, 1730, 1896, 2028, 2333
Bme18I GGWCC 3 cut(s) 532, 2233, 2517
BmeT110I CYCGRG 1 cut(s) 1920
BmgT120I GGNCC 5 cut(s) 532, 869, 2233, 2517, 2544
BmiI GGNNCC 8 cut(s) 534, 870, 1249, 1606, 2235, 2316, 2545, 2706
BmrFI CCNGG 5 cut(s) 132, 1730, 1896, 2028, 2333
BmrI ACTGGG 1 cut(s) 2806
BmtI GCTAGC 1 cut(s) 1751
BmuI ACTGGG 1 cut(s) 2806
BpiI GAAGAC 2 cut(s) 1449, 2161
BplI GAGNNNNNCTC 4 cut(s) 74, 106, 2374, 2406
BpmI CTGGAG 2 cut(s) 1445, 1895
Bpu10I CCTNAGC 1 cut(s) 1411
BpuEI CTTGAG 1 cut(s) 1559
BpuMI CCSGG 1 cut(s) 2028
BsaAI YACGTR 1 cut(s) 1227
BsaBI GATNNNNATC 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 1709, 1826
BsaI GGTCTC 2 cut(s) 2322, 2467
BsaJI CCNNGG 3 cut(s) 153, 716, 1575
BsaXI ACNNNNNCTCC 4 cut(s) 1064, 1094, 2622, 2652
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 654, 1320, 2242, 2477, 2764
Bse1I ACTGG 7 cut(s) 254, 752, 1000, 1917, 1943, 2418, 2801
Bse21I CCTNAGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 4 cut(s) 132, 1730, 1896, 2333
BseDI CCNNGG 3 cut(s) 153, 716, 1575
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 6 cut(s) 137, 654, 1320, 2242, 2477, 2764
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 3 cut(s) 602, 734, 2372
BseNI ACTGG 7 cut(s) 254, 752, 1000, 1917, 1943, 2418, 2801
BseRI GAGGAG 2 cut(s) 576, 1504
BseSI GKGCMC 4 cut(s) 480, 1587, 1618, 2431
BseYI CCCAGC 2 cut(s) 1623, 2651
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 1 cut(s) 1188
Bsh1285I CGRYCG 1 cut(s) 917
BshFI GGCC 6 cut(s) 406, 418, 871, 2546, 2579, 2871
BshNI GGYRCC 4 cut(s) 1247, 1604, 2314, 2704
BsiEI CGRYCG 1 cut(s) 917
BsiHKAI GWGCWC 3 cut(s) 177, 480, 1545
BsiHKCI CYCGRG 1 cut(s) 1920
BsiSI CCGG 2 cut(s) 419, 2028
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 6 cut(s) 137, 654, 1320, 2242, 2477, 2764
BsmAI GTCTC 2 cut(s) 2322, 2467
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 2 cut(s) 2122, 3088
BsnI GGCC 6 cut(s) 406, 418, 871, 2546, 2579, 2871
Bso31I GGTCTC 2 cut(s) 2322, 2467
BsoBI CYCGRG 1 cut(s) 1920
Bsp1286I GDGCHC 6 cut(s) 177, 480, 1545, 1587, 1618, 2431
Bsp1407I TGTACA 1 cut(s) 359
Bsp19I CCATGG 2 cut(s) 716, 1575
BspACI CCGC 4 cut(s) 60, 1589, 1751, 2820
BspANI GGCC 6 cut(s) 406, 418, 871, 2546, 2579, 2871
BspCNI CTCAG 3 cut(s) 601, 735, 2373
BspFNI CGCG 1 cut(s) 1188
BspHI TCATGA 1 cut(s) 1462
BspLI GGNNCC 8 cut(s) 534, 870, 1249, 1606, 2235, 2316, 2545, 2706
BspMAI CTGCAG 1 cut(s) 1613
BspMI ACCTGC 3 cut(s) 383, 1754, 2843
BspOI GCTAGC 1 cut(s) 1751
BspPI GGATC 7 cut(s) 335, 761, 1804, 1835, 1996, 2004, 2960
BspQI GCTCTTC 2 cut(s) 507, 2349
BspT107I GGYRCC 4 cut(s) 1247, 1604, 2314, 2704
BspTNI GGTCTC 2 cut(s) 2322, 2467
BsrDI GCAATG 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 359
BsrI ACTGG 7 cut(s) 254, 752, 1000, 1917, 1943, 2418, 2801
BssECI CCNNGG 3 cut(s) 153, 716, 1575
BssNAI GTATAC 1 cut(s) 1904
BssNI GRCGYC 2 cut(s) 1709, 1826
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 3 cut(s) 153, 716, 1575
Bst1107I GTATAC 1 cut(s) 1904
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 4 cut(s) 132, 1730, 1896, 2333
Bst4CI ACNGT 5 cut(s) 529, 2445, 2701, 3042, 3106
Bst6I CTCTTC 3 cut(s) 507, 2349, 2922
BstACI GRCGYC 2 cut(s) 1709, 1826
BstAPI GCANNNNNTGC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 1227
BstC8I GCNNGC 6 cut(s) 1302, 1609, 1749, 2169, 2357, 2847
BstDEI CTNAG 7 cut(s) 488, 588, 743, 1411, 1506, 2348, 2381
BstDSI CCRYGG 2 cut(s) 716, 1575
BstFNI CGCG 1 cut(s) 1188
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 4 cut(s) 192, 315, 487, 2355
BstMAI GTCTC 2 cut(s) 2322, 2467
BstMCI CGRYCG 1 cut(s) 917
BstNI CCWGG 4 cut(s) 132, 1730, 1896, 2333
BstNSI RCATGY 4 cut(s) 1492, 1822, 2359, 2849
BstSCI CCNGG 5 cut(s) 130, 1728, 1894, 2026, 2331
BstSFI CTRYAG 2 cut(s) 378, 1609
BstSLI GKGCMC 4 cut(s) 480, 1587, 1618, 2431
BstUI CGCG 1 cut(s) 1188
BstV2I GAAGAC 2 cut(s) 1449, 2161
BstX2I RGATCY 3 cut(s) 766, 1693, 1996
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 3 cut(s) 766, 1693, 1996
BstZ17I GTATAC 1 cut(s) 1904
Bsu36I CCTNAGG 1 cut(s) 588
BsuRI GGCC 6 cut(s) 406, 418, 871, 2546, 2579, 2871
BtgI CCRYGG 2 cut(s) 716, 1575
BtgZI GCGATG 2 cut(s) 276, 2046
BtsI GCAGTG 2 cut(s) 687, 1742
BtsIMutI CAGTG 8 cut(s) 247, 687, 759, 1444, 1742, 1910, 1998, 2706
BveI ACCTGC 3 cut(s) 383, 1754, 2843
Cac8I GCNNGC 6 cut(s) 1302, 1609, 1749, 2169, 2357, 2847
CaiI CAGNNNCTG 1 cut(s) 3064
CciI TCATGA 1 cut(s) 1462
CfoI GCGC 4 cut(s) 192, 315, 487, 2355
Cfr13I GGNCC 5 cut(s) 532, 869, 2233, 2517, 2544
CseI GACGC 3 cut(s) 547, 1698, 1815
CsiI ACCWGGT 3 cut(s) 130, 1728, 2331
Csp6I GTAC 4 cut(s) 360, 1233, 1733, 2417
CviQI GTAC 4 cut(s) 360, 1233, 1733, 2417
DdeI CTNAG 7 cut(s) 488, 588, 743, 1411, 1506, 2348, 2381
EaeI YGGCCR 4 cut(s) 404, 416, 2577, 2869
Eam1104I CTCTTC 3 cut(s) 507, 2349, 2922
EarI CTCTTC 3 cut(s) 507, 2349, 2922
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 3 cut(s) 153, 716, 1575
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 2 cut(s) 2322, 2467
Eco32I GATATC 1 cut(s) 198
Eco47I GGWCC 3 cut(s) 532, 2233, 2517
Eco47III AGCGCT 1 cut(s) 486
Eco53kI GAGCTC 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 1920
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 2544
EcoRII CCWGG 4 cut(s) 130, 1728, 1894, 2331
EcoRV GATATC 1 cut(s) 198
EcoT14I CCWWGG 3 cut(s) 153, 716, 1575
EcoT22I ATGCAT 2 cut(s) 2746, 2847
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 3 cut(s) 153, 716, 1575
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 2151, 2183
FaqI GGGAC 1 cut(s) 518
FauI CCCGC 2 cut(s) 1596, 2813
FauNDI CATATG 1 cut(s) 1933
FbaI TGATCA 4 cut(s) 1521, 2098, 2689, 3046
FblI GTMKAC 1 cut(s) 1903
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 6 cut(s) 182, 983, 1748, 2148, 2595, 2775
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 4 cut(s) 191, 314, 486, 2354
GsaI CCCAGC 2 cut(s) 1627, 2655
GsuI CTGGAG 2 cut(s) 1445, 1895
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 6 cut(s) 406, 418, 871, 2546, 2579, 2871
HapII CCGG 2 cut(s) 419, 2028
HgaI GACGC 3 cut(s) 547, 1698, 1815
HhaI GCGC 4 cut(s) 192, 315, 487, 2355
Hin1I GRCGYC 2 cut(s) 1709, 1826
Hin6I GCGC 4 cut(s) 190, 313, 485, 2353
HinP1I GCGC 4 cut(s) 190, 313, 485, 2353
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HindIII AAGCTT 1 cut(s) 1298
HpaII CCGG 2 cut(s) 419, 2028
HphI GGTGA 6 cut(s) 670, 1231, 2014, 2050, 2192, 2543
Hpy166II GTNNAC 7 cut(s) 478, 514, 1020, 1199, 1680, 1904, 2419
Hpy8I GTNNAC 7 cut(s) 478, 514, 1020, 1199, 1680, 1904, 2419
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 8 cut(s) 233, 251, 295, 920, 1232, 1430, 2196, 3088
HpyCH4III ACNGT 5 cut(s) 529, 2445, 2701, 3042, 3106
HpyCH4IV ACGT 3 cut(s) 1226, 1273, 2861
HpyF3I CTNAG 7 cut(s) 488, 588, 743, 1411, 1506, 2348, 2381
HpySE526I ACGT 3 cut(s) 1226, 1273, 2861
Hsp92I GRCGYC 2 cut(s) 1709, 1826
HspAI GCGC 4 cut(s) 190, 313, 485, 2353
Ksp22I TGATCA 4 cut(s) 1521, 2098, 2689, 3046
LguI GCTCTTC 2 cut(s) 507, 2349
LmnI GCTCC 8 cut(s) 172, 482, 780, 1426, 1632, 1897, 2029, 2271
MabI ACCWGGT 3 cut(s) 130, 1728, 2331
MaeI CTAG 6 cut(s) 182, 983, 1748, 2148, 2595, 2775
MaeII ACGT 3 cut(s) 1226, 1273, 2861
MaeIII GTNAC 5 cut(s) 1827, 2002, 2560, 2792, 2857
MfeI CAATTG 8 cut(s) 49, 573, 627, 921, 1569, 1755, 1863, 2898
MflI RGATCY 3 cut(s) 766, 1693, 1996
MhlI GDGCHC 6 cut(s) 177, 480, 1545, 1587, 1618, 2431
MlsI TGGCCA 2 cut(s) 406, 2871
MluNI TGGCCA 2 cut(s) 406, 2871
MlyI GAGTC 3 cut(s) 754, 2656, 3070
MmeI TCCRAC 1 cut(s) 2495
Mox20I TGGCCA 2 cut(s) 406, 2871
Mph1103I ATGCAT 2 cut(s) 2746, 2847
MscI TGGCCA 2 cut(s) 406, 2871
MslI CAYNNNNRTG 3 cut(s) 788, 1580, 2424
Msp20I TGGCCA 2 cut(s) 406, 2871
MspI CCGG 2 cut(s) 419, 2028
MspR9I CCNGG 5 cut(s) 132, 1730, 1896, 2028, 2333
MunI CAATTG 8 cut(s) 49, 573, 627, 921, 1569, 1755, 1863, 2898
Mva1269I GAATGC 2 cut(s) 2122, 3088
MvaI CCWGG 4 cut(s) 132, 1730, 1896, 2333
MvnI CGCG 1 cut(s) 1188
NciI CCSGG 1 cut(s) 2028
NcoI CCATGG 2 cut(s) 716, 1575
NdeI CATATG 1 cut(s) 1933
NheI GCTAGC 1 cut(s) 1747
NlaIV GGNNCC 8 cut(s) 534, 870, 1249, 1606, 2235, 2316, 2545, 2706
NmeAIII GCCGAG 1 cut(s) 3028
NmuCI GTSAC 4 cut(s) 1827, 2002, 2560, 2792
NsbI TGCGCA 1 cut(s) 314
NsiI ATGCAT 2 cut(s) 2746, 2847
NspI RCATGY 4 cut(s) 1492, 1822, 2359, 2849
OliI CACNNNNGTG 1 cut(s) 2424
PaeI GCATGC 2 cut(s) 2359, 2849
PagI TCATGA 1 cut(s) 1462
PaqCI CACCTGC 1 cut(s) 2843
PciI ACATGT 1 cut(s) 1818
PciSI GCTCTTC 2 cut(s) 507, 2349
PctI GAATGC 2 cut(s) 2122, 3088
PflMI CCANNNNNTGG 3 cut(s) 137, 1320, 2477
Ple19I CGATCG 1 cut(s) 917
PleI GAGTC 3 cut(s) 753, 2656, 3069
PpsI GAGTC 3 cut(s) 753, 2656, 3069
Ppu21I YACGTR 1 cut(s) 1227
PscI ACATGT 1 cut(s) 1818
PshBI ATTAAT 3 cut(s) 695, 1652, 2982
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 4 cut(s) 130, 1728, 1894, 2331
PspFI CCCAGC 2 cut(s) 1623, 2651
PspGI CCWGG 4 cut(s) 130, 1728, 1894, 2331
PspN4I GGNNCC 8 cut(s) 534, 870, 1249, 1606, 2235, 2316, 2545, 2706
PspPI GGNCC 5 cut(s) 532, 869, 2233, 2517, 2544
PstI CTGCAG 1 cut(s) 1613
PstNI CAGNNNCTG 1 cut(s) 3064
PsuI RGATCY 3 cut(s) 766, 1693, 1996
PvuI CGATCG 1 cut(s) 917
RsaI GTAC 4 cut(s) 361, 1234, 1734, 2418
RsaNI GTAC 4 cut(s) 360, 1233, 1733, 2417
RseI CAYNNNNRTG 3 cut(s) 788, 1580, 2424
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 2 cut(s) 507, 2349
Sau96I GGNCC 5 cut(s) 532, 869, 2233, 2517, 2544
SbfI CCTGCAGG 1 cut(s) 1613
SchI GAGTC 3 cut(s) 754, 2656, 3070
ScrFI CCNGG 5 cut(s) 132, 1730, 1896, 2028, 2333
SdaI CCTGCAGG 1 cut(s) 1613
SduI GDGCHC 6 cut(s) 177, 480, 1545, 1587, 1618, 2431
SexAI ACCWGGT 3 cut(s) 130, 1728, 2331
SfcI CTRYAG 2 cut(s) 378, 1609
SinI GGWCC 3 cut(s) 532, 2233, 2517
SmiMI CAYNNNNRTG 3 cut(s) 788, 1580, 2424
SmlI CTYRAG 1 cut(s) 1538
SmoI CTYRAG 1 cut(s) 1538
SphI GCATGC 2 cut(s) 2359, 2849
Sse8387I CCTGCAGG 1 cut(s) 1613
SsiI CCGC 4 cut(s) 60, 1589, 1751, 2820
SspI AATATT 1 cut(s) 605
SspMI CTAG 6 cut(s) 182, 983, 1748, 2148, 2595, 2775
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 5 cut(s) 130, 1728, 1894, 2026, 2331
StyI CCWWGG 3 cut(s) 153, 716, 1575
TaaI ACNGT 5 cut(s) 529, 2445, 2701, 3042, 3106
TaiI ACGT 3 cut(s) 1229, 1276, 2864
TaqI TCGA 4 cut(s) 24, 69, 2326, 2410
TatI WGTACW 1 cut(s) 359
TauI GCSGC 1 cut(s) 1754
TscAI CASTG 8 cut(s) 254, 694, 759, 1444, 1749, 1917, 1998, 2706
TseFI GTSAC 4 cut(s) 1827, 2002, 2560, 2792
Tsp45I GTSAC 4 cut(s) 1827, 2002, 2560, 2792
TspGWI ACGGA 4 cut(s) 495, 695, 1124, 1507
TspRI CASTG 8 cut(s) 254, 694, 759, 1444, 1749, 1917, 1998, 2706
Van91I CCANNNNNTGG 3 cut(s) 137, 1320, 2477
VneI GTGCAC 1 cut(s) 476
VpaK11BI GGWCC 3 cut(s) 532, 2233, 2517
VspI ATTAAT 3 cut(s) 695, 1652, 2982
XapI RAATTY 3 cut(s) 826, 851, 3016
XceI RCATGY 4 cut(s) 1492, 1822, 2359, 2849
XmiI GTMKAC 1 cut(s) 1903
XspI CTAG 6 cut(s) 182, 983, 1748, 2148, 2595, 2775
Zsp2I ATGCAT 2 cut(s) 2746, 2847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.