Rh4AG349000

Importin-9

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
65731269 .. 65741819
10551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG349000.1

Sequence Viewer

Length: 3096 bp
ATGGCGAACCTCAACATCGTTCTCGATGAAGATCAGCAATGGCTGCTCAATTGCTTGTCCGCTACTCTCGACCCCAACCACGAGGTCCGCTCTTTCGCCGAAGCCTCGCTTAATCAGGCTTCTCTGCAACCAGGTTTTGGAAGTGCGTTATCCAAGGTTGCTGCAAATAGGGAGCTCTCGCTAGGGTTGCGCCAGCTAGCTGCTGTCCTTCTAAAGCAGTTTATTAAAAAACACTGGAACGAAGGCGATGAAGCATTTGAACACCCTGCTGTTTCAAGTGATGAGAAGGTGGTTGTGCGCAAACTTCTTTTGTTTTCATTAGATGATCCTCATAGGAAAATCTGTACAGCAATTAGTATGGCTGTAGCATCAATAGCAGGTTATGATTGGCCAGAAGATTGGCCGGACTTATTACCATATCTAATGAAGTTGATTAACAACCAAACCAATATGAATGGAGTGCACGGAGCTCTTAGATGCTTGGCTCTTCTCTCTGTGGACTTGGATGATACTGTGGTCCCGACGCTAATTCCCGCTTTGTTCCCATGCTTACTTACAATTGTATCATCTCCTCAGGTGTATGACAAATATTTACGCACAAAATCCTATTCAATTGTTTATTCATGTATTGCCGTGTTGGGGGTGATGAGTGGTGTATATAAGACGGAAACCACTGCATTAATAGCACCTATGCTAAAACCATGGATGAATCAATTTTCATCAATCCTGAGTCATCCAGTGCAATCCGAAGATCCTGATGATTGGAGCATAAGAATGGAGGTATTGAAGTGCTTGAATCAGTTCGTTCAAAATTTCCCAAGCCTTATTGAGAGTGAATTTATGATTATTGTGGGGCCATTGTGGCAAACTTTTACGACTTCTCTTGAAGTATATGTGCGATCGTCAATTGAAGGTGCAGAAGATTCATACGATGGAAGATATGATTCAGATGGTGCTGATAAAAGCCTAGATTCCTTTGTCATCCAGTTATTTGAGTTTCTGTTGACTATCGTGGGTAATGCAGAATTGGTAAAGGTCATCACGAATAATGTCAAGGAGTTGGCGTATTACACTATTGCTTTTCTGCAAATAACGGAACAACAGGTTCATACTTGGTCAATGGATGCCAACCAATTTGTAGCTGATGAGGATGATTCTACTTATAGCTGTCGTGTTTCGGGTTCACTTCTACTTGAAGAAGTGGTGAATACGTGTGGTACAGAAGGAATCGGTGCCATCATTGATGCTGCAAAAACACGTTTAAGTGAATCTCAAAGAGAGAAGCATACTGGTTCTGCCATTTGGTGGAGAATGAGAGAGGCTACTCTGTTTGCTTTGACTTCTCTATCAGAACTATTGCTTGAAGCAGAGGATTCAGGATTGACAAGAGTTGGCTTAGGAAACCTTCTAGAGCAGATAATCAGTGAAGACATTGGATTAGATGTTCATGAATATCCCTTTCTTTATTCTCGCATGTTTTCATCGGTTGCTAAGTTCTCCTCTGTGATCAGTCATGGAGTTCTTGAGCACTTTCTCTATGCTGCTACTAAAGCAATTGCCATGGATGTGCCCCCGCCTGTCAAAGTAGGTGCCTGCAGGGCACTTTCCCAGCTCCTACCTAAAGCAAACAAAGGATTAATTCAACCACATATAATGAGTTTGTTTACATCACTTTCAGATCTTCTTAATCAGGCGTCTGATGAAACCTTGAACCTGGTACTTGAAACACTGCTAGCGGCAATTGAGGCAGGTTATGAATTATCGGCATCAATAGAGCCTATCATTTCCCCTGTGATCCTTAACATGTGGGCGTCACATATTTCTGATCCTTTTGTCAGTATGGATTCAATTGAAGTTCTGGAGGCACTCAAAAATGCTCCTGGCTGTATACATCCACTGGTTTCCCGAGTTTTACCGTATGTTTCGCCAGTCTTGAATAAACCCCAACAGCAGCCTGATGGATTAGTGGCTGGATCAGTGGATCTGGTGACGATGCTATTGAAAAATGCTCCCGGCGATGTGGTGAAAGCAGTATATGATGCTTGTTTTGATGGTGTTATCCAAATTGTCCTACGAAGTGACGATCATAGTGAAATGCAGAATGCAACAGAATGTTTAGCTGCTTTTATAGCTAGTGGAAGACAAGATGTGCTTGCTTGGGGTGGTGATTCTGGAAATACAATGAGAAGGTTGCTTGATGCAGCTTCAAGACTTCTGGACCCTAAATTGGAAAGCTCTGGTTCTCTTTTTGTTGGGTGCTACATTCTGCAACTTATTTTGCATCTTCCATCACAAATGGCACCCCATATTCGAGACCTGGTTGTTGCTCTTCTTAGGCGCATGCAGTCTGCCCAAATAGTAGGACTGAGAAGCTCTCTCCTACTCATATTTGCTCGACTGGTACACTTTAGTGCCCCAAATGTTGAACAGTTTATTGATCTGCTGGTCTCCATTCCAACTGATGGCTATGATAACTCTTTTGTATATTTAATGTCAGAATGGACCAAACAGCAAGGTGAGATTCAGGGGGCCTACCAAATTAAAGTCACTACTACTGCTTTGGCCTTATTGCTCTCATCTAGGCATCCTGAATTAGCAAAAATCAATGTGCAAGGAGTTTTAGTTCAGTCTGCTGCTGGGATAACGACTCGTTCAAAAGCTAAATTAACTCCTGATCAGTGGACAGTGGTGCCACTTCCTGCAAAGATAATGGCTTTGTTGGTAGATGCATTGGTTGAAATCCAAGAACAGGTTTTAGCTAGTGATAATGAGGATAGTGACTGGGAAGAAGTTGAGGCAGATGGTGGGGAAGCTGATAAGGACTTGATGCATGCAGCAGGTGTAACGTCTTTTGGCCAAACCACACATGAACATCTTGAAGCAATTGCAAAAGTATTTAATAAGGATGAAGAAGAGGATGGGTATGAAGATGATAATTTAAGTGTGGTCGATCCCCTTAACCAGATTAATTTGGCAACTTATCTTGCCGAGTTTTTTGTAAATTTTTGTCAGAGGGAAAGACAACTGTTTGATCATCTTTGCCAGAGTCTGACACAGAATCAAAGGAATGCTATTCAGAAGATCAAAACTGTCTGA

Protein Analysis

1031

Amino Acids

113.81

Weight (kDa)

4.71

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 33 - 105 1e-14 Importin-beta N-terminal domain
HEAT_IPO9_c PF25018 350 - 585 4.4e-11 Importin-9 central HEAT repeats
TPR_IPO11 PF25758 635 - 997 1e-10 Importin-11-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26170
fragaria_vesca FvH4_4g28521 FvH4_4g28521
malus_domestica MD16G1051700.v1.1
prunus_persica Prupe.1G300500_v2.0.a1
pyrus_communis pycom16g04540
rosa_chinensis RchiOBHm_Chr4g0436541
rosa_laevigata RLG00000006510
rosa_roxburghii Rroxscaffold_5G00377650
rosa_rugosa Rorug04G0294700
rosa_samantha Rh4AG349000 Rh4BG357600 Rh4CG372000 Rh4DG351600
rosa_wichuraiana Rw4G030530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2828
Acc16I TGCGCA 1 cut(s) 299
Acc36I ACCTGC 3 cut(s) 368, 1739, 2828
AccB1I GGYRCC 4 cut(s) 1232, 1589, 2299, 2689
AccB7I CCANNNNNTGG 3 cut(s) 137, 1305, 2462
AccBSI CCGCTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 1888
AciI CCGC 5 cut(s) 60, 88, 534, 1574, 1736
AclWI GGATC 7 cut(s) 320, 746, 1789, 1820, 1981, 1989, 2945
AcoI YGGCCR 3 cut(s) 389, 401, 2854
AcsI RAATTY 3 cut(s) 811, 836, 3001
AcyI GRCGYC 2 cut(s) 1694, 1811
AfaI GTAC 4 cut(s) 346, 1219, 1719, 2403
AfiI CCNNNNNNNGG 6 cut(s) 137, 639, 1305, 2227, 2462, 2749
AflIII ACRYGT 3 cut(s) 1211, 1256, 1803
AjnI CCWGG 4 cut(s) 130, 1713, 1879, 2316
AleI CACNNNNGTG 1 cut(s) 2409
AloI GAACNNNNNNTCC 4 cut(s) 1428, 1460, 2607, 2639
Alw21I GWGCWC 4 cut(s) 177, 465, 472, 1530
Alw26I GTCTC 2 cut(s) 2307, 2452
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 7 cut(s) 320, 746, 1789, 1820, 1981, 1989, 2945
AlwNI CAGNNNCTG 1 cut(s) 3049
Ama87I CYCGRG 1 cut(s) 1905
AoxI GGCC 6 cut(s) 389, 401, 854, 2529, 2562, 2854
ApaLI GTGCAC 1 cut(s) 461
ApoI RAATTY 3 cut(s) 811, 836, 3001
AseI ATTAAT 3 cut(s) 680, 1637, 2967
Asp700I GAANNNNTTC 1 cut(s) 800
AspLEI GCGC 3 cut(s) 192, 300, 2340
AspS9I GGNCC 6 cut(s) 85, 517, 854, 2218, 2502, 2529
AsuC2I CCSGG 1 cut(s) 2013
AsuHPI GGTGA 6 cut(s) 655, 1216, 1999, 2035, 2177, 2528
AsuNHI GCTAGC 2 cut(s) 196, 1732
AvaI CYCGRG 1 cut(s) 1905
AvaII GGWCC 4 cut(s) 85, 517, 2218, 2502
AxyI CCTNAGG 1 cut(s) 573
BaeGI GKGCMC 4 cut(s) 465, 1572, 1603, 2416
BaeI ACNNNNGTAYC 4 cut(s) 501, 534, 546, 579
BalI TGGCCA 2 cut(s) 391, 2856
BanI GGYRCC 4 cut(s) 1232, 1589, 2299, 2689
BanII GRGCYC 2 cut(s) 177, 472
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 1434, 2146
Bbv12I GWGCWC 4 cut(s) 177, 465, 472, 1530
BccI CCATC 9 cut(s) 926, 944, 1244, 1952, 2045, 2296, 2456, 2795, 2912
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 4 cut(s) 132, 1715, 1881, 2318
BclI TGATCA 3 cut(s) 1506, 2674, 3031
BcnI CCSGG 1 cut(s) 2013
BcoDI GTCTC 2 cut(s) 2307, 2452
BfaI CTAG 8 cut(s) 182, 197, 968, 1409, 1733, 2133, 2580, 2760
BfmI CTRYAG 2 cut(s) 363, 1594
BfuAI ACCTGC 3 cut(s) 368, 1739, 2828
BglI GCCNNNNNGGC 2 cut(s) 862, 1598
BglII AGATCT 1 cut(s) 1678
Bme1390I CCNGG 5 cut(s) 132, 1715, 1881, 2013, 2318
Bme18I GGWCC 4 cut(s) 85, 517, 2218, 2502
BmeT110I CYCGRG 1 cut(s) 1905
BmgT120I GGNCC 6 cut(s) 85, 517, 854, 2218, 2502, 2529
BmiI GGNNCC 8 cut(s) 519, 855, 1234, 1591, 2220, 2301, 2530, 2691
BmrFI CCNGG 5 cut(s) 132, 1715, 1881, 2013, 2318
BmrI ACTGGG 1 cut(s) 2791
BmtI GCTAGC 2 cut(s) 200, 1736
BmuI ACTGGG 1 cut(s) 2791
BpiI GAAGAC 2 cut(s) 1434, 2146
BplI GAGNNNNNCTC 4 cut(s) 74, 106, 2359, 2391
BpmI CTGGAG 1 cut(s) 1880
Bpu10I CCTNAGC 1 cut(s) 1396
BpuEI CTTGAG 1 cut(s) 1544
BpuMI CCSGG 1 cut(s) 2013
BsaAI YACGTR 1 cut(s) 1212
BsaBI GATNNNNATC 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 1694, 1811
BsaI GGTCTC 2 cut(s) 2307, 2452
BsaJI CCNNGG 3 cut(s) 153, 701, 1560
BsaXI ACNNNNNCTCC 4 cut(s) 1049, 1079, 2607, 2637
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 639, 1305, 2227, 2462, 2749
Bse1I ACTGG 8 cut(s) 239, 737, 985, 1294, 1902, 1928, 2403, 2786
Bse21I CCTNAGG 1 cut(s) 573
Bse3DI GCAATG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 4 cut(s) 132, 1715, 1881, 2318
BseDI CCNNGG 3 cut(s) 153, 701, 1560
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 6 cut(s) 137, 639, 1305, 2227, 2462, 2749
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 3 cut(s) 587, 719, 2357
BseNI ACTGG 8 cut(s) 239, 737, 985, 1294, 1902, 1928, 2403, 2786
BseRI GAGGAG 2 cut(s) 561, 1489
BseSI GKGCMC 4 cut(s) 465, 1572, 1603, 2416
BseYI CCCAGC 2 cut(s) 1608, 2636
BsgI GTGCAG 1 cut(s) 936
Bsh1285I CGRYCG 1 cut(s) 902
BshFI GGCC 6 cut(s) 391, 403, 856, 2531, 2564, 2856
BshNI GGYRCC 4 cut(s) 1232, 1589, 2299, 2689
BsiEI CGRYCG 1 cut(s) 902
BsiHKAI GWGCWC 4 cut(s) 177, 465, 472, 1530
BsiHKCI CYCGRG 1 cut(s) 1905
BsiSI CCGG 2 cut(s) 404, 2013
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 6 cut(s) 137, 639, 1305, 2227, 2462, 2749
BsmAI GTCTC 2 cut(s) 2307, 2452
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 2 cut(s) 2107, 3073
BsnI GGCC 6 cut(s) 391, 403, 856, 2531, 2564, 2856
Bso31I GGTCTC 2 cut(s) 2307, 2452
BsoBI CYCGRG 1 cut(s) 1905
Bsp1286I GDGCHC 7 cut(s) 177, 465, 472, 1530, 1572, 1603, 2416
Bsp1407I TGTACA 1 cut(s) 344
Bsp19I CCATGG 2 cut(s) 701, 1560
BspACI CCGC 5 cut(s) 60, 88, 534, 1574, 1736
BspANI GGCC 6 cut(s) 391, 403, 856, 2531, 2564, 2856
BspCNI CTCAG 3 cut(s) 586, 720, 2358
BspHI TCATGA 1 cut(s) 1447
BspLI GGNNCC 8 cut(s) 519, 855, 1234, 1591, 2220, 2301, 2530, 2691
BspMAI CTGCAG 1 cut(s) 1598
BspMI ACCTGC 3 cut(s) 368, 1739, 2828
BspOI GCTAGC 2 cut(s) 200, 1736
BspPI GGATC 7 cut(s) 320, 746, 1789, 1820, 1981, 1989, 2945
BspQI GCTCTTC 2 cut(s) 492, 2334
BspT107I GGYRCC 4 cut(s) 1232, 1589, 2299, 2689
BspTNI GGTCTC 2 cut(s) 2307, 2452
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 344
BsrI ACTGG 8 cut(s) 239, 737, 985, 1294, 1902, 1928, 2403, 2786
BssECI CCNNGG 3 cut(s) 153, 701, 1560
BssNAI GTATAC 1 cut(s) 1889
BssNI GRCGYC 2 cut(s) 1694, 1811
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 3 cut(s) 153, 701, 1560
Bst1107I GTATAC 1 cut(s) 1889
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 4 cut(s) 132, 1715, 1881, 2318
Bst4CI ACNGT 6 cut(s) 514, 1917, 2430, 2686, 3027, 3091
Bst6I CTCTTC 3 cut(s) 492, 2334, 2907
BstACI GRCGYC 2 cut(s) 1694, 1811
BstAPI GCANNNNNTGC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 1212
BstC8I GCNNGC 7 cut(s) 194, 198, 1594, 1734, 2154, 2342, 2832
BstDEI CTNAG 7 cut(s) 473, 573, 728, 1396, 1491, 2333, 2366
BstDSI CCRYGG 2 cut(s) 701, 1560
BstHHI GCGC 3 cut(s) 192, 300, 2340
BstMAI GTCTC 2 cut(s) 2307, 2452
BstMCI CGRYCG 1 cut(s) 902
BstMWI GCNNNNNNNGC 9 cut(s) 43, 187, 374, 683, 862, 1550, 1598, 1745, 2129
BstNI CCWGG 4 cut(s) 132, 1715, 1881, 2318
BstNSI RCATGY 4 cut(s) 1477, 1807, 2344, 2834
BstSCI CCNGG 5 cut(s) 130, 1713, 1879, 2011, 2316
BstSFI CTRYAG 2 cut(s) 363, 1594
BstSLI GKGCMC 4 cut(s) 465, 1572, 1603, 2416
BstV2I GAAGAC 2 cut(s) 1434, 2146
BstX2I RGATCY 3 cut(s) 751, 1678, 1981
BstXI CCANNNNNNTGG 1 cut(s) 399
BstYI RGATCY 3 cut(s) 751, 1678, 1981
BstZ17I GTATAC 1 cut(s) 1889
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 6 cut(s) 391, 403, 856, 2531, 2564, 2856
BtgI CCRYGG 2 cut(s) 701, 1560
BtgZI GCGATG 2 cut(s) 261, 2031
BtsI GCAGTG 2 cut(s) 672, 1727
BtsIMutI CAGTG 9 cut(s) 232, 672, 744, 1429, 1727, 1895, 1983, 2684, 2691
BveI ACCTGC 3 cut(s) 368, 1739, 2828
Cac8I GCNNGC 7 cut(s) 194, 198, 1594, 1734, 2154, 2342, 2832
CaiI CAGNNNCTG 1 cut(s) 3049
CciI TCATGA 1 cut(s) 1447
CfoI GCGC 3 cut(s) 192, 300, 2340
Cfr13I GGNCC 6 cut(s) 85, 517, 854, 2218, 2502, 2529
CseI GACGC 3 cut(s) 532, 1683, 1800
CsiI ACCWGGT 3 cut(s) 130, 1713, 2316
Csp6I GTAC 4 cut(s) 345, 1218, 1718, 2402
CviQI GTAC 4 cut(s) 345, 1218, 1718, 2402
DdeI CTNAG 7 cut(s) 473, 573, 728, 1396, 1491, 2333, 2366
EaeI YGGCCR 3 cut(s) 389, 401, 2854
Eam1104I CTCTTC 3 cut(s) 492, 2334, 2907
EarI CTCTTC 3 cut(s) 492, 2334, 2907
Ecl136II GAGCTC 2 cut(s) 175, 470
Eco130I CCWWGG 3 cut(s) 153, 701, 1560
Eco24I GRGCYC 2 cut(s) 177, 472
Eco31I GGTCTC 2 cut(s) 2307, 2452
Eco47I GGWCC 4 cut(s) 85, 517, 2218, 2502
Eco53kI GAGCTC 2 cut(s) 175, 470
Eco81I CCTNAGG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 1905
EcoICRI GAGCTC 2 cut(s) 175, 470
EcoO109I RGGNCCY 1 cut(s) 2529
EcoRII CCWGG 4 cut(s) 130, 1713, 1879, 2316
EcoT14I CCWWGG 3 cut(s) 153, 701, 1560
EcoT22I ATGCAT 2 cut(s) 2731, 2832
EcoT38I GRGCYC 2 cut(s) 177, 472
ErhI CCWWGG 3 cut(s) 153, 701, 1560
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 2136, 2168
FaqI GGGAC 1 cut(s) 503
FauI CCCGC 2 cut(s) 541, 1581
FbaI TGATCA 3 cut(s) 1506, 2674, 3031
FblI GTMKAC 1 cut(s) 1888
FriOI GRGCYC 2 cut(s) 177, 472
FspBI CTAG 8 cut(s) 182, 197, 968, 1409, 1733, 2133, 2580, 2760
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 3 cut(s) 191, 299, 2339
GsaI CCCAGC 2 cut(s) 1612, 2640
GsuI CTGGAG 1 cut(s) 1880
HaeIII GGCC 6 cut(s) 391, 403, 856, 2531, 2564, 2856
HapII CCGG 2 cut(s) 404, 2013
HgaI GACGC 3 cut(s) 532, 1683, 1800
HhaI GCGC 3 cut(s) 192, 300, 2340
Hin1I GRCGYC 2 cut(s) 1694, 1811
Hin6I GCGC 3 cut(s) 190, 298, 2338
HinP1I GCGC 3 cut(s) 190, 298, 2338
HincII GTYRAC 1 cut(s) 1005
HindII GTYRAC 1 cut(s) 1005
HpaII CCGG 2 cut(s) 404, 2013
HphI GGTGA 6 cut(s) 655, 1216, 1999, 2035, 2177, 2528
Hpy166II GTNNAC 8 cut(s) 463, 499, 1005, 1184, 1665, 1889, 2404, 2682
Hpy8I GTNNAC 8 cut(s) 463, 499, 1005, 1184, 1665, 1889, 2404, 2682
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 7 cut(s) 218, 236, 280, 905, 1217, 1415, 2181
HpyCH4III ACNGT 6 cut(s) 514, 1917, 2430, 2686, 3027, 3091
HpyCH4IV ACGT 3 cut(s) 1211, 1258, 2846
HpyF10VI GCNNNNNNNGC 9 cut(s) 43, 187, 374, 683, 862, 1550, 1598, 1745, 2129
HpyF3I CTNAG 7 cut(s) 473, 573, 728, 1396, 1491, 2333, 2366
HpySE526I ACGT 3 cut(s) 1211, 1258, 2846
Hsp92I GRCGYC 2 cut(s) 1694, 1811
HspAI GCGC 3 cut(s) 190, 298, 2338
Ksp22I TGATCA 3 cut(s) 1506, 2674, 3031
LguI GCTCTTC 2 cut(s) 492, 2334
LmnI GCTCC 6 cut(s) 172, 467, 765, 1617, 1882, 2014
MabI ACCWGGT 3 cut(s) 130, 1713, 2316
MaeI CTAG 8 cut(s) 182, 197, 968, 1409, 1733, 2133, 2580, 2760
MaeII ACGT 3 cut(s) 1211, 1258, 2846
MaeIII GTNAC 6 cut(s) 1812, 1987, 2078, 2545, 2777, 2842
MbiI CCGCTC 1 cut(s) 90
MfeI CAATTG 8 cut(s) 49, 558, 612, 906, 1554, 1740, 1848, 2883
MflI RGATCY 3 cut(s) 751, 1678, 1981
MhlI GDGCHC 7 cut(s) 177, 465, 472, 1530, 1572, 1603, 2416
MlsI TGGCCA 2 cut(s) 391, 2856
MluNI TGGCCA 2 cut(s) 391, 2856
MlyI GAGTC 3 cut(s) 739, 2641, 3055
MmeI TCCRAC 1 cut(s) 2480
Mox20I TGGCCA 2 cut(s) 391, 2856
Mph1103I ATGCAT 2 cut(s) 2731, 2832
MroXI GAANNNNTTC 1 cut(s) 800
MscI TGGCCA 2 cut(s) 391, 2856
MslI CAYNNNNRTG 3 cut(s) 773, 1565, 2409
Msp20I TGGCCA 2 cut(s) 391, 2856
MspI CCGG 2 cut(s) 404, 2013
MspR9I CCNGG 5 cut(s) 132, 1715, 1881, 2013, 2318
MunI CAATTG 8 cut(s) 49, 558, 612, 906, 1554, 1740, 1848, 2883
Mva1269I GAATGC 2 cut(s) 2107, 3073
MvaI CCWGG 4 cut(s) 132, 1715, 1881, 2318
MwoI GCNNNNNNNGC 9 cut(s) 43, 187, 374, 683, 862, 1550, 1598, 1745, 2129
NciI CCSGG 1 cut(s) 2013
NcoI CCATGG 2 cut(s) 701, 1560
NheI GCTAGC 2 cut(s) 196, 1732
NlaIV GGNNCC 8 cut(s) 519, 855, 1234, 1591, 2220, 2301, 2530, 2691
NmeAIII GCCGAG 1 cut(s) 3013
NmuCI GTSAC 5 cut(s) 1812, 1987, 2078, 2545, 2777
NsbI TGCGCA 1 cut(s) 299
NsiI ATGCAT 2 cut(s) 2731, 2832
NspI RCATGY 4 cut(s) 1477, 1807, 2344, 2834
OliI CACNNNNGTG 1 cut(s) 2409
PaeI GCATGC 2 cut(s) 2344, 2834
PagI TCATGA 1 cut(s) 1447
PaqCI CACCTGC 1 cut(s) 2828
PciI ACATGT 1 cut(s) 1803
PciSI GCTCTTC 2 cut(s) 492, 2334
PctI GAATGC 2 cut(s) 2107, 3073
PdmI GAANNNNTTC 1 cut(s) 800
PflMI CCANNNNNTGG 3 cut(s) 137, 1305, 2462
Ple19I CGATCG 1 cut(s) 902
PleI GAGTC 3 cut(s) 738, 2641, 3054
PpsI GAGTC 3 cut(s) 738, 2641, 3054
Ppu21I YACGTR 1 cut(s) 1212
PscI ACATGT 1 cut(s) 1803
PshBI ATTAAT 3 cut(s) 680, 1637, 2967
Psp124BI GAGCTC 2 cut(s) 177, 472
Psp6I CCWGG 4 cut(s) 130, 1713, 1879, 2316
PspFI CCCAGC 2 cut(s) 1608, 2636
PspGI CCWGG 4 cut(s) 130, 1713, 1879, 2316
PspN4I GGNNCC 8 cut(s) 519, 855, 1234, 1591, 2220, 2301, 2530, 2691
PspPI GGNCC 6 cut(s) 85, 517, 854, 2218, 2502, 2529
PstI CTGCAG 1 cut(s) 1598
PstNI CAGNNNCTG 1 cut(s) 3049
PsuI RGATCY 3 cut(s) 751, 1678, 1981
PvuI CGATCG 1 cut(s) 902
RsaI GTAC 4 cut(s) 346, 1219, 1719, 2403
RsaNI GTAC 4 cut(s) 345, 1218, 1718, 2402
RseI CAYNNNNRTG 3 cut(s) 773, 1565, 2409
SacI GAGCTC 2 cut(s) 177, 472
SapI GCTCTTC 2 cut(s) 492, 2334
Sau96I GGNCC 6 cut(s) 85, 517, 854, 2218, 2502, 2529
SbfI CCTGCAGG 1 cut(s) 1598
SchI GAGTC 3 cut(s) 739, 2641, 3055
ScrFI CCNGG 5 cut(s) 132, 1715, 1881, 2013, 2318
SdaI CCTGCAGG 1 cut(s) 1598
SduI GDGCHC 7 cut(s) 177, 465, 472, 1530, 1572, 1603, 2416
SexAI ACCWGGT 3 cut(s) 130, 1713, 2316
SfcI CTRYAG 2 cut(s) 363, 1594
SinI GGWCC 4 cut(s) 85, 517, 2218, 2502
SmiMI CAYNNNNRTG 3 cut(s) 773, 1565, 2409
SmlI CTYRAG 1 cut(s) 1523
SmoI CTYRAG 1 cut(s) 1523
SphI GCATGC 2 cut(s) 2344, 2834
Sse8387I CCTGCAGG 1 cut(s) 1598
SsiI CCGC 5 cut(s) 60, 88, 534, 1574, 1736
SspI AATATT 1 cut(s) 590
SspMI CTAG 8 cut(s) 182, 197, 968, 1409, 1733, 2133, 2580, 2760
SstI GAGCTC 2 cut(s) 177, 472
StyD4I CCNGG 5 cut(s) 130, 1713, 1879, 2011, 2316
StyI CCWWGG 3 cut(s) 153, 701, 1560
TaaI ACNGT 6 cut(s) 514, 1917, 2430, 2686, 3027, 3091
TaiI ACGT 3 cut(s) 1214, 1261, 2849
TaqI TCGA 5 cut(s) 24, 69, 2311, 2395, 2949
TatI WGTACW 1 cut(s) 344
TauI GCSGC 1 cut(s) 1739
TscAI CASTG 9 cut(s) 239, 679, 744, 1429, 1734, 1902, 1983, 2684, 2691
TseFI GTSAC 5 cut(s) 1812, 1987, 2078, 2545, 2777
Tsp45I GTSAC 5 cut(s) 1812, 1987, 2078, 2545, 2777
TspGWI ACGGA 3 cut(s) 480, 680, 1109
TspRI CASTG 9 cut(s) 239, 679, 744, 1429, 1734, 1902, 1983, 2684, 2691
Van91I CCANNNNNTGG 3 cut(s) 137, 1305, 2462
VneI GTGCAC 1 cut(s) 461
VpaK11BI GGWCC 4 cut(s) 85, 517, 2218, 2502
VspI ATTAAT 3 cut(s) 680, 1637, 2967
XapI RAATTY 3 cut(s) 811, 836, 3001
XbaI TCTAGA 1 cut(s) 1408
XceI RCATGY 4 cut(s) 1477, 1807, 2344, 2834
XmiI GTMKAC 1 cut(s) 1888
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 8 cut(s) 182, 197, 968, 1409, 1733, 2133, 2580, 2760
Zsp2I ATGCAT 2 cut(s) 2731, 2832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.