Rroxscaffold_5G00381160

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018427
Physical Location & Seq
Forward (+)
61227558 .. 61227959
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381160.1

Sequence Viewer

Length: 402 bp
ATGGGTGGTGGTTGGACGGTTCTGCCCTTGAGAGTTACCATCGAAGAAGTGCACTACATGCTTCACTGCGAGACTTGTTATTGGCTCAGTCAAGTTATGAGCGATTCAATGGAGCTGGAAGAAGAAGAAGAAAACCTAGCAAGTGATTATGAAGATGTAATTGGTATGAAACCTGCGAGTGAGTCGTCGATAAAGGTGTTGTTGAAGAGGGTAAGGGTTGGGAATAACAAAAAAGATGTCTGCACTGTTTGTCTCGAAGAATTGAGTACTGCAGGAATATCCTATGCTATGCAGATGCCTTGCAAACATGTGTTTCACGACGAGTGTGTTGTGAGATGGCTCAAGGAGAGTCATTATTGCCCAGTTTGCCGCTTTGAGATGCCTACTATTGAGAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

133

Amino Acids

15.31

Weight (kDa)

4.87

Isoelectric Point (pI)

80.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 78 - 124 2.1e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 80 - 124 5.5e-13 Ring finger domain
zf-C3HC4_2 PF13923 81 - 123 3.7e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 81 - 123 3.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 81 - 121 4e-07 RING-type zinc-finger
zf-RING_11 PF17123 81 - 110 1.3e-06 RING-like zinc finger
zf-RING_5 PF14634 81 - 124 7e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018427)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31700
rosa_chinensis RchiOBHm_Chr4g0440231
rosa_laevigata RLG00000006195
rosa_multiflora Rmu_sc0001685.1_g000030
rosa_roxburghii Rroxscaffold_5G00381160
rosa_rugosa Rorug04G0325400
rosa_samantha Rh4AG376100 Rh4CG403800 Rh4DG382900
rosa_wichuraiana Rw4G032190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AciI CCGC 1 cut(s) 370
AfaI GTAC 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 2 cut(s) 108, 205
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 65, 257
Alw44I GTGCAC 1 cut(s) 50
ApaLI GTGCAC 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
BaeGI GKGCMC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 2 cut(s) 47, 330
BcoDI GTCTC 2 cut(s) 65, 257
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 1 cut(s) 370
BlsI GCNGC 1 cut(s) 371
BmcAI AGTACT 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 285, 369
BmuI ACTGGG 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 49, 326
Bse1I ACTGG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 65, 257
Bsp1286I GDGCHC 1 cut(s) 54
BspACI CCGC 1 cut(s) 370
BspCNI CTCAG 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 19, 247
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 86
BstMAI GTCTC 2 cut(s) 65, 257
BstMWI GCNNNNNNNGC 2 cut(s) 58, 366
BstNSI RCATGY 2 cut(s) 61, 311
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 54
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 243
BveI ACCTGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 58, 308
CviJI RGCY 3 cut(s) 85, 115, 340
CviKI_1 RGCY 3 cut(s) 85, 115, 340
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
FaeI CATG 2 cut(s) 61, 311
FaiI YATR 7 cut(s) 59, 98, 150, 167, 285, 290, 309
FatI CATG 2 cut(s) 57, 307
Fnu4HI GCNGC 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 370
Hin1II CATG 2 cut(s) 61, 311
HinfI GANTC 3 cut(s) 104, 182, 349
Hpy166II GTNNAC 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 254, 317
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 2 cut(s) 190, 323
HpyCH4III ACNGT 2 cut(s) 19, 247
HpyCH4V TGCA 5 cut(s) 52, 243, 272, 292, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 366
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 2 cut(s) 61, 311
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 4 cut(s) 101, 186, 258, 375
LweI GCATC 2 cut(s) 285, 369
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 8 cut(s) 56, 131, 134, 137, 140, 164, 217, 269
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 3 cut(s) 159, 260, 397
MlyI GAGTC 2 cut(s) 191, 358
MnlI CCTC 1 cut(s) 201
MseI TTAA 1 cut(s) 400
MwoI GCNNNNNNNGC 2 cut(s) 58, 366
NlaIII CATG 2 cut(s) 61, 311
NspI RCATGY 2 cut(s) 61, 311
PciI ACATGT 1 cut(s) 307
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 371
PleI GAGTC 2 cut(s) 190, 357
PpsI GAGTC 2 cut(s) 190, 357
PscI ACATGT 1 cut(s) 307
PstI CTGCAG 1 cut(s) 274
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 1 cut(s) 370
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 2 cut(s) 191, 358
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 117, 138, 175, 198
SfaNI GCATC 2 cut(s) 285, 369
SfcI CTRYAG 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 28, 341
SmoI CTYRAG 2 cut(s) 28, 341
Sse9I AATT 3 cut(s) 159, 260, 397
SsiI CCGC 1 cut(s) 370
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 19, 247
TaqI TCGA 3 cut(s) 42, 188, 255
TasI AATT 3 cut(s) 159, 260, 397
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TscAI CASTG 2 cut(s) 71, 250
TspDTI ATGAA 2 cut(s) 165, 182
TspRI CASTG 2 cut(s) 71, 250
VneI GTGCAC 1 cut(s) 50
XceI RCATGY 2 cut(s) 61, 311
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.