Belongs to the class-I aminoacyl-tRNA synthetase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g33710 |
| rosa_chinensis | RchiOBHm_Chr4g0443181 |
| rosa_laevigata | RLG00000005949 |
| rosa_multiflora | Rmu_sc0007968.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00383780 |
| rosa_rugosa | Rorug04G0344700 |
| rosa_samantha | Rh4BG410900 Rh4CG426400 Rh4DG406000 |
| rosa_wichuraiana | Rw4G034430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 444 |
| AccB1I | GGYRCC | 1 cut(s) | 191 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 744, 1283 |
| AccI | GTMKAC | 2 cut(s) | 2867, 2979 |
| AccII | CGCG | 5 cut(s) | 820, 2010, 2430, 2661, 2907 |
| AccIII | TCCGGA | 1 cut(s) | 132 |
| AciI | CCGC | 3 cut(s) | 239, 277, 2005 |
| AclWI | GGATC | 4 cut(s) | 130, 143, 1713, 1944 |
| AcoI | YGGCCR | 2 cut(s) | 415, 1882 |
| AcsI | RAATTY | 2 cut(s) | 931, 2572 |
| AcuI | CTGAAG | 3 cut(s) | 1830, 2547, 2708 |
| AfeI | AGCGCT | 1 cut(s) | 726 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 139, 744, 790, 1283, 1880, 2692 |
| AflIII | ACRYGT | 1 cut(s) | 818 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1272, 1579 |
| AhlI | ACTAGT | 1 cut(s) | 2810 |
| AjnI | CCWGG | 9 cut(s) | 138, 412, 737, 1282, 1680, 1736, 1950, 1964, 2375 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 773, 805, 1083, 1115 |
| Alw21I | GWGCWC | 1 cut(s) | 1379 |
| AlwI | GGATC | 4 cut(s) | 130, 143, 1713, 1944 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 593 |
| Ama87I | CYCGRG | 3 cut(s) | 707, 1024, 1584 |
| Aor13HI | TCCGGA | 1 cut(s) | 132 |
| Aor51HI | AGCGCT | 1 cut(s) | 726 |
| AoxI | GGCC | 4 cut(s) | 415, 908, 1805, 1882 |
| ApoI | RAATTY | 2 cut(s) | 931, 2572 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2772 |
| AspLEI | GCGC | 8 cut(s) | 727, 2010, 2012, 2430, 2432, 2661, 2663, 2909 |
| AspS9I | GGNCC | 3 cut(s) | 545, 1147, 2479 |
| AsuHPI | GGTGA | 5 cut(s) | 191, 907, 1359, 1696, 1870 |
| AsuII | TTCGAA | 1 cut(s) | 370 |
| AvaI | CYCGRG | 3 cut(s) | 707, 1024, 1584 |
| AvaII | GGWCC | 3 cut(s) | 545, 1147, 2479 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 739, 772 |
| BalI | TGGCCA | 1 cut(s) | 417 |
| BamHI | GGATCC | 1 cut(s) | 135 |
| BanI | GGYRCC | 1 cut(s) | 191 |
| BanII | GRGCYC | 2 cut(s) | 1108, 1379 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2823, 2855 |
| Bbv12I | GWGCWC | 1 cut(s) | 1379 |
| BceAI | ACGGC | 1 cut(s) | 2291 |
| BciT130I | CCWGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| BciVI | GTATCC | 1 cut(s) | 959 |
| BclI | TGATCA | 2 cut(s) | 1663, 1860 |
| BcuI | ACTAGT | 1 cut(s) | 2810 |
| BfmI | CTRYAG | 4 cut(s) | 912, 1154, 1854, 2141 |
| BfoI | RGCGCY | 1 cut(s) | 728 |
| BfuI | GTATCC | 1 cut(s) | 959 |
| BglII | AGATCT | 2 cut(s) | 2490, 2833 |
| BmcAI | AGTACT | 4 cut(s) | 959, 1796, 2248, 2326 |
| Bme1390I | CCNGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| Bme18I | GGWCC | 3 cut(s) | 545, 1147, 2479 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1272, 1579 |
| BmeT110I | CYCGRG | 3 cut(s) | 707, 1024, 1584 |
| BmgT120I | GGNCC | 3 cut(s) | 545, 1147, 2479 |
| BmiI | GGNNCC | 6 cut(s) | 137, 193, 1148, 1633, 1679, 2481 |
| BmrFI | CCNGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| BmsI | GCATC | 8 cut(s) | 221, 499, 544, 592, 604, 724, 910, 2338 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 330, 362, 690, 722 |
| BpmI | CTGGAG | 2 cut(s) | 909, 2359 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1142 |
| Bpu14I | TTCGAA | 1 cut(s) | 370 |
| BpuEI | CTTGAG | 2 cut(s) | 1092, 2383 |
| BsaAI | YACGTR | 1 cut(s) | 1319 |
| BsaJI | CCNNGG | 8 cut(s) | 202, 738, 1737, 1964, 2445, 2676, 2718, 2922 |
| BsaWI | WCCGGW | 2 cut(s) | 132, 1918 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 218, 248, 2337, 2367 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 139, 744, 790, 1283, 1880, 2692 |
| Bse118I | RCCGGY | 1 cut(s) | 1880 |
| Bse1I | ACTGG | 4 cut(s) | 491, 691, 911, 2196 |
| Bse3DI | GCAATG | 6 cut(s) | 589, 651, 783, 1653, 1700, 2562 |
| BseAI | TCCGGA | 1 cut(s) | 132 |
| BseBI | CCWGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| BseDI | CCNNGG | 8 cut(s) | 202, 738, 1737, 1964, 2445, 2676, 2718, 2922 |
| BseGI | GGATG | 9 cut(s) | 320, 460, 1090, 1349, 1562, 1914, 2313, 2461, 2650 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 139, 744, 790, 1283, 1880, 2692 |
| BseMI | GCAATG | 6 cut(s) | 589, 651, 783, 1653, 1700, 2562 |
| BseMII | CTCAG | 4 cut(s) | 412, 1723, 1772, 2414 |
| BseNI | ACTGG | 4 cut(s) | 491, 691, 911, 2196 |
| BsePI | GCGCGC | 3 cut(s) | 2008, 2428, 2659 |
| BseRI | GAGGAG | 5 cut(s) | 2003, 2006, 2009, 2147, 2552 |
| BsgI | GTGCAG | 1 cut(s) | 2264 |
| Bsh1236I | CGCG | 5 cut(s) | 820, 2010, 2430, 2661, 2907 |
| BshFI | GGCC | 4 cut(s) | 417, 910, 1807, 1884 |
| BshNI | GGYRCC | 1 cut(s) | 191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1379 |
| BsiHKCI | CYCGRG | 3 cut(s) | 707, 1024, 1584 |
| BsiSI | CCGG | 3 cut(s) | 133, 1881, 1919 |
| BslFI | GGGAC | 5 cut(s) | 471, 1457, 1745, 2594, 2821 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 139, 744, 790, 1283, 1880, 2692 |
| BsmBI | CGTCTC | 2 cut(s) | 333, 2877 |
| BsmFI | GGGAC | 5 cut(s) | 471, 1457, 1745, 2594, 2821 |
| BsnI | GGCC | 4 cut(s) | 417, 910, 1807, 1884 |
| BsoBI | CYCGRG | 3 cut(s) | 707, 1024, 1584 |
| Bsp119I | TTCGAA | 1 cut(s) | 370 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1108, 1379 |
| Bsp13I | TCCGGA | 1 cut(s) | 132 |
| Bsp19I | CCATGG | 1 cut(s) | 2445 |
| BspACI | CCGC | 3 cut(s) | 239, 277, 2005 |
| BspANI | GGCC | 4 cut(s) | 417, 910, 1807, 1884 |
| BspCNI | CTCAG | 4 cut(s) | 411, 1722, 1771, 2415 |
| BspEI | TCCGGA | 1 cut(s) | 132 |
| BspFNI | CGCG | 5 cut(s) | 820, 2010, 2430, 2661, 2907 |
| BspHI | TCATGA | 2 cut(s) | 1225, 2568 |
| BspLI | GGNNCC | 6 cut(s) | 137, 193, 1148, 1633, 1679, 2481 |
| BspMAI | CTGCAG | 2 cut(s) | 916, 2145 |
| BspPI | GGATC | 4 cut(s) | 130, 143, 1713, 1944 |
| BspT104I | TTCGAA | 1 cut(s) | 370 |
| BspT107I | GGYRCC | 1 cut(s) | 191 |
| BsrDI | GCAATG | 6 cut(s) | 589, 651, 783, 1653, 1700, 2562 |
| BsrFI | RCCGGY | 1 cut(s) | 1880 |
| BsrI | ACTGG | 4 cut(s) | 491, 691, 911, 2196 |
| BssAI | RCCGGY | 1 cut(s) | 1880 |
| BssECI | CCNNGG | 8 cut(s) | 202, 738, 1737, 1964, 2445, 2676, 2718, 2922 |
| BssHII | GCGCGC | 3 cut(s) | 2008, 2428, 2659 |
| BssNAI | GTATAC | 1 cut(s) | 2868 |
| BssT1I | CCWWGG | 4 cut(s) | 202, 2445, 2676, 2718 |
| Bst1107I | GTATAC | 1 cut(s) | 2868 |
| Bst2UI | CCWGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| Bst4CI | ACNGT | 9 cut(s) | 191, 785, 947, 1341, 1855, 1947, 2082, 2844, 2901 |
| Bst6I | CTCTTC | 4 cut(s) | 2124, 2262, 2409, 2634 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 614, 920 |
| BstBAI | YACGTR | 1 cut(s) | 1319 |
| BstBI | TTCGAA | 1 cut(s) | 370 |
| BstC8I | GCNNGC | 8 cut(s) | 688, 912, 1243, 2010, 2148, 2283, 2430, 2661 |
| BstDEI | CTNAG | 8 cut(s) | 252, 398, 1011, 1114, 1142, 1709, 1758, 2423 |
| BstDSI | CCRYGG | 2 cut(s) | 2445, 2922 |
| BstF5I | GGATG | 9 cut(s) | 320, 460, 1090, 1349, 1562, 1914, 2313, 2461, 2650 |
| BstFNI | CGCG | 5 cut(s) | 820, 2010, 2430, 2661, 2907 |
| BstH2I | RGCGCY | 1 cut(s) | 728 |
| BstHHI | GCGC | 8 cut(s) | 727, 2010, 2012, 2430, 2432, 2661, 2663, 2909 |
| BstNI | CCWGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| BstNSI | RCATGY | 2 cut(s) | 212, 1979 |
| BstSCI | CCNGG | 9 cut(s) | 138, 412, 737, 1282, 1680, 1736, 1950, 1964, 2375 |
| BstSFI | CTRYAG | 4 cut(s) | 912, 1154, 1854, 2141 |
| BstUI | CGCG | 5 cut(s) | 820, 2010, 2430, 2661, 2907 |
| BstX2I | RGATCY | 5 cut(s) | 135, 1705, 1936, 2490, 2833 |
| BstYI | RGATCY | 5 cut(s) | 135, 1705, 1936, 2490, 2833 |
| BstZ17I | GTATAC | 1 cut(s) | 2868 |
| BsuI | GTATCC | 1 cut(s) | 959 |
| BsuRI | GGCC | 4 cut(s) | 417, 910, 1807, 1884 |
| BtgI | CCRYGG | 2 cut(s) | 2445, 2922 |
| BtgZI | GCGATG | 1 cut(s) | 1491 |
| BtsCI | GGATG | 9 cut(s) | 320, 460, 1090, 1349, 1562, 1914, 2313, 2461, 2650 |
| BtsI | GCAGTG | 3 cut(s) | 769, 1414, 2358 |
| BtsIMutI | CAGTG | 4 cut(s) | 769, 980, 1414, 2358 |
| Cac8I | GCNNGC | 8 cut(s) | 688, 912, 1243, 2010, 2148, 2283, 2430, 2661 |
| CaiI | CAGNNNCTG | 1 cut(s) | 593 |
| CciI | TCATGA | 2 cut(s) | 1225, 2568 |
| CfoI | GCGC | 8 cut(s) | 727, 2010, 2012, 2430, 2432, 2661, 2663, 2909 |
| Cfr10I | RCCGGY | 1 cut(s) | 1880 |
| Cfr13I | GGNCC | 3 cut(s) | 545, 1147, 2479 |
| CseI | GACGC | 4 cut(s) | 809, 826, 1661, 2907 |
| DdeI | CTNAG | 8 cut(s) | 252, 398, 1011, 1114, 1142, 1709, 1758, 2423 |
| DraI | TTTAAA | 1 cut(s) | 1066 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1272, 1579 |
| EaeI | YGGCCR | 2 cut(s) | 415, 1882 |
| Eam1104I | CTCTTC | 4 cut(s) | 2124, 2262, 2409, 2634 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1272, 1579 |
| EarI | CTCTTC | 4 cut(s) | 2124, 2262, 2409, 2634 |
| Ecl136II | GAGCTC | 1 cut(s) | 1377 |
| Eco130I | CCWWGG | 4 cut(s) | 202, 2445, 2676, 2718 |
| Eco24I | GRGCYC | 2 cut(s) | 1108, 1379 |
| Eco47I | GGWCC | 3 cut(s) | 545, 1147, 2479 |
| Eco47III | AGCGCT | 1 cut(s) | 726 |
| Eco53kI | GAGCTC | 1 cut(s) | 1377 |
| Eco57I | CTGAAG | 3 cut(s) | 1830, 2547, 2708 |
| Eco88I | CYCGRG | 3 cut(s) | 707, 1024, 1584 |
| EcoICRI | GAGCTC | 1 cut(s) | 1377 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1147, 2479 |
| EcoRI | GAATTC | 1 cut(s) | 2572 |
| EcoRII | CCWGG | 9 cut(s) | 138, 412, 737, 1282, 1680, 1736, 1950, 1964, 2375 |
| EcoT14I | CCWWGG | 4 cut(s) | 202, 2445, 2676, 2718 |
| EcoT22I | ATGCAT | 3 cut(s) | 214, 1977, 2782 |
| EcoT38I | GRGCYC | 2 cut(s) | 1108, 1379 |
| ErhI | CCWWGG | 4 cut(s) | 202, 2445, 2676, 2718 |
| Esp3I | CGTCTC | 2 cut(s) | 333, 2877 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 554, 586, 1083, 1115, 1619, 1651 |
| FaqI | GGGAC | 5 cut(s) | 471, 1457, 1745, 2594, 2821 |
| FbaI | TGATCA | 2 cut(s) | 1663, 1860 |
| FblI | GTMKAC | 2 cut(s) | 2867, 2979 |
| FokI | GGATG | 9 cut(s) | 307, 447, 1097, 1336, 1549, 1921, 2320, 2468, 2657 |
| FriOI | GRGCYC | 2 cut(s) | 1108, 1379 |
| GlaI | GCGC | 8 cut(s) | 726, 2009, 2011, 2429, 2431, 2660, 2662, 2908 |
| GsuI | CTGGAG | 2 cut(s) | 909, 2359 |
| HaeII | RGCGCY | 1 cut(s) | 728 |
| HaeIII | GGCC | 4 cut(s) | 417, 910, 1807, 1884 |
| HapII | CCGG | 3 cut(s) | 133, 1881, 1919 |
| HgaI | GACGC | 4 cut(s) | 809, 826, 1661, 2907 |
| HhaI | GCGC | 8 cut(s) | 727, 2010, 2012, 2430, 2432, 2661, 2663, 2909 |
| Hin6I | GCGC | 8 cut(s) | 725, 2008, 2010, 2428, 2430, 2659, 2661, 2907 |
| HinP1I | GCGC | 8 cut(s) | 725, 2008, 2010, 2428, 2430, 2659, 2661, 2907 |
| HincII | GTYRAC | 1 cut(s) | 2980 |
| HindII | GTYRAC | 1 cut(s) | 2980 |
| HindIII | AAGCTT | 4 cut(s) | 1721, 2019, 2157, 2292 |
| HpaII | CCGG | 3 cut(s) | 133, 1881, 1919 |
| HphI | GGTGA | 5 cut(s) | 191, 907, 1359, 1696, 1870 |
| Hpy166II | GTNNAC | 9 cut(s) | 842, 886, 1367, 1439, 1520, 1687, 2868, 2922, 2980 |
| Hpy188I | TCNGA | 8 cut(s) | 226, 247, 325, 853, 1761, 1801, 2455, 2695 |
| Hpy8I | GTNNAC | 9 cut(s) | 842, 886, 1367, 1439, 1520, 1687, 2868, 2922, 2980 |
| Hpy99I | CGWCG | 1 cut(s) | 2617 |
| HpyAV | CCTTC | 7 cut(s) | 21, 1009, 1160, 1645, 1805, 2095, 2236 |
| HpyCH4III | ACNGT | 9 cut(s) | 191, 785, 947, 1341, 1855, 1947, 2082, 2844, 2901 |
| HpyCH4IV | ACGT | 4 cut(s) | 342, 1273, 1318, 2615 |
| HpyF3I | CTNAG | 8 cut(s) | 252, 398, 1011, 1114, 1142, 1709, 1758, 2423 |
| HpySE526I | ACGT | 4 cut(s) | 342, 1273, 1318, 2615 |
| HspAI | GCGC | 8 cut(s) | 725, 2008, 2010, 2428, 2430, 2659, 2661, 2907 |
| Kpn2I | TCCGGA | 1 cut(s) | 132 |
| Ksp22I | TGATCA | 2 cut(s) | 1663, 1860 |
| LmnI | GCTCC | 6 cut(s) | 835, 928, 1382, 1683, 2378, 2864 |
| LweI | GCATC | 8 cut(s) | 221, 499, 544, 592, 604, 724, 910, 2338 |
| MaeII | ACGT | 4 cut(s) | 342, 1273, 1318, 2615 |
| MaeIII | GTNAC | 5 cut(s) | 1876, 2389, 2521, 2740, 2875 |
| MflI | RGATCY | 5 cut(s) | 135, 1705, 1936, 2490, 2833 |
| MhlI | GDGCHC | 2 cut(s) | 1108, 1379 |
| MlsI | TGGCCA | 1 cut(s) | 417 |
| MluI | ACGCGT | 1 cut(s) | 818 |
| MluNI | TGGCCA | 1 cut(s) | 417 |
| MlyI | GAGTC | 5 cut(s) | 719, 763, 1261, 2459, 2985 |
| MmeI | TCCRAC | 7 cut(s) | 204, 1404, 1821, 2295, 2433, 2559, 2673 |
| Mox20I | TGGCCA | 1 cut(s) | 417 |
| Mph1103I | ATGCAT | 3 cut(s) | 214, 1977, 2782 |
| MroI | TCCGGA | 1 cut(s) | 132 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2772 |
| MscI | TGGCCA | 1 cut(s) | 417 |
| MslI | CAYNNNNRTG | 2 cut(s) | 582, 1388 |
| Msp20I | TGGCCA | 1 cut(s) | 417 |
| MspI | CCGG | 3 cut(s) | 133, 1881, 1919 |
| MspR9I | CCNGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| MvaI | CCWGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| MvnI | CGCG | 5 cut(s) | 820, 2010, 2430, 2661, 2907 |
| NcoI | CCATGG | 1 cut(s) | 2445 |
| NlaIV | GGNNCC | 6 cut(s) | 137, 193, 1148, 1633, 1679, 2481 |
| NmuCI | GTSAC | 2 cut(s) | 1876, 2875 |
| NsiI | ATGCAT | 3 cut(s) | 214, 1977, 2782 |
| NspI | RCATGY | 2 cut(s) | 212, 1979 |
| NspV | TTCGAA | 1 cut(s) | 370 |
| PacI | TTAATTAA | 1 cut(s) | 1173 |
| PaeR7I | CTCGAG | 2 cut(s) | 707, 1584 |
| PagI | TCATGA | 2 cut(s) | 1225, 2568 |
| PauI | GCGCGC | 3 cut(s) | 2008, 2428, 2659 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2772 |
| PfeI | GAWTC | 8 cut(s) | 115, 519, 590, 977, 1058, 1623, 1844, 2543 |
| PflFI | GACNNNGTC | 1 cut(s) | 1874 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 744, 1283 |
| PfoI | TCCNGGA | 3 cut(s) | 138, 1950, 2375 |
| PleI | GAGTC | 5 cut(s) | 718, 762, 1261, 2458, 2984 |
| PpsI | GAGTC | 5 cut(s) | 718, 762, 1261, 2458, 2984 |
| Ppu21I | YACGTR | 1 cut(s) | 1319 |
| PpuMI | RGGWCCY | 2 cut(s) | 1147, 2479 |
| PsiI | TTATAA | 1 cut(s) | 444 |
| Psp124BI | GAGCTC | 1 cut(s) | 1379 |
| Psp5II | RGGWCCY | 2 cut(s) | 1147, 2479 |
| Psp6I | CCWGG | 9 cut(s) | 138, 412, 737, 1282, 1680, 1736, 1950, 1964, 2375 |
| PspGI | CCWGG | 9 cut(s) | 138, 412, 737, 1282, 1680, 1736, 1950, 1964, 2375 |
| PspN4I | GGNNCC | 6 cut(s) | 137, 193, 1148, 1633, 1679, 2481 |
| PspPI | GGNCC | 3 cut(s) | 545, 1147, 2479 |
| PspPPI | RGGWCCY | 2 cut(s) | 1147, 2479 |
| PspXI | VCTCGAGB | 1 cut(s) | 707 |
| PstI | CTGCAG | 2 cut(s) | 916, 2145 |
| PstNI | CAGNNNCTG | 1 cut(s) | 593 |
| PsuI | RGATCY | 5 cut(s) | 135, 1705, 1936, 2490, 2833 |
| PsyI | GACNNNGTC | 1 cut(s) | 1874 |
| PteI | GCGCGC | 3 cut(s) | 2008, 2428, 2659 |
| RseI | CAYNNNNRTG | 2 cut(s) | 582, 1388 |
| SacI | GAGCTC | 1 cut(s) | 1379 |
| SalI | GTCGAC | 1 cut(s) | 2978 |
| Sau96I | GGNCC | 3 cut(s) | 545, 1147, 2479 |
| ScaI | AGTACT | 4 cut(s) | 959, 1796, 2248, 2326 |
| SchI | GAGTC | 5 cut(s) | 719, 763, 1261, 2459, 2985 |
| ScrFI | CCNGG | 9 cut(s) | 140, 414, 739, 1284, 1682, 1738, 1952, 1966, 2377 |
| SduI | GDGCHC | 2 cut(s) | 1108, 1379 |
| SfaNI | GCATC | 8 cut(s) | 221, 499, 544, 592, 604, 724, 910, 2338 |
| SfcI | CTRYAG | 4 cut(s) | 912, 1154, 1854, 2141 |
| Sfr274I | CTCGAG | 2 cut(s) | 707, 1584 |
| SfuI | TTCGAA | 1 cut(s) | 370 |
| SinI | GGWCC | 3 cut(s) | 545, 1147, 2479 |
| SlaI | CTCGAG | 2 cut(s) | 707, 1584 |
| SmiI | ATTTAAAT | 1 cut(s) | 1066 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 582, 1388 |
| SmlI | CTYRAG | 4 cut(s) | 707, 1107, 1584, 2362 |
| SmoI | CTYRAG | 4 cut(s) | 707, 1107, 1584, 2362 |
| SpeI | ACTAGT | 1 cut(s) | 2810 |
| SsiI | CCGC | 3 cut(s) | 239, 277, 2005 |
| SspI | AATATT | 1 cut(s) | 2500 |
| SstI | GAGCTC | 1 cut(s) | 1379 |
| StyD4I | CCNGG | 9 cut(s) | 138, 412, 737, 1282, 1680, 1736, 1950, 1964, 2375 |
| StyI | CCWWGG | 4 cut(s) | 202, 2445, 2676, 2718 |
| SwaI | ATTTAAAT | 1 cut(s) | 1066 |
| TaaI | ACNGT | 9 cut(s) | 191, 785, 947, 1341, 1855, 1947, 2082, 2844, 2901 |
| TaiI | ACGT | 4 cut(s) | 345, 1276, 1321, 2618 |
| TaqI | TCGA | 9 cut(s) | 292, 370, 697, 708, 1585, 2024, 2162, 2966, 2979 |
| TatI | WGTACW | 4 cut(s) | 957, 1794, 2246, 2324 |
| TauI | GCSGC | 1 cut(s) | 2008 |
| TfiI | GAWTC | 8 cut(s) | 115, 519, 590, 977, 1058, 1623, 1844, 2543 |
| TscAI | CASTG | 4 cut(s) | 769, 987, 1414, 2358 |
| TseFI | GTSAC | 2 cut(s) | 1876, 2875 |
| Tsp45I | GTSAC | 2 cut(s) | 1876, 2875 |
| TspGWI | ACGGA | 4 cut(s) | 253, 2132, 2211, 2939 |
| TspRI | CASTG | 4 cut(s) | 769, 987, 1414, 2358 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1874 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 744, 1283 |
| VpaK11BI | GGWCC | 3 cut(s) | 545, 1147, 2479 |
| XapI | RAATTY | 2 cut(s) | 931, 2572 |
| XbaI | TCTAGA | 1 cut(s) | 1847 |
| XceI | RCATGY | 2 cut(s) | 212, 1979 |
| XhoI | CTCGAG | 2 cut(s) | 707, 1584 |
| XmiI | GTMKAC | 2 cut(s) | 2867, 2979 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2772 |
| ZrmI | AGTACT | 4 cut(s) | 959, 1796, 2248, 2326 |
| Zsp2I | ATGCAT | 3 cut(s) | 214, 1977, 2782 |