Rroxscaffold_6G00392330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018966
Physical Location & Seq
Reverse (-)
11843288 .. 11856517
13230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392330.1

Sequence Viewer

Length: 519 bp
ATGAAGGAGATGAGGAGAAGGGCCGTGAGAAGGTTGTGGGGTGGTGCACAAGGCATTGTCAATGGTGGCTTTAGAAGCTTGGAGGCGCGGTTTAGAGAGCACTTTGCGGCGAAATTAGATGAGGTCGGGCGTACATGGAATCGAGGCATAGCCAACAGTATGGCTTCCGTGTTTTCCTTTGAACGAAGGCCAAAGCTCACCGGAAGACAAACGACCGAATCTCCTTCAAGGCCTCCGGCGACTTCTCGGCGTAGCCTGCGAGCTCGTCAACCAACGATAACACCATTGAAACGTTGCAACGGAGACCTCGCGCCGAGTTCCTCGACTTGTAGCCTCGTGGAGCTCGTCAAGGCCATAAAGGCCGGGCCTTCGTCGCCGTGCGATTCGGATAGTGGCCACAGAAAACACGCCATGTGCAAGTTTCTCGATTGTTCGTTTCCAAAAGCTTCTGATGACAAATCACTGTGGCCCTCAACACGTGCTGCGTCTTCATACTCTCCCTATTCTATTTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.05

Weight (kDa)

10.71

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 88, 311
AciI CCGC 2 cut(s) 88, 107
AclI AACGTT 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 394
AcvI CACGTG 1 cut(s) 479
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 476
AgsI TTSAA 3 cut(s) 182, 228, 289
AluBI AGCT 5 cut(s) 78, 196, 263, 343, 446
AluI AGCT 5 cut(s) 78, 196, 263, 343, 446
Alw21I GWGCWC 4 cut(s) 49, 102, 265, 345
Alw26I GTCTC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 45
AoxI GGCC 8 cut(s) 21, 188, 230, 351, 360, 365, 394, 467
ApaLI GTGCAC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 482
AspLEI GCGC 2 cut(s) 88, 313
AspS9I GGNCC 3 cut(s) 21, 365, 468
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 396
BanII GRGCYC 2 cut(s) 265, 345
BauI CACGAG 1 cut(s) 335
BbrPI CACGTG 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 211, 480
Bbv12I GWGCWC 4 cut(s) 49, 102, 265, 345
BbvI GCAGC 1 cut(s) 469
BceAI ACGGC 2 cut(s) 8, 361
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 2 cut(s) 108, 483
BlsI GCNGC 2 cut(s) 109, 484
Bme1390I CCNGG 1 cut(s) 364
BmgT120I GGNCC 3 cut(s) 21, 365, 468
BmrFI CCNGG 1 cut(s) 364
BpiI GAAGAC 2 cut(s) 211, 480
BpuMI CCSGG 1 cut(s) 364
BsaAI YACGTR 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 469
Bsh1236I CGCG 2 cut(s) 88, 311
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 8 cut(s) 23, 190, 232, 353, 362, 367, 396, 469
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 4 cut(s) 49, 102, 265, 345
BsiSI CCGG 3 cut(s) 201, 236, 363
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 297
BsnI GGCC 8 cut(s) 23, 190, 232, 353, 362, 367, 396, 469
Bso31I GGTCTC 1 cut(s) 297
Bsp1286I GDGCHC 4 cut(s) 49, 102, 265, 345
BspACI CCGC 2 cut(s) 88, 107
BspANI GGCC 8 cut(s) 23, 190, 232, 353, 362, 367, 396, 469
BspFNI CGCG 2 cut(s) 88, 311
BspTNI GGTCTC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 158, 465
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 257, 261
BstFNI CGCG 2 cut(s) 88, 311
BstHHI GCGC 2 cut(s) 88, 313
BstMAI GTCTC 1 cut(s) 297
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 4 cut(s) 75, 256, 359, 373
BstSCI CCNGG 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 49
BstUI CGCG 2 cut(s) 88, 311
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 2 cut(s) 211, 480
BstXI CCANNNNNNTGG 1 cut(s) 160
BsuRI GGCC 8 cut(s) 23, 190, 232, 353, 362, 367, 396, 469
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 2 cut(s) 257, 261
CfoI GCGC 2 cut(s) 88, 313
Cfr13I GGNCC 3 cut(s) 21, 365, 468
CseI GACGC 1 cut(s) 474
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 135, 412
CviQI GTAC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 394
Ecl136II GAGCTC 2 cut(s) 263, 343
Eco147I AGGCCT 1 cut(s) 232
Eco24I GRGCYC 2 cut(s) 265, 345
Eco31I GGTCTC 1 cut(s) 297
Eco53kI GAGCTC 2 cut(s) 263, 343
Eco72I CACGTG 1 cut(s) 479
EcoICRI GAGCTC 2 cut(s) 263, 343
EcoT38I GRGCYC 2 cut(s) 265, 345
FaeI CATG 2 cut(s) 138, 415
FaiI YATR 6 cut(s) 136, 149, 161, 356, 413, 493
FatI CATG 2 cut(s) 134, 411
Fnu4HI GCNGC 2 cut(s) 108, 483
FriOI GRGCYC 2 cut(s) 265, 345
Fsp4HI GCNGC 2 cut(s) 108, 483
GlaI GCGC 2 cut(s) 87, 312
GluI GCNGC 2 cut(s) 108, 483
HaeIII GGCC 8 cut(s) 23, 190, 232, 353, 362, 367, 396, 469
HapII CCGG 3 cut(s) 201, 236, 363
HgaI GACGC 1 cut(s) 474
HhaI GCGC 2 cut(s) 88, 313
Hin1II CATG 2 cut(s) 138, 415
Hin6I GCGC 2 cut(s) 86, 311
HinP1I GCGC 2 cut(s) 86, 311
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HindIII AAGCTT 2 cut(s) 76, 444
HinfI GANTC 3 cut(s) 139, 218, 383
HpaII CCGG 3 cut(s) 201, 236, 363
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 47, 269
Hpy188I TCNGA 2 cut(s) 388, 451
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 2 cut(s) 47, 269
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 5 cut(s) 12, 24, 180, 234, 378
HpyCH4III ACNGT 2 cut(s) 158, 465
HpyCH4IV ACGT 2 cut(s) 292, 478
HpyCH4V TGCA 3 cut(s) 47, 297, 417
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 256, 359, 373
HpySE526I ACGT 2 cut(s) 292, 478
Hsp92II CATG 2 cut(s) 138, 415
HspAI GCGC 2 cut(s) 86, 311
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 4 cut(s) 214, 249, 269, 376
Lsp1109I GCAGC 1 cut(s) 469
MaeII ACGT 2 cut(s) 292, 478
MboII GAAGA 2 cut(s) 216, 480
MhlI GDGCHC 4 cut(s) 49, 102, 265, 345
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 1 cut(s) 113
MluNI TGGCCA 1 cut(s) 396
MnlI CCTC 9 cut(s) 6, 76, 115, 137, 243, 317, 331, 344, 481
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 3 cut(s) 201, 236, 363
MspR9I CCNGG 1 cut(s) 364
MvnI CGCG 2 cut(s) 88, 311
MwoI GCNNNNNNNGC 4 cut(s) 75, 256, 359, 373
NciI CCSGG 1 cut(s) 364
NlaIII CATG 2 cut(s) 138, 415
NmeAIII GCCGAG 2 cut(s) 226, 339
PceI AGGCCT 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 3 cut(s) 139, 218, 383
PkrI GCNGC 2 cut(s) 109, 484
PmaCI CACGTG 1 cut(s) 479
PmlI CACGTG 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 479
Psp124BI GAGCTC 2 cut(s) 265, 345
Psp1406I AACGTT 1 cut(s) 292
PspCI CACGTG 1 cut(s) 479
PspPI GGNCC 3 cut(s) 21, 365, 468
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacI GAGCTC 2 cut(s) 265, 345
SaqAI TTAA 1 cut(s) 517
SatI GCNGC 2 cut(s) 108, 483
Sau96I GGNCC 3 cut(s) 21, 365, 468
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 4 cut(s) 49, 102, 265, 345
SfiI GGCCNNNNNGGCC 1 cut(s) 359
Sse9I AATT 1 cut(s) 113
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 2 cut(s) 88, 107
SstI GAGCTC 2 cut(s) 265, 345
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 158, 465
TaiI ACGT 2 cut(s) 295, 481
TaqI TCGA 3 cut(s) 142, 323, 426
TaqII GACCGA 1 cut(s) 230
TasI AATT 1 cut(s) 113
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 3 cut(s) 139, 218, 383
Tru1I TTAA 1 cut(s) 517
Tru9I TTAA 1 cut(s) 517
TscAI CASTG 1 cut(s) 468
TseI GCWGC 1 cut(s) 482
TspDTI ATGAA 2 cut(s) 17, 480
TspGWI ACGGA 2 cut(s) 157, 315
TspRI CASTG 1 cut(s) 468
VneI GTGCAC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.