Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016743

Physical Location & Seq

Genomic Coordinates Reverse (-)

23262741 .. 23264611

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGACGGCCTCCGGCTCTCCCAACGCCGCCACCACCACTTAAACAAATATGATGACAGCCGCCGTGCCCAGCCCTATAATCTGTCCCGCAAAAAGGCCCGGCCCCCTCGGCCAGGCAAGAAGCGGTTCATCATCGAACCCTTCAAAGGTTTGGCCTCAATCCCAAAGCTCGCGTCTGTCACGCAGAAAAGTGTATCGGGGTCGTCGCAGCCCCTAGATAACCGCCATTGCAGCCGCCACCGTCGGTCTCGAGAAATTAGGAGCCAAAGCCAAGCGCCAATTCGTCGCCCTCCTCCGCCCCAATTCGCTTTTGCTCGGGGCCGTTTTCCGGACATGGATAATCGTGTTTCCATTGAGTTGATGCCTAATGTCATGTTCAAAAGTTGGTTGTCCGTGGGTATAAAGTTGACGGATAAAGCAGTTGGAAACTTCGATCAACCAAAAGCCGGAGGTGCCAACTCTGCTATGAAGGATACAAGTGAGGTGAATTCCAAGATAATGGTATCTAACAATACTGCAATGTCTTGTAGGCTTGAAATTAGACAAGTTGGAGAAGGGACACATCATGTTCCAGGACTTGTTGAGGCACACGTGAAAAACATGAATGAAGTCTGGGAAGTGATGCATCTTAGAATGGTGGTTCTGCACATTAGACTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

220

Amino Acids

25.07

Weight (kDa)

10.92

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016743)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29510 FvH4_1g29510 FvH4_1g29510 FvH4_1g29510 FvH4_1g29510 FvH4_1g29510 FvH4_1g29510 FvH4_1g29510
rosa_chinensis	RchiOBHm_Chr4g0387911
rosa_laevigata	RLG00000018091
rosa_multiflora	Rmu_sc0006221.1_g000008 Rmu_sc0012870.1_g000006
rosa_roxburghii	Rroxscaffold_6G00401020 Rroxscaffold_7G00208740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccII	CGCG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	7 cut(s)	28, 61, 88, 124, 223, 235, 296
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	487
AcvI	CACGTG	1 cut(s)	592
AfiI	CCNNNNNNNGG	5 cut(s)	94, 113, 146, 328, 446
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	4 cut(s)	145, 379, 536, 659
AjnI	CCWGG	2 cut(s)	112, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	252
Ama87I	CYCGRG	2 cut(s)	249, 315
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	6 cut(s)	7, 96, 101, 110, 153, 319
ApeKI	GCWGC	2 cut(s)	208, 231
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	97, 102, 319
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	496
AvaI	CYCGRG	2 cut(s)	249, 315
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	452
BbrPI	CACGTG	1 cut(s)	592
BbvI	GCAGC	2 cut(s)	220, 243
BceAI	ACGGC	3 cut(s)	22, 48, 306
BciT130I	CCWGG	2 cut(s)	114, 573
BciVI	GTATCC	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	109
BisI	GCNGC	5 cut(s)	28, 61, 209, 232, 235
BlsI	GCNGC	5 cut(s)	29, 62, 210, 233, 236
Bme1390I	CCNGG	3 cut(s)	100, 114, 573
BmeT110I	CYCGRG	2 cut(s)	249, 315
BmgT120I	GGNCC	3 cut(s)	97, 102, 319
BmiI	GGNNCC	4 cut(s)	104, 263, 320, 454
BmrFI	CCNGG	3 cut(s)	100, 114, 573
BmsI	GCATC	3 cut(s)	351, 612, 634
BpuMI	CCSGG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	592
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	107, 393
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 113, 146, 328, 446
Bse3DI	GCAATG	2 cut(s)	226, 525
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	114, 573
BseDI	CCNNGG	2 cut(s)	107, 393
BseLI	CCNNNNNNNGG	5 cut(s)	94, 113, 146, 328, 446
BseMI	GCAATG	2 cut(s)	226, 525
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	220, 243
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	6 cut(s)	9, 98, 103, 112, 155, 321
BshNI	GGYRCC	1 cut(s)	452
BsiHKCI	CYCGRG	2 cut(s)	249, 315
BsiSI	CCGG	4 cut(s)	13, 100, 329, 447
BslFI	GGGAC	2 cut(s)	70, 571
BslI	CCNNNNNNNGG	5 cut(s)	94, 113, 146, 328, 446
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	70, 571
BsnI	GGCC	6 cut(s)	9, 98, 103, 112, 155, 321
Bso31I	GGTCTC	1 cut(s)	252
BsoBI	CYCGRG	2 cut(s)	249, 315
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	7 cut(s)	28, 61, 88, 124, 223, 235, 296
BspANI	GGCC	6 cut(s)	9, 98, 103, 112, 155, 321
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	4 cut(s)	104, 263, 320, 454
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	252
BsrDI	GCAATG	2 cut(s)	226, 525
BssECI	CCNNGG	2 cut(s)	107, 393
BssMI	GATC	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	114, 573
Bst4CI	ACNGT	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	629
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 231, 452, 461
BstNI	CCWGG	2 cut(s)	114, 573
BstSCI	CCNGG	3 cut(s)	98, 112, 571
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	220, 243
BstXI	CCANNNNNNTGG	1 cut(s)	499
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	6 cut(s)	9, 98, 103, 112, 155, 321
BtgI	CCRYGG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	3 cut(s)	97, 102, 319
CseI	GACGC	1 cut(s)	162
CviAII	CATG	4 cut(s)	334, 373, 566, 601
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	252
Eco72I	CACGTG	1 cut(s)	592
Eco88I	CYCGRG	2 cut(s)	249, 315
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	112, 571
EcoT22I	ATGCAT	1 cut(s)	627
FaeI	CATG	4 cut(s)	337, 376, 569, 604
FaiI	YATR	8 cut(s)	51, 78, 335, 374, 401, 467, 567, 602
FaqI	GGGAC	2 cut(s)	70, 571
FatI	CATG	4 cut(s)	333, 372, 565, 600
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	5 cut(s)	28, 61, 209, 232, 235
Fsp4HI	GCNGC	5 cut(s)	28, 61, 209, 232, 235
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	5 cut(s)	28, 61, 209, 232, 235
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	6 cut(s)	9, 98, 103, 112, 155, 321
HapII	CCGG	4 cut(s)	13, 100, 329, 447
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	4 cut(s)	337, 376, 569, 604
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HpaII	CCGG	4 cut(s)	13, 100, 329, 447
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	249, 251, 329
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	3 cut(s)	208, 246, 288
HpyAV	CCTTC	3 cut(s)	151, 463, 548
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	4 cut(s)	231, 518, 625, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 231, 452, 461
HpyF3I	CTNAG	1 cut(s)	629
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	4 cut(s)	337, 376, 569, 604
HspAI	GCGC	1 cut(s)	275
Kpn2I	TCCGGA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	2 cut(s)	220, 243
LweI	GCATC	3 cut(s)	351, 612, 634
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	5 cut(s)	255, 279, 302, 487, 537
MmeI	TCCRAC	2 cut(s)	403, 529
MnlI	CCTC	8 cut(s)	20, 117, 166, 300, 303, 443, 475, 577
Mph1103I	ATGCAT	1 cut(s)	627
MroI	TCCGGA	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	41
MspI	CCGG	4 cut(s)	13, 100, 329, 447
MspR9I	CCNGG	3 cut(s)	100, 114, 573
MvaI	CCWGG	2 cut(s)	114, 573
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	109, 231, 452, 461
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	337, 376, 569, 604
NlaIV	GGNNCC	4 cut(s)	104, 263, 320, 454
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	627
PaeR7I	CTCGAG	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	29, 62, 210, 233, 236
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	112, 571
PspCI	CACGTG	1 cut(s)	592
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	2 cut(s)	112, 571
PspN4I	GGNNCC	4 cut(s)	104, 263, 320, 454
PspPI	GGNCC	3 cut(s)	97, 102, 319
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	5 cut(s)	28, 61, 209, 232, 235
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	97, 102, 319
ScrFI	CCNGG	3 cut(s)	100, 114, 573
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	151, 171, 454, 486, 594
SfaNI	GCATC	3 cut(s)	351, 612, 634
SfiI	GGCCNNNNNGGCC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	5 cut(s)	255, 279, 302, 487, 537
SsiI	CCGC	7 cut(s)	28, 61, 88, 124, 223, 235, 296
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	98, 112, 571
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	3 cut(s)	135, 250, 432
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	5 cut(s)	255, 279, 302, 487, 537
TauI	GCSGC	3 cut(s)	30, 63, 237
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	208, 231
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	4 cut(s)	118, 482, 617, 621
TspGWI	ACGGA	2 cut(s)	382, 425
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.