Rroxscaffold_7G00208740
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
58861047 .. 58862512
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208740.1

Sequence Viewer

Length: 252 bp
ATGGGATCTACTTGTTCCAGGGAATCAGCGGGAGCAGCTGCCAAAAGGCTTGAAATTAGACAAGCTGGAGAAGGGAGACATCATGTTCCAGGACTTGTTGAGGCACACGTGAAAAACATGAATGAAGTCCGGGAAGTTCTCCAAACCGACGTAATGCAAGGGCTGTTGGCTCAACCCATGTCAATGAGCATAGTAGCTGTGACTTTGGATTCAGATATTTTTACCAAGAATTTTGTATCCCAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.01

Weight (kDa)

6.82

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 229
AcvI CACGTG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 1 cut(s) 53
AjnI CCWGG 2 cut(s) 17, 88
AluBI AGCT 3 cut(s) 38, 65, 197
AluI AGCT 3 cut(s) 38, 65, 197
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 35, 38
ApoI RAATTY 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 131
BbrPI CACGTG 1 cut(s) 109
BbvI GCAGC 2 cut(s) 25, 47
BciT130I CCWGG 2 cut(s) 19, 90
BciVI GTATCC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 2 cut(s) 36, 39
BlsI GCNGC 2 cut(s) 37, 40
Bme1390I CCNGG 3 cut(s) 19, 90, 131
BmrFI CCNGG 3 cut(s) 19, 90, 131
BpmI CTGGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 19, 90
BseDI CCNNGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 25, 47
BsiSI CCGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 19, 90
BstBAI YACGTR 1 cut(s) 109
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 2 cut(s) 19, 90
BstSCI CCNGG 3 cut(s) 17, 88, 129
BstV1I GCAGC 2 cut(s) 25, 47
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 247
CviAII CATG 3 cut(s) 83, 118, 178
CviJI RGCY 6 cut(s) 38, 49, 65, 163, 170, 197
CviKI_1 RGCY 6 cut(s) 38, 49, 65, 163, 170, 197
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
Eco72I CACGTG 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 17, 88
FaeI CATG 3 cut(s) 86, 121, 181
FaiI YATR 4 cut(s) 84, 119, 179, 191
FatI CATG 3 cut(s) 82, 117, 177
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 36, 39
Fsp4HI GCNGC 2 cut(s) 36, 39
GluI GCNGC 2 cut(s) 36, 39
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 1 cut(s) 130
Hin1II CATG 3 cut(s) 86, 121, 181
HinfI GANTC 2 cut(s) 23, 209
HpaII CCGG 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 108, 150
HpyCH4V TGCA 2 cut(s) 157, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 2 cut(s) 108, 150
Hsp92II CATG 3 cut(s) 86, 121, 181
Kzo9I GATC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 6 cut(s) 4, 31, 51, 75, 102, 143
Lsp1109I GCAGC 2 cut(s) 25, 47
MaeII ACGT 2 cut(s) 108, 150
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MflI RGATCY 1 cut(s) 5
MluCI AATT 2 cut(s) 54, 229
MnlI CCTC 1 cut(s) 94
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 29, 38
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 3 cut(s) 19, 90, 131
MvaI CCWGG 2 cut(s) 19, 90
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 131
NdeII GATC 1 cut(s) 5
NlaIII CATG 3 cut(s) 86, 121, 181
NmuCI GTSAC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 23, 209
PfoI TCCNGGA 2 cut(s) 88, 129
PkrI GCNGC 2 cut(s) 37, 40
PmaCI CACGTG 1 cut(s) 109
PmlI CACGTG 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 17, 88
PspCI CACGTG 1 cut(s) 109
PspGI CCWGG 2 cut(s) 17, 88
PsuI RGATCY 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 182
SatI GCNGC 2 cut(s) 36, 39
Sau3AI GATC 1 cut(s) 5
ScrFI CCNGG 3 cut(s) 19, 90, 131
SetI ASST 5 cut(s) 40, 67, 111, 153, 199
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 2 cut(s) 54, 229
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 17, 88, 129
TaiI ACGT 2 cut(s) 111, 153
TasI AATT 2 cut(s) 54, 229
TfiI GAWTC 2 cut(s) 23, 209
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 35, 38
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 134, 138
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.