Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006985

Physical Location & Seq

Genomic Coordinates Reverse (-)

23898455 .. 23902014

Gene Structure 3560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGAGGAGCGTTTTTCTTCTCTCTGTTACATGTTTACAAACATTCAGATCTGAAGGTTGGGTTTCTCCGCAGTTACAAGGTTACTCTCTAAAGTTTGAACCTTTATATTCTGTTGTTAATGTATCATATATTCGAGGATCTATGTTATTCCAATTTAGTAATAACACCCTGTTTCATGTTAATCAGTTTAGAGATAATGCGGCTTTTTCTTATGAATATTCCGGGTGTCCGGGAATCTTTGAATTAGTTCAAAATCAGTTTTTTGAAACTGTTGCTTCAATTTTGGCCGTCTGGGTCTCTCTAGTTTTGAACCCAAAAGATGCAGAGGCCTCCACCGGAAGACTTTGCTTTGAAGGAGACCAAACCCCATCTCGGTGGGGGAGGATCTCCGGCGACAAGCACACGAGCACCTATGACCTCGTTGAGCAGATGCAGTACCTCTATGTTCGGGTTGTAAAGGCCAAGGACTTGCCTTCCAAGGATGTGACCGGCAGCTGTGACCCTTATGTAGAAGTTAAGCTGGGAAACTACAAGGGTACAACTCGGCATTTTGAGAAGAAGACCCATCCGGAGTGGAACCAGGTGTTTGCATTCTCGAAGGACCGGATCCAGGCTTCGGCCCTTGAGGTGATTGTGAAGGACAAGGATCTTATGAAGGATGATTTCATTGGCCACGTTATTTTTGACCTGAATGAGGTTCCGAAAAGGGTTCCACCTGATAGTCCCCTGGCGCCACAATGGTATAGACTGGAGGATAGGAAGGGGGAGAAGGCTAGGGGTGAGCTGATGTTGGCCGTTTGGATGGGCACTCAAGCTGATGAAGCATTTCCTGAAGCATGGCATTCCGATGCTGCCACAGTTAGTGGGGCTGACAGTCTGTCAAACATTCGATCAAAGGTGTATCTCTCTCCCAAGCTATGGTATTTGAGGGTTAATGTGATTGAGGCTCAGGATTTGATGCCGAGCGATAAAGGCAAGTTTCCGGAAGTTTATGTGAAGGCTATCCTGGGAAATCAGGCTTTGAGAACTCGAATTTCACAAAGCAGGAGTATAAATCCCATGTGGAATGAAGATTTAATGTTTGTAGCGTCAGAGCCTTTTGAGGAGCCATTGATTTTAAGTGTGGAAGATAGAGTTGCGCCAAACAAGGATGAAGTTCTGGGGAGGTGTGCTATACCTTTGCAGTATGTGGCCCGAAGGTATGATCATAAACCTGTGAACACTAGCTGGCACAATCTTGAGAAGCACATTATTGTAGAAGGGGAAAAGAAGAAGGATATTAAGTTTGCCAGCAGGATTCATATGAGGATCTGTCTAGAAGGTGGTTACCATGTGCTTGATGAGTCAACACACTATAGTAGTGATCTTAGACCAACAGCCAAACCGTTGTGGAAGTCCAGCATTGGGGTTCTGGAAGTGGGAATCCTGAATGCTCAGGGGTTGATGCCAATGAAGACAATAGATGGTAGGGGAACAACAGATGCTTACTGCGTTGCAAAATATGGGCAGAAGTGGGTTCGGACAAGAACCATTATTGATAGCTTTGCTCCTAGGTGGAATGAGCAATACACTTGGGAAGTTTTTGATCCTTGCACTGTCATTACAATTGGGGTCTTTGATAACTGTCATTTGCATGGAGGAGAGAAGGCTGCCGCGGCAAAGGATTCACGAATCGGGAAGGTCAGGATTCGTCTCTCTACCCTTGAAACTGATCGGGTTTACACACACTCTTATCCTCTTCTGGTTCTGCACCCCAGTGGTGTTAAGAAGATGGGTGAAATTCATATGGCTGTGAGGTTCACCTGCTCTTCTTTGCTGAACATGATGCATATGTACTCGCAACCACTGTTGCCCAAAATGCACTATCTTCATCCATTAACTGTAAGCCAGCTTGATAGCTTGAGGCACCAGGCCACTCTGATTGTATCAGTGAGGCTGAGCCGTGCTGAACCGCCCTTGAGAAAGGAGGTGGTTGAGTATATGCTGGACGTGGGTTCCCACATGTGGAGTATGAGAAGAAGCAAAGCTAATTTCTTCAGGATTATGAACGTTCTTGGTGGATTAATTGCTGTTGGAAAATGGTTTGATCAGATCTGTAATTGGAAAAACCCCATCACTACTGTGCTTATTCATATCCTGTTCATAATTCTGGTCATGTACCCAGAGCTGATATTACCTACAATTTTTCTCTACCTCTTTTTGATTGGAGTCTGGTACTACAGATGGAGGCCGAGGCATCCTCCTCACATGGACACTCGTCTCTCTCACGCAGATTCTGCACATCCTGATGAACTTGATGAAGAATTTGATACCTTCCCAACTTCACGACCTTCTGACATGGTGAGGATGAGATATGACAGATTGAGGAGTATTGCTGGGAGGATCCAGACAGTGGTTGGTGACCTGGCTACTCAAGGGGAGAGGCTGCAATCATTGTTGAGCTGGCGAGACCCCAGAGCTACAGCTCTGTTTGTGCTTTTCTGTCTGATTGCTGCCATTGTTCTGTATGTTACTCCATTCCAGATTGTGGCACTTCTCGCTGGATTCTATGTGTTAAGGCACCCAAGATTCCGCCATAAGCTTCCATCAGTGCCGTTGAATTTCTTCAGGAGGTTGCCAGCTAGGACCGACTGCATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

880

Amino Acids

101.07

Weight (kDa)

8.93

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	146 - 249	3.1e-23	C2 domain
C2	PF00168	307 - 412	5.8e-20	C2 domain
C2	PF00168	469 - 580	4.4e-20	C2 domain
Pex24p	PF06398	698 - 860	6.7e-06	Integral peroxisomal membrane peroxin
PRT_C	PF08372	725 - 880	9.5e-83	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51570 AT3G57880 AT3G57880 AT3G57880 AT3G57880
fragaria_vesca	FvH4_6g22730 FvH4_6g22730 FvH4_6g22730
malus_domestica	MD12G1061300.v1.1 MD14G1061300.v1.1
prunus_persica	Prupe.7G073400_v2.0.a1
pyrus_communis	pycom12g05420 pycom14g04960
rosa_chinensis	RchiOBHm_Chr3g0480351
rosa_laevigata	RLG00000023491
rosa_multiflora	Rmu_sc0004090.1_g000007
rosa_roxburghii	Rroxscaffold_6G00401530
rosa_rugosa	Rorug03G0182800 Rorug03G0182900 Rorug03G0182900
rosa_samantha	Rh3AG234600 Rh3BG266800 Rh3CG264400 Rh3DG260100
rosa_wichuraiana	Rw3G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1811
Acc36I	ACCTGC	1 cut(s)	1811
AccB1I	GGYRCC	3 cut(s)	730, 1905, 2559
AccB7I	CCANNNNNTGG	3 cut(s)	918, 2392, 2527
AccII	CGCG	1 cut(s)	1655
AccIII	TCCGGA	2 cut(s)	568, 982
AciI	CCGC	6 cut(s)	68, 200, 1653, 1655, 1952, 2572
AclI	AACGTT	1 cut(s)	2049
AclWI	GGATC	9 cut(s)	145, 392, 601, 614, 654, 1316, 1580, 2377, 2390
AcoI	YGGCCR	3 cut(s)	285, 670, 792
AcsI	RAATTY	4 cut(s)	1032, 1779, 2303, 2599
AcuI	CTGAAG	4 cut(s)	72, 852, 2020, 2590
AcyI	GRCGYC	1 cut(s)	731
AfaI	GTAC	5 cut(s)	437, 538, 1835, 2159, 2216
AfiI	CCNNNNNNNGG	9 cut(s)	372, 610, 616, 694, 918, 1404, 2004, 2392, 2527
AflIII	ACRYGT	2 cut(s)	29, 2001
AgsI	TTSAA	9 cut(s)	98, 242, 251, 266, 279, 310, 353, 1706, 2599
AhdI	GACNNNNNGTC	1 cut(s)	877
AjiI	CACGTC	1 cut(s)	1990
AjnI	CCWGG	6 cut(s)	579, 609, 726, 1005, 1908, 2403
AleI	CACNNNNGTG	2 cut(s)	1755, 2120
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	5 cut(s)	301, 351, 1697, 2264, 2442
AlwI	GGATC	9 cut(s)	145, 392, 601, 614, 654, 1316, 1580, 2377, 2390
AlwNI	CAGNNNCTG	1 cut(s)	2276
Aor13HI	TCCGGA	2 cut(s)	568, 982
AoxI	GGCC	9 cut(s)	285, 327, 459, 618, 670, 792, 1191, 1911, 2228
ApeKI	GCWGC	5 cut(s)	492, 851, 1649, 2425, 2492
ApoI	RAATTY	4 cut(s)	1032, 1779, 2303, 2599
AseI	ATTAAT	1 cut(s)	2063
Asp700I	GAANNNNTTC	3 cut(s)	246, 825, 2603
AspA2I	CCTAGG	1 cut(s)	1550
AspLEI	GCGC	2 cut(s)	733, 1141
AspS9I	GGNCC	4 cut(s)	601, 619, 1192, 2625
AsuC2I	CCSGG	2 cut(s)	223, 231
AsuHPI	GGTGA	6 cut(s)	640, 791, 1787, 1792, 2353, 2411
AvaII	GGWCC	2 cut(s)	601, 2625
AvrII	CCTAGG	1 cut(s)	1550
BaeGI	GKGCMC	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	672
BamHI	GGATCC	2 cut(s)	606, 2382
BanI	GGYRCC	3 cut(s)	730, 1905, 2559
BauI	CACGAG	1 cut(s)	403
BbsI	GAAGAC	3 cut(s)	346, 566, 1460
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	5 cut(s)	504, 838, 1636, 2412, 2479
BccI	CCATC	8 cut(s)	376, 573, 796, 1457, 1765, 2120, 2217, 2593
BceAI	ACGGC	4 cut(s)	272, 779, 1926, 2578
BciT130I	CCWGG	6 cut(s)	581, 611, 728, 1007, 1910, 2405
BclI	TGATCA	2 cut(s)	1204, 2086
BcnI	CCSGG	2 cut(s)	223, 231
BcoDI	GTCTC	5 cut(s)	301, 351, 1697, 2264, 2442
BfaI	CTAG	6 cut(s)	302, 774, 1224, 1316, 1551, 2622
BfmI	CTRYAG	3 cut(s)	1354, 2218, 2460
BfoI	RGCGCY	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	1811
BglII	AGATCT	2 cut(s)	47, 2091
BisI	GCNGC	8 cut(s)	201, 493, 852, 1650, 1653, 1656, 2426, 2493
BlnI	CCTAGG	1 cut(s)	1550
BlpI	GCTNAGC	1 cut(s)	1937
BlsI	GCNGC	8 cut(s)	202, 494, 853, 1651, 1654, 1657, 2427, 2494
Bme1390I	CCNGG	8 cut(s)	223, 231, 581, 611, 728, 1007, 1910, 2405
Bme18I	GGWCC	2 cut(s)	601, 2625
BmeRI	GACNNNNNGTC	1 cut(s)	877
BmgBI	CACGTC	1 cut(s)	1990
BmgT120I	GGNCC	4 cut(s)	601, 619, 1192, 2625
BmrFI	CCNGG	8 cut(s)	223, 231, 581, 611, 728, 1007, 1910, 2405
BmrI	ACTGGG	1 cut(s)	1749
BmsI	GCATC	8 cut(s)	310, 420, 838, 948, 1434, 1471, 1815, 2245
BmuI	ACTGGG	1 cut(s)	1749
BoxI	GACNNNNGTC	1 cut(s)	2256
BpiI	GAAGAC	3 cut(s)	346, 566, 1460
BplI	GAGNNNNNCTC	2 cut(s)	2224, 2256
BpmI	CTGGAG	1 cut(s)	770
Bpu10I	CCTNAGC	2 cut(s)	948, 1434
Bpu1102I	GCTNAGC	1 cut(s)	1937
BpuEI	CTTGAG	6 cut(s)	644, 795, 1259, 1921, 1978, 2397
BpuMI	CCSGG	2 cut(s)	223, 231
BsaHI	GRCGYC	1 cut(s)	731
BsaI	GGTCTC	3 cut(s)	301, 351, 2442
BsaJI	CCNNGG	7 cut(s)	462, 477, 726, 1006, 1550, 1653, 2231
BsaWI	WCCGGW	4 cut(s)	335, 568, 603, 982
Bsc4I	CCNNNNNNNGG	9 cut(s)	372, 610, 616, 694, 918, 1404, 2004, 2392, 2527
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	753, 1755
BseAI	TCCGGA	2 cut(s)	568, 982
BseBI	CCWGG	6 cut(s)	581, 611, 728, 1007, 1910, 2405
BseDI	CCNNGG	7 cut(s)	462, 477, 726, 1006, 1550, 1653, 2231
BseGI	GGATG	9 cut(s)	487, 565, 664, 807, 1156, 1870, 2236, 2281, 2352
BseLI	CCNNNNNNNGG	9 cut(s)	372, 610, 616, 694, 918, 1404, 2004, 2392, 2527
BseMII	CTCAG	3 cut(s)	962, 1448, 1928
BseNI	ACTGG	2 cut(s)	753, 1755
BseRI	GAGGAG	5 cut(s)	19, 1118, 1653, 2232, 2380
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	5 cut(s)	504, 838, 1636, 2412, 2479
BseYI	CCCAGC	2 cut(s)	520, 2375
BsgI	GTGCAG	2 cut(s)	1733, 2262
Bsh1236I	CGCG	1 cut(s)	1655
BshFI	GGCC	9 cut(s)	287, 329, 461, 620, 672, 794, 1193, 1913, 2230
BshNI	GGYRCC	3 cut(s)	730, 1905, 2559
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	8 cut(s)	222, 230, 336, 390, 489, 569, 604, 983
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	9 cut(s)	372, 610, 616, 694, 918, 1404, 2004, 2392, 2527
BsmAI	GTCTC	5 cut(s)	301, 351, 1697, 2264, 2442
BsmBI	CGTCTC	2 cut(s)	1697, 2264
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	3 cut(s)	590, 841, 1435
BsnI	GGCC	9 cut(s)	287, 329, 461, 620, 672, 794, 1193, 1913, 2230
Bso31I	GGTCTC	3 cut(s)	301, 351, 2442
Bsp1286I	GDGCHC	2 cut(s)	410, 809
Bsp13I	TCCGGA	2 cut(s)	568, 982
Bsp1720I	GCTNAGC	1 cut(s)	1937
BspACI	CCGC	6 cut(s)	68, 200, 1653, 1655, 1952, 2572
BspANI	GGCC	9 cut(s)	287, 329, 461, 620, 672, 794, 1193, 1913, 2230
BspCNI	CTCAG	3 cut(s)	961, 1447, 1929
BspEI	TCCGGA	2 cut(s)	568, 982
BspFNI	CGCG	1 cut(s)	1655
BspMI	ACCTGC	1 cut(s)	1811
BspPI	GGATC	9 cut(s)	145, 392, 601, 614, 654, 1316, 1580, 2377, 2390
BspQI	GCTCTTC	1 cut(s)	1813
BspT107I	GGYRCC	3 cut(s)	730, 1905, 2559
BspTNI	GGTCTC	3 cut(s)	301, 351, 2442
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	753, 1755
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	7 cut(s)	462, 477, 726, 1006, 1550, 1653, 2231
BssNI	GRCGYC	1 cut(s)	731
BssSI	CACGAG	1 cut(s)	403
BssT1I	CCWWGG	3 cut(s)	462, 477, 1550
Bst2BI	CACGAG	1 cut(s)	403
Bst2UI	CCWGG	6 cut(s)	581, 611, 728, 1007, 1910, 2405
Bst6I	CTCTTC	2 cut(s)	1743, 1813
BstACI	GRCGYC	1 cut(s)	731
BstAPI	GCANNNNNTGC	1 cut(s)	2276
BstC8I	GCNNGC	6 cut(s)	1229, 1291, 1889, 2444, 2619, 2636
BstDEI	CTNAG	4 cut(s)	948, 1367, 1434, 1937
BstDSI	CCRYGG	1 cut(s)	1653
BstEII	GGTNACC	2 cut(s)	1325, 2399
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	9 cut(s)	487, 565, 664, 807, 1156, 1870, 2236, 2281, 2352
BstFNI	CGCG	1 cut(s)	1655
BstH2I	RGCGCY	1 cut(s)	734
BstHHI	GCGC	2 cut(s)	733, 1141
BstMAI	GTCTC	5 cut(s)	301, 351, 1697, 2264, 2442
BstMWI	GCNNNNNNNGC	6 cut(s)	821, 972, 1655, 1858, 2276, 2537
BstNI	CCWGG	6 cut(s)	581, 611, 728, 1007, 1910, 2405
BstNSI	RCATGY	3 cut(s)	33, 2005, 2638
BstPAI	GACNNNNGTC	1 cut(s)	2256
BstPI	GGTNACC	2 cut(s)	1325, 2399
BstSCI	CCNGG	8 cut(s)	221, 229, 579, 609, 726, 1005, 1908, 2403
BstSFI	CTRYAG	3 cut(s)	1354, 2218, 2460
BstSLI	GKGCMC	1 cut(s)	809
BstUI	CGCG	1 cut(s)	1655
BstV1I	GCAGC	5 cut(s)	504, 838, 1636, 2412, 2479
BstV2I	GAAGAC	3 cut(s)	346, 566, 1460
BstX2I	RGATCY	8 cut(s)	47, 137, 384, 606, 646, 1308, 2091, 2382
BstXI	CCANNNNNNTGG	1 cut(s)	375
BstYI	RGATCY	8 cut(s)	47, 137, 384, 606, 646, 1308, 2091, 2382
BsuRI	GGCC	9 cut(s)	287, 329, 461, 620, 672, 794, 1193, 1913, 2230
BtgI	CCRYGG	1 cut(s)	1653
BtrI	CACGTC	1 cut(s)	1990
BtsCI	GGATG	9 cut(s)	487, 565, 664, 807, 1156, 1870, 2236, 2281, 2352
BtsIMutI	CAGTG	6 cut(s)	1593, 1762, 1844, 1935, 2397, 2595
BveI	ACCTGC	1 cut(s)	1811
Cac8I	GCNNGC	6 cut(s)	1229, 1291, 1889, 2444, 2619, 2636
CaiI	CAGNNNCTG	1 cut(s)	2276
CfoI	GCGC	2 cut(s)	733, 1141
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	4 cut(s)	601, 619, 1192, 2625
Cfr42I	CCGCGG	1 cut(s)	1656
CseI	GACGC	1 cut(s)	1077
CsiI	ACCWGGT	1 cut(s)	579
Csp6I	GTAC	5 cut(s)	436, 537, 1834, 2158, 2215
CspCI	CAANNNNNGTGG	2 cut(s)	1903, 1938
CviQI	GTAC	5 cut(s)	436, 537, 1834, 2158, 2215
DdeI	CTNAG	4 cut(s)	948, 1367, 1434, 1937
DinI	GGCGCC	1 cut(s)	732
DriI	GACNNNNNGTC	1 cut(s)	877
EaeI	YGGCCR	3 cut(s)	285, 670, 792
Eam1104I	CTCTTC	2 cut(s)	1743, 1813
Eam1105I	GACNNNNNGTC	1 cut(s)	877
EarI	CTCTTC	2 cut(s)	1743, 1813
EciI	GGCGGA	1 cut(s)	2561
Eco130I	CCWWGG	3 cut(s)	462, 477, 1550
Eco147I	AGGCCT	1 cut(s)	329
Eco31I	GGTCTC	3 cut(s)	301, 351, 2442
Eco47I	GGWCC	2 cut(s)	601, 2625
Eco57I	CTGAAG	4 cut(s)	72, 852, 2020, 2590
Eco91I	GGTNACC	2 cut(s)	1325, 2399
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoO65I	GGTNACC	2 cut(s)	1325, 2399
EcoRII	CCWGG	6 cut(s)	579, 609, 726, 1005, 1908, 2403
EcoT14I	CCWWGG	3 cut(s)	462, 477, 1550
EcoT22I	ATGCAT	1 cut(s)	1830
EgeI	GGCGCC	1 cut(s)	732
EheI	GGCGCC	1 cut(s)	732
ErhI	CCWWGG	3 cut(s)	462, 477, 1550
Esp3I	CGTCTC	2 cut(s)	1697, 2264
FaqI	GGGAC	1 cut(s)	708
FauNDI	CATATG	3 cut(s)	1302, 1785, 1830
FbaI	TGATCA	2 cut(s)	1204, 2086
Fnu4HI	GCNGC	8 cut(s)	201, 493, 852, 1650, 1653, 1656, 2426, 2493
FokI	GGATG	9 cut(s)	494, 552, 671, 814, 1163, 1857, 2223, 2268, 2359
Fsp4HI	GCNGC	8 cut(s)	201, 493, 852, 1650, 1653, 1656, 2426, 2493
FspBI	CTAG	6 cut(s)	302, 774, 1224, 1316, 1551, 2622
GlaI	GCGC	2 cut(s)	732, 1140
GluI	GCNGC	8 cut(s)	201, 493, 852, 1650, 1653, 1656, 2426, 2493
GsaI	CCCAGC	2 cut(s)	524, 2379
GsuI	CTGGAG	1 cut(s)	770
HaeII	RGCGCY	1 cut(s)	734
HaeIII	GGCC	9 cut(s)	287, 329, 461, 620, 672, 794, 1193, 1913, 2230
HapII	CCGG	8 cut(s)	222, 230, 336, 390, 489, 569, 604, 983
HgaI	GACGC	1 cut(s)	1077
HhaI	GCGC	2 cut(s)	733, 1141
Hin1I	GRCGYC	1 cut(s)	731
Hin6I	GCGC	2 cut(s)	731, 1139
HinP1I	GCGC	2 cut(s)	731, 1139
HincII	GTYRAC	1 cut(s)	1347
HindII	GTYRAC	1 cut(s)	1347
HindIII	AAGCTT	1 cut(s)	2579
HpaII	CCGG	8 cut(s)	222, 230, 336, 390, 489, 569, 604, 983
HphI	GGTGA	6 cut(s)	640, 791, 1787, 1792, 2353, 2411
Hpy166II	GTNNAC	5 cut(s)	35, 1219, 1347, 1720, 1800
Hpy8I	GTNNAC	5 cut(s)	35, 1219, 1347, 1720, 1800
HpyCH4IV	ACGT	3 cut(s)	675, 1989, 2049
HpyF10VI	GCNNNNNNNGC	6 cut(s)	821, 972, 1655, 1858, 2276, 2537
HpyF3I	CTNAG	4 cut(s)	948, 1367, 1434, 1937
HpySE526I	ACGT	3 cut(s)	675, 1989, 2049
Hsp92I	GRCGYC	1 cut(s)	731
HspAI	GCGC	2 cut(s)	731, 1139
KasI	GGCGCC	1 cut(s)	730
Kpn2I	TCCGGA	2 cut(s)	568, 982
Ksp22I	TGATCA	2 cut(s)	1204, 2086
KspI	CCGCGG	1 cut(s)	1656
LguI	GCTCTTC	1 cut(s)	1813
LmnI	GCTCC	3 cut(s)	6, 1105, 1552
Lsp1109I	GCAGC	5 cut(s)	504, 838, 1636, 2412, 2479
LweI	GCATC	8 cut(s)	310, 420, 838, 948, 1434, 1471, 1815, 2245
MabI	ACCWGGT	1 cut(s)	579
MaeI	CTAG	6 cut(s)	302, 774, 1224, 1316, 1551, 2622
MaeII	ACGT	3 cut(s)	675, 1989, 2049
MaeIII	GTNAC	8 cut(s)	25, 72, 80, 484, 497, 1325, 2399, 2509
MfeI	CAATTG	1 cut(s)	1605
MflI	RGATCY	8 cut(s)	47, 137, 384, 606, 646, 1308, 2091, 2382
MhlI	GDGCHC	2 cut(s)	410, 809
MlsI	TGGCCA	1 cut(s)	672
MluNI	TGGCCA	1 cut(s)	672
Mly113I	GGCGCC	1 cut(s)	731
MlyI	GAGTC	2 cut(s)	1352, 2217
MmeI	TCCRAC	1 cut(s)	2053
Mox20I	TGGCCA	1 cut(s)	672
Mph1103I	ATGCAT	1 cut(s)	1830
MroI	TCCGGA	2 cut(s)	568, 982
MroXI	GAANNNNTTC	3 cut(s)	246, 825, 2603
MscI	TGGCCA	1 cut(s)	672
MslI	CAYNNNNRTG	6 cut(s)	373, 846, 1632, 1755, 2120, 2286
Msp20I	TGGCCA	1 cut(s)	672
MspA1I	CMGCKG	2 cut(s)	495, 1655
MspI	CCGG	8 cut(s)	222, 230, 336, 390, 489, 569, 604, 983
MspR9I	CCNGG	8 cut(s)	223, 231, 581, 611, 728, 1007, 1910, 2405
MunI	CAATTG	1 cut(s)	1605
Mva1269I	GAATGC	3 cut(s)	590, 841, 1435
MvaI	CCWGG	6 cut(s)	581, 611, 728, 1007, 1910, 2405
MvnI	CGCG	1 cut(s)	1655
MwoI	GCNNNNNNNGC	6 cut(s)	821, 972, 1655, 1858, 2276, 2537
NarI	GGCGCC	1 cut(s)	731
NciI	CCSGG	2 cut(s)	223, 231
NdeI	CATATG	3 cut(s)	1302, 1785, 1830
NmeAIII	GCCGAG	3 cut(s)	523, 987, 2256
NmuCI	GTSAC	3 cut(s)	484, 497, 2399
NsiI	ATGCAT	1 cut(s)	1830
NspI	RCATGY	3 cut(s)	33, 2005, 2638
OliI	CACNNNNGTG	2 cut(s)	1755, 2120
PaeI	GCATGC	1 cut(s)	2638
PaqCI	CACCTGC	1 cut(s)	1811
PceI	AGGCCT	1 cut(s)	329
PciI	ACATGT	2 cut(s)	29, 2001
PciSI	GCTCTTC	1 cut(s)	1813
PctI	GAATGC	3 cut(s)	590, 841, 1435
PdmI	GAANNNNTTC	3 cut(s)	246, 825, 2603
PfeI	GAWTC	9 cut(s)	234, 1297, 1422, 1664, 1671, 1687, 2273, 2544, 2568
PflMI	CCANNNNNTGG	3 cut(s)	918, 2392, 2527
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	8 cut(s)	202, 494, 853, 1651, 1654, 1657, 2427, 2494
PleI	GAGTC	2 cut(s)	1351, 2216
PluTI	GGCGCC	1 cut(s)	734
PpsI	GAGTC	2 cut(s)	1351, 2216
PscI	ACATGT	2 cut(s)	29, 2001
PshAI	GACNNNNGTC	1 cut(s)	2256
PshBI	ATTAAT	1 cut(s)	2063
Psp1406I	AACGTT	1 cut(s)	2049
Psp6I	CCWGG	6 cut(s)	579, 609, 726, 1005, 1908, 2403
PspEI	GGTNACC	2 cut(s)	1325, 2399
PspFI	CCCAGC	2 cut(s)	520, 2375
PspGI	CCWGG	6 cut(s)	579, 609, 726, 1005, 1908, 2403
PspPI	GGNCC	4 cut(s)	601, 619, 1192, 2625
PstNI	CAGNNNCTG	1 cut(s)	2276
PsuI	RGATCY	8 cut(s)	47, 137, 384, 606, 646, 1308, 2091, 2382
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	5 cut(s)	437, 538, 1835, 2159, 2216
RsaNI	GTAC	5 cut(s)	436, 537, 1834, 2158, 2215
RseI	CAYNNNNRTG	6 cut(s)	373, 846, 1632, 1755, 2120, 2286
SacII	CCGCGG	1 cut(s)	1656
SapI	GCTCTTC	1 cut(s)	1813
SatI	GCNGC	8 cut(s)	201, 493, 852, 1650, 1653, 1656, 2426, 2493
Sau96I	GGNCC	4 cut(s)	601, 619, 1192, 2625
SchI	GAGTC	2 cut(s)	1352, 2217
ScrFI	CCNGG	8 cut(s)	223, 231, 581, 611, 728, 1007, 1910, 2405
SduI	GDGCHC	2 cut(s)	410, 809
SexAI	ACCWGGT	1 cut(s)	579
SfaNI	GCATC	8 cut(s)	310, 420, 838, 948, 1434, 1471, 1815, 2245
SfcI	CTRYAG	3 cut(s)	1354, 2218, 2460
SfoI	GGCGCC	1 cut(s)	732
Sfr303I	CCGCGG	1 cut(s)	1656
SgrBI	CCGCGG	1 cut(s)	1656
SinI	GGWCC	2 cut(s)	601, 2625
SmiMI	CAYNNNNRTG	6 cut(s)	373, 846, 1632, 1755, 2120, 2286
SmlI	CTYRAG	6 cut(s)	623, 810, 1238, 1900, 1957, 2412
SmoI	CTYRAG	6 cut(s)	623, 810, 1238, 1900, 1957, 2412
SphI	GCATGC	1 cut(s)	2638
SseBI	AGGCCT	1 cut(s)	329
SsiI	CCGC	6 cut(s)	68, 200, 1653, 1655, 1952, 2572
SspDI	GGCGCC	1 cut(s)	730
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	6 cut(s)	302, 774, 1224, 1316, 1551, 2622
StuI	AGGCCT	1 cut(s)	329
StyD4I	CCNGG	8 cut(s)	221, 229, 579, 609, 726, 1005, 1908, 2403
StyI	CCWWGG	3 cut(s)	462, 477, 1550
TaiI	ACGT	3 cut(s)	678, 1992, 2052
TaqI	TCGA	4 cut(s)	133, 596, 889, 1030
TaqII	GACCGA	1 cut(s)	2642
TatI	WGTACW	1 cut(s)	1833
TauI	GCSGC	3 cut(s)	203, 1655, 1658
TfiI	GAWTC	9 cut(s)	234, 1297, 1422, 1664, 1671, 1687, 2273, 2544, 2568
TscAI	CASTG	6 cut(s)	1600, 1762, 1851, 1935, 2397, 2595
TseFI	GTSAC	3 cut(s)	484, 497, 2399
TseI	GCWGC	5 cut(s)	492, 851, 1649, 2425, 2492
Tsp45I	GTSAC	3 cut(s)	484, 497, 2399
TspRI	CASTG	6 cut(s)	1600, 1762, 1851, 1935, 2397, 2595
Van91I	CCANNNNNTGG	3 cut(s)	918, 2392, 2527
VpaK11BI	GGWCC	2 cut(s)	601, 2625
VspI	ATTAAT	1 cut(s)	2063
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	4 cut(s)	1032, 1779, 2303, 2599
XbaI	TCTAGA	1 cut(s)	1315
XceI	RCATGY	3 cut(s)	33, 2005, 2638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2393
XmaJI	CCTAGG	1 cut(s)	1550
XmnI	GAANNNNTTC	3 cut(s)	246, 825, 2603
XspI	CTAG	6 cut(s)	302, 774, 1224, 1316, 1551, 2622
Zsp2I	ATGCAT	1 cut(s)	1830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.