Rorug03G0182900

Multiple C2 and transmembrane domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
15734200 .. 15736434
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0182900.1

Sequence Viewer

Length: 399 bp
ATGATAACACTAGGCTCAAAATTCAGGCAGATTAAATTAGACAAAAGAGAGAGAATCCTCTCCATACATGATTGGGGTATAGGTATGACGTCAAAGGAGGAGATCAAGAACTTGGGAACAATAGCAAAATCTGGAACTTCAGGTGCCACAGGCCTATACAAAACCTCGAAAAAAAAAAATAACTTTCAGCGTGGCAGATGCGTGTCCAGTGATGAGTTCAAAGTGCAAGAGCAAGTAGACAAATATTCCAAGATTTGGGGAAATGATCAGGAGCATGCCAAAAAGATGAGGAGTTCATTAATTGCAACACTTTTGAGCAAACCAACAACCAATAATTTGGTTAGTAGTATGTTGGATTTAGTACACAAGGATCTCTGGGCTGTTTTGAATTATTATTGA

Protein Analysis

132

Amino Acids

15.03

Weight (kDa)

9.8

Isoelectric Point (pI)

19.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 255
AccI GTMKAC 1 cut(s) 237
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 2 cut(s) 220, 388
AlwI GGATC 1 cut(s) 378
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 20
AseI ATTAAT 1 cut(s) 299
BanI GGYRCC 1 cut(s) 143
BclI TGATCA 1 cut(s) 265
BfaI CTAG 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 145
BmsI GCATC 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 113, 304
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 255
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 102, 265, 370
BspANI GGCC 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 207
BssMI GATC 3 cut(s) 102, 265, 370
BssNI GRCGYC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 276
BstKTI GATC 3 cut(s) 105, 268, 373
BstMBI GATC 3 cut(s) 102, 265, 370
BstNSI RCATGY 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 370
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 362
CviAII CATG 2 cut(s) 68, 275
CviJI RGCY 3 cut(s) 15, 153, 380
CviKI_1 RGCY 3 cut(s) 15, 153, 380
CviQI GTAC 1 cut(s) 362
DpnI GATC 3 cut(s) 104, 267, 372
DpnII GATC 3 cut(s) 102, 265, 370
Eco147I AGGCCT 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 123
FaeI CATG 2 cut(s) 71, 278
FaiI YATR 7 cut(s) 65, 69, 80, 86, 157, 276, 350
FatI CATG 2 cut(s) 67, 274
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 237
FspBI CTAG 1 cut(s) 11
HaeIII GGCC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 71, 278
HinfI GANTC 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 238, 364
Hpy188III TCNNGA 3 cut(s) 106, 132, 269
Hpy8I GTNNAC 2 cut(s) 238, 364
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 226, 305
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 71, 278
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 102, 265, 370
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 7 cut(s) 10, 117, 126, 135, 220, 254, 361
LweI GCATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 89
MalI GATC 3 cut(s) 104, 267, 372
MboI GATC 3 cut(s) 102, 265, 370
MflI RGATCY 1 cut(s) 370
MluCI AATT 5 cut(s) 20, 35, 300, 334, 388
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 68, 91, 175, 282
MseI TTAA 2 cut(s) 33, 299
NdeII GATC 3 cut(s) 102, 265, 370
NlaIII CATG 2 cut(s) 71, 278
NlaIV GGNNCC 1 cut(s) 145
NspI RCATGY 1 cut(s) 278
PaeI GCATGC 1 cut(s) 278
PceI AGGCCT 1 cut(s) 153
PfeI GAWTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 33, 299
Sau3AI GATC 3 cut(s) 102, 265, 370
SetI ASST 4 cut(s) 85, 92, 145, 167
SfaNI GCATC 1 cut(s) 188
SphI GCATGC 1 cut(s) 278
Sse9I AATT 5 cut(s) 20, 35, 300, 334, 388
SseBI AGGCCT 1 cut(s) 153
SspI AATATT 1 cut(s) 245
SspMI CTAG 1 cut(s) 11
StuI AGGCCT 1 cut(s) 153
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 167
TasI AATT 5 cut(s) 20, 35, 300, 334, 388
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 33, 299
Tru9I TTAA 2 cut(s) 33, 299
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 255
VspI ATTAAT 1 cut(s) 299
XapI RAATTY 1 cut(s) 20
XceI RCATGY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 11
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.