Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006985

Physical Location & Seq

Genomic Coordinates Forward (+)

15728174 .. 15729106

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0182800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAACCCATCGACGGCAAGAAAGACAAGGTGACAATCCGAGCGGTGAGCCACAACGAGGAGGGCCGGAAGATAGTGGAGAAGACGGAGGTCAAAACCCGCAACATCGACACCATCAAGTACGTGGAGAAGAAGCTCGTAGACATGGGATTGCAGGGCCGGGAGCGCCACCCCATCGATGGATTGGGAATCGGACAACCGCCGCCGAAGTCGGGCCACGGCGGGAAGTACACGTGGGAGGGACCCGGCGACATGGCGGAGAACGAGCTGGACCCGGTCCCGGCGGCCATAGATGAGAGGGATCCCAACTATGTGGATGAGGAGGAGGAGGCTGACGTGGCGGAAATGGTGGTGGGGGAGGTGGAGGTGGCGAAGGCGGCGGAGAACAGGGAGGGGGTGGCTAGAGTTGAGGTTGATCCAAAGCTCGGTGCTCAGACTTGGTTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

149

Amino Acids

16.47

Weight (kDa)

4.86

Isoelectric Point (pI)

21.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51570 AT3G57880 AT3G57880 AT3G57880 AT3G57880
fragaria_vesca	FvH4_6g22730 FvH4_6g22730 FvH4_6g22730
malus_domestica	MD12G1061300.v1.1 MD14G1061300.v1.1
prunus_persica	Prupe.7G073400_v2.0.a1
pyrus_communis	pycom12g05420 pycom14g04960
rosa_chinensis	RchiOBHm_Chr3g0480351
rosa_laevigata	RLG00000023491
rosa_multiflora	Rmu_sc0004090.1_g000007
rosa_roxburghii	Rroxscaffold_6G00401530
rosa_rugosa	Rorug03G0182800 Rorug03G0182900 Rorug03G0182900
rosa_samantha	Rh3AG234600 Rh3BG266800 Rh3CG264400 Rh3DG260100
rosa_wichuraiana	Rw3G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	296, 309, 410
AcoI	YGGCCR	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	122, 230
AfiI	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 425
AflIII	ACRYGT	1 cut(s)	231
AjiI	CACGTC	1 cut(s)	337
AluBI	AGCT	3 cut(s)	136, 268, 424
AluI	AGCT	3 cut(s)	136, 268, 424
Alw21I	GWGCWC	1 cut(s)	433
AlwI	GGATC	3 cut(s)	296, 309, 410
AoxI	GGCC	4 cut(s)	64, 157, 214, 285
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	6 cut(s)	64, 157, 214, 242, 271, 277
AsuC2I	CCSGG	4 cut(s)	161, 246, 275, 281
AsuHPI	GGTGA	2 cut(s)	43, 58
AvaII	GGWCC	3 cut(s)	242, 271, 277
BamHI	GGATCC	1 cut(s)	301
BbrPI	CACGTG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	433
BccI	CCATC	4 cut(s)	17, 122, 173, 182
BceAI	ACGGC	2 cut(s)	31, 235
BcnI	CCSGG	4 cut(s)	161, 246, 275, 281
BfaI	CTAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	3 cut(s)	203, 285, 378
BlsI	GCNGC	3 cut(s)	204, 286, 379
Bme1390I	CCNGG	4 cut(s)	161, 246, 275, 281
Bme18I	GGWCC	3 cut(s)	242, 271, 277
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	6 cut(s)	64, 157, 214, 242, 271, 277
BmiI	GGNNCC	5 cut(s)	243, 244, 273, 279, 303
BmrFI	CCNGG	4 cut(s)	161, 246, 275, 281
BoxI	GACNNNNGTC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	89
BpuMI	CCSGG	4 cut(s)	161, 246, 275, 281
Bsa29I	ATCGAT	1 cut(s)	177
BsaAI	YACGTR	2 cut(s)	124, 234
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 425
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 425
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	4 cut(s)	74, 335, 338, 341
BshFI	GGCC	4 cut(s)	66, 159, 216, 287
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	5 cut(s)	67, 160, 246, 275, 281
BslFI	GGGAC	2 cut(s)	255, 263
BslI	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 425
BsmFI	GGGAC	2 cut(s)	255, 263
BsnI	GGCC	4 cut(s)	66, 159, 216, 287
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	301, 415
BspANI	GGCC	4 cut(s)	66, 159, 216, 287
BspCNI	CTCAG	1 cut(s)	445
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	5 cut(s)	243, 244, 273, 279, 303
BspPI	GGATC	3 cut(s)	296, 309, 410
BsrBI	CCGCTC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	301, 415
BstBAI	YACGTR	2 cut(s)	124, 234
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	304, 418
BstMBI	GATC	2 cut(s)	301, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 338, 377
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSCI	CCNGG	4 cut(s)	159, 244, 273, 279
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	66, 159, 216, 287
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	322
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	6 cut(s)	64, 157, 214, 242, 271, 277
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	121, 229
CviAII	CATG	3 cut(s)	145, 253, 447
CviQI	GTAC	2 cut(s)	121, 229
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	303, 417
DpnII	GATC	2 cut(s)	301, 415
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	3 cut(s)	272, 356, 395
Eco47I	GGWCC	3 cut(s)	242, 271, 277
Eco72I	CACGTG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	242
FaeI	CATG	3 cut(s)	148, 256, 450
FaiI	YATR	5 cut(s)	146, 254, 290, 312, 448
FaqI	GGGAC	2 cut(s)	255, 263
FatI	CATG	3 cut(s)	144, 252, 446
FauI	CCCGC	2 cut(s)	107, 215
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	203, 285, 378
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	203, 285, 378
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	3 cut(s)	203, 285, 378
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	4 cut(s)	66, 159, 216, 287
HapII	CCGG	5 cut(s)	67, 160, 246, 275, 281
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	148, 256, 450
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	5 cut(s)	67, 160, 246, 275, 281
HphI	GGTGA	2 cut(s)	43, 58
Hpy166II	GTNNAC	3 cut(s)	142, 231, 444
Hpy188I	TCNGA	3 cut(s)	41, 194, 435
Hpy8I	GTNNAC	3 cut(s)	142, 231, 444
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	367
HpyCH4IV	ACGT	3 cut(s)	123, 233, 336
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 338, 377
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	3 cut(s)	123, 233, 336
Hsp92II	CATG	3 cut(s)	148, 256, 450
HspAI	GCGC	1 cut(s)	166
KflI	GGGWCCC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	301, 415
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	80, 140, 173, 254, 259, 288, 294, 373
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	3 cut(s)	123, 233, 336
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	303, 417
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	2 cut(s)	301, 415
MboII	GAAGA	3 cut(s)	82, 94, 142
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	433
MspI	CCGG	5 cut(s)	67, 160, 246, 275, 281
MspR9I	CCNGG	4 cut(s)	161, 246, 275, 281
MwoI	GCNNNNNNNGC	3 cut(s)	165, 338, 377
NciI	CCSGG	4 cut(s)	161, 246, 275, 281
NdeII	GATC	2 cut(s)	301, 415
NlaIII	CATG	3 cut(s)	148, 256, 450
NlaIV	GGNNCC	5 cut(s)	243, 244, 273, 279, 303
NmuCI	GTSAC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	204, 286, 379
PmaCI	CACGTG	1 cut(s)	234
PmlI	CACGTG	1 cut(s)	234
Ppu21I	YACGTR	2 cut(s)	124, 234
PpuMI	RGGWCCY	1 cut(s)	242
PshAI	GACNNNNGTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	242
PspCI	CACGTG	1 cut(s)	234
PspN4I	GGNNCC	5 cut(s)	243, 244, 273, 279, 303
PspPI	GGNCC	6 cut(s)	64, 157, 214, 242, 271, 277
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	122, 230
RsaNI	GTAC	2 cut(s)	121, 229
SatI	GCNGC	3 cut(s)	203, 285, 378
Sau3AI	GATC	2 cut(s)	301, 415
Sau96I	GGNCC	6 cut(s)	64, 157, 214, 242, 271, 277
ScrFI	CCNGG	4 cut(s)	161, 246, 275, 281
SduI	GDGCHC	1 cut(s)	433
SinI	GGWCC	3 cut(s)	242, 271, 277
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	4 cut(s)	159, 244, 273, 279
TaiI	ACGT	3 cut(s)	126, 236, 339
TaqI	TCGA	3 cut(s)	12, 108, 177
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	3 cut(s)	205, 287, 380
TfiI	GAWTC	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	3 cut(s)	242, 271, 277
XcmI	CCANNNNNNNNNTGG	3 cut(s)	121, 176, 181
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.