Rroxscaffold_6G00418620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019395
Physical Location & Seq
Reverse (-)
40192617 .. 40199244
6628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418620.1

Sequence Viewer

Length: 435 bp
ATGGTCAGCCCAAATGACCGGTTCAAATGCTTAGCCCAAGGATTGGGCAAGCCCAAACTATCATTACTCGGGAGTAAACATGTCTTGCATCTTTTGCCTCCCACTGGCCACCTGAGTGATAAGGTTGGTGACCTTGGAAGCCTCACCGCCTTGCGCAGAGGCCCAATACATAAGGAGGCACCACTGGCACGAGCCAAGAGAGAACCAGTGCACTTCGGTTTTGGTCAGGCATGTGAAAGCCCCTGTGAATCAGATCTGGCGAAGAAGAAGATGGCCTTAAAATCAGCATCTTACCTCAGGTCCTCAGCTAGTTGTTCATGGATCTTAGATACACAGGAACGGAAATTAGATGATCCGATTGAGTACCCGTCACACTCCGTAGATAAATTAGCTAGTTTTTGTTTAGTGATCAAAGATATGGTTTGGGGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.78

Weight (kDa)

9.01

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461391
rosa_roxburghii Rroxscaffold_6G00418330 Rroxscaffold_6G00418620
rosa_rugosa Rorug03G0050200
rosa_samantha Rh3AG108100 Rh3BG112200 Rh3DG113800
rosa_wichuraiana Rw3G009220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 43
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 329, 347
AcoI YGGCCR 1 cut(s) 106
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 43, 104
AflIII ACRYGT 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 25
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 2 cut(s) 308, 392
AluI AGCT 2 cut(s) 308, 392
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 2 cut(s) 329, 347
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 3 cut(s) 106, 160, 273
ApaLI GTGCAC 1 cut(s) 209
AsiGI ACCGGT 1 cut(s) 18
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 161, 300
AsuHPI GGTGA 2 cut(s) 136, 140
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 300
AxyI CCTNAGG 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 178
BauI CACGAG 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 265
BclI TGATCA 1 cut(s) 408
BfaI CTAG 2 cut(s) 309, 393
BglII AGATCT 1 cut(s) 253
BlpI GCTNAGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 300
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 161, 300
BmiI GGNNCC 1 cut(s) 180
BmsI GCATC 2 cut(s) 97, 296
Bpu10I CCTNAGC 1 cut(s) 304
Bpu1102I GCTNAGC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 37, 133
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 104
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 3 cut(s) 109, 189, 206
Bse21I CCTNAGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 37, 133
BseLI CCNNNNNNNGG 2 cut(s) 43, 104
BseMII CTCAG 3 cut(s) 104, 310, 318
BseNI ACTGG 3 cut(s) 109, 189, 206
BseSI GKGCMC 1 cut(s) 213
BshFI GGCC 3 cut(s) 108, 162, 275
BshNI GGYRCC 1 cut(s) 178
BshTI ACCGGT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 43, 104
BsnI GGCC 3 cut(s) 108, 162, 275
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 253, 321, 352, 408
Bsp1720I GCTNAGC 1 cut(s) 31
BspACI CCGC 1 cut(s) 147
BspANI GGCC 3 cut(s) 108, 162, 275
BspCNI CTCAG 3 cut(s) 105, 309, 317
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 329, 347
BspT107I GGYRCC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 18
BsrI ACTGG 3 cut(s) 109, 189, 206
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 37, 133
BssMI GATC 4 cut(s) 253, 321, 352, 408
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 37, 133
Bst2BI CACGAG 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 5 cut(s) 31, 113, 296, 304, 325
BstEII GGTNACC 1 cut(s) 128
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 4 cut(s) 256, 324, 355, 411
BstMBI GATC 4 cut(s) 253, 321, 352, 408
BstMWI GCNNNNNNNGC 2 cut(s) 94, 185
BstNSI RCATGY 2 cut(s) 83, 234
BstPI GGTNACC 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 253, 321
BstYI RGATCY 2 cut(s) 253, 321
Bsu36I CCTNAGG 1 cut(s) 296
BsuRI GGCC 3 cut(s) 108, 162, 275
BtsIMutI CAGTG 3 cut(s) 102, 182, 213
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 161, 300
Csp6I GTAC 1 cut(s) 364
CspAI ACCGGT 1 cut(s) 18
CviAII CATG 3 cut(s) 80, 231, 318
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 5 cut(s) 31, 113, 296, 304, 325
DpnI GATC 4 cut(s) 255, 323, 354, 410
DpnII GATC 4 cut(s) 253, 321, 352, 408
EaeI YGGCCR 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 37, 133
Eco47I GGWCC 1 cut(s) 300
Eco81I CCTNAGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 300
EcoO65I GGTNACC 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 37, 133
ErhI CCWWGG 2 cut(s) 37, 133
FaeI CATG 3 cut(s) 83, 234, 321
FaiI YATR 5 cut(s) 81, 171, 232, 319, 419
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 3 cut(s) 79, 230, 317
FbaI TGATCA 1 cut(s) 408
FspBI CTAG 2 cut(s) 309, 393
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
HaeIII GGCC 3 cut(s) 108, 162, 275
HapII CCGG 1 cut(s) 19
HhaI GCGC 1 cut(s) 156
Hin1II CATG 3 cut(s) 83, 234, 321
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 19
HphI GGTGA 2 cut(s) 136, 140
Hpy166II GTNNAC 2 cut(s) 77, 211
Hpy188I TCNGA 2 cut(s) 253, 357
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 77, 211
HpyCH4V TGCA 2 cut(s) 88, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 185
HpyF3I CTNAG 5 cut(s) 31, 113, 296, 304, 325
Hsp92II CATG 3 cut(s) 83, 234, 321
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 4 cut(s) 253, 321, 352, 408
LweI GCATC 2 cut(s) 97, 296
MaeI CTAG 2 cut(s) 309, 393
MaeIII GTNAC 2 cut(s) 128, 369
MalI GATC 4 cut(s) 255, 323, 354, 410
MboI GATC 4 cut(s) 253, 321, 352, 408
MboII GAAGA 3 cut(s) 274, 277, 280
MflI RGATCY 2 cut(s) 253, 321
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 2 cut(s) 344, 386
MluNI TGGCCA 1 cut(s) 108
MnlI CCTC 6 cut(s) 108, 152, 152, 169, 305, 313
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 278, 433
MslI CAYNNNNRTG 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 94, 185
NdeII GATC 4 cut(s) 253, 321, 352, 408
NlaIII CATG 3 cut(s) 83, 234, 321
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 128, 369
NsbI TGCGCA 1 cut(s) 155
NspI RCATGY 2 cut(s) 83, 234
OliI CACNNNNGTG 1 cut(s) 114
PciI ACATGT 1 cut(s) 79
PfeI GAWTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 43
PinAI ACCGGT 1 cut(s) 18
PpuMI RGGWCCY 1 cut(s) 300
PscI ACATGT 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 300
PspEI GGTNACC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 161, 300
PspPPI RGGWCCY 1 cut(s) 300
PsuI RGATCY 2 cut(s) 253, 321
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 278, 433
Sau3AI GATC 4 cut(s) 253, 321, 352, 408
Sau96I GGNCC 2 cut(s) 161, 300
SduI GDGCHC 1 cut(s) 213
SetI ASST 7 cut(s) 114, 126, 135, 297, 302, 310, 394
SfaNI GCATC 2 cut(s) 97, 296
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 2 cut(s) 344, 386
SsiI CCGC 1 cut(s) 147
SspMI CTAG 2 cut(s) 309, 393
StyI CCWWGG 2 cut(s) 37, 133
TasI AATT 2 cut(s) 344, 386
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 278, 433
Tru9I TTAA 2 cut(s) 278, 433
TscAI CASTG 3 cut(s) 109, 189, 213
TseFI GTSAC 2 cut(s) 128, 369
Tsp45I GTSAC 2 cut(s) 128, 369
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 2 cut(s) 355, 367
TspRI CASTG 3 cut(s) 109, 189, 213
Van91I CCANNNNNTGG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 300
XceI RCATGY 2 cut(s) 83, 234
XspI CTAG 2 cut(s) 309, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.