Rh3DG113800

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019395
Physical Location & Seq
Forward (+)
9420573 .. 9422127
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG113800.1

Sequence Viewer

Length: 411 bp
ATGACCACCAACACCACCGAAAAAGAGTCGACTGCAACAATTCCCGACGATAACAATGATGAAGTCATCATCTGGGGTTTGGGCGGACTTGGAAATTATGAAGGTCGAATTAATGGTACGTTTAACCTTGTGTTCCTTTCAAATGGGAGGCTTGGGAATGAGTTATGTCTACACCGTTGGCTCGAAACTGCCATATATCTCTTGCATCTCTTGCCTCCCACTGGCCACCTGAGTGATAAGGTTGGTGACCCTGGAAGCCTCACTGTTATGCAAGATAGTGTACTTACAACTTGCGCGGAGGCCCAATACATAAGGAGGCACCACAGGCACGAGCCCAGAGAGAACCAGTGCACTTCGGCTCTGGTCAGGCATGTCAAAGCCCCTGTGCATCTGGTAAGTGTCTATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

6.02

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461391
rosa_roxburghii Rroxscaffold_6G00418330 Rroxscaffold_6G00418620
rosa_rugosa Rorug03G0050200
rosa_samantha Rh3AG108100 Rh3BG112200 Rh3DG113800
rosa_wichuraiana Rw3G009220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AccI GTMKAC 2 cut(s) 29, 169
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 84, 296
AcoI YGGCCR 1 cut(s) 223
AfaI GTAC 2 cut(s) 118, 282
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 141
AjnI CCWGG 1 cut(s) 250
AleI CACNNNNGTG 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 349
AoxI GGCC 2 cut(s) 223, 300
ApaLI GTGCAC 1 cut(s) 349
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 353
BalI TGGCCA 1 cut(s) 225
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 336
BauI CACGAG 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 214, 397
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 226, 346
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 2 cut(s) 226, 346
BseSI GKGCMC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 225, 302
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 2 cut(s) 225, 302
Bsp1286I GDGCHC 2 cut(s) 336, 353
BspACI CCGC 2 cut(s) 84, 296
BspANI GGCC 2 cut(s) 225, 302
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 318
BsrI ACTGG 2 cut(s) 226, 346
BssECI CCNNGG 1 cut(s) 250
BssSI CACGAG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 176, 265
BstAPI GCANNNNNTGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 230
BstEII GGTNACC 1 cut(s) 245
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 211, 325
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 1 cut(s) 296
BsuRI GGCC 2 cut(s) 225, 302
BtsIMutI CAGTG 3 cut(s) 219, 261, 353
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 117, 281
CviAII CATG 1 cut(s) 371
CviJI RGCY 8 cut(s) 151, 181, 225, 258, 302, 334, 359, 380
CviKI_1 RGCY 8 cut(s) 151, 181, 225, 258, 302, 334, 359, 380
CviQI GTAC 2 cut(s) 117, 281
DdeI CTNAG 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 223
EciI GGCGGA 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 336
Eco91I GGTNACC 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 1 cut(s) 374
FaiI YATR 7 cut(s) 99, 166, 194, 196, 269, 311, 372
FatI CATG 1 cut(s) 370
FblI GTMKAC 2 cut(s) 29, 169
FriOI GRGCYC 1 cut(s) 336
GlaI GCGC 1 cut(s) 295
HaeIII GGCC 2 cut(s) 225, 302
HhaI GCGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 4 cut(s) 30, 170, 281, 351
Hpy188I TCNGA 1 cut(s) 410
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 4 cut(s) 30, 170, 281, 351
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 176, 265
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 35, 205, 271, 351, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 325
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 1 cut(s) 294
LweI GCATC 2 cut(s) 214, 397
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 245
MhlI GDGCHC 2 cut(s) 336, 353
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 3 cut(s) 39, 94, 108
MluNI TGGCCA 1 cut(s) 225
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 5 cut(s) 141, 225, 269, 292, 309
Mox20I TGGCCA 1 cut(s) 225
MscI TGGCCA 1 cut(s) 225
MseI TTAA 2 cut(s) 111, 123
MslI CAYNNNNRTG 2 cut(s) 231, 266
Msp20I TGGCCA 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 211, 325
NlaIII CATG 1 cut(s) 374
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 231
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 245
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 1 cut(s) 301
RsaI GTAC 2 cut(s) 118, 282
RsaNI GTAC 2 cut(s) 117, 281
RseI CAYNNNNRTG 2 cut(s) 231, 266
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 111, 123
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 336, 353
SetI ASST 5 cut(s) 106, 122, 129, 231, 243
SfaNI GCATC 2 cut(s) 214, 397
SmiMI CAYNNNNRTG 2 cut(s) 231, 266
Sse9I AATT 3 cut(s) 39, 94, 108
SsiI CCGC 2 cut(s) 84, 296
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 176, 265
TaiI ACGT 1 cut(s) 122
TaqI TCGA 3 cut(s) 29, 106, 183
TasI AATT 3 cut(s) 39, 94, 108
TatI WGTACW 1 cut(s) 280
Tru1I TTAA 2 cut(s) 111, 123
Tru9I TTAA 2 cut(s) 111, 123
TscAI CASTG 3 cut(s) 226, 268, 353
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 75, 114
TspRI CASTG 3 cut(s) 226, 268, 353
VneI GTGCAC 1 cut(s) 349
VspI ATTAAT 1 cut(s) 111
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 2 cut(s) 29, 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.