Rorug03G0050200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0019395
Physical Location & Seq
Reverse (-)
3926739 .. 3928124
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0050200.1

Sequence Viewer

Length: 918 bp
ATGGTGGAGAACGATTATGAGTGGAATATTCCACTTTTGGAAGCTTTATTTACACCAATGGAAGTTGGCATAATTGCAAGTATCCCTCTAAGCCTTAGAGGAGCAGATGACAGCTTTGTGTGGCACTATGACAAGAGAGGAAACTATGGAGTGAGAAGTGGATACCATGTGGCCCGCCTTGATGATGGTAGATCTGACCGGGCTTCTAGCTCAAATGGGTCTTATGGAATTAATGCCACTTACTGGAAGATAATTTGGGGGGCCAACATCCCACCCAAAGTGCGTGTGTTTATTTGGAGACTACTCAGAGGCATTTTACCTACAAGAAGAGCTCTCTCCCATAAGGTTAGTCTTCTTGATAGTAATTGTCTTTTCTGTAATCATGCATTAGAAGATGGATTACACCTGTTCAGAGATTGTGATGTTACTACATGCTTTTGGGTGTGTACCAAATTGGGCCTTTTGGCCAAGAATGTGGCTGCTTCATGTGTGGAGGATTGGGTGTTGAACGTCATTGAAAAATTGGATGGTAATCAACGTTGTGCTTTTTTCATGGCACTCTGGGTCATATGGTCTGAAAGAAATAATGTCTTGTGGAACGAGAGTTTCTTCTGTGCCTCTAATGCGGCACAGTGGGCTAGTAAATTTCTTGAGGAATATCAGCAATTTCATGTGCATAGAAATGCGAAAGGTAGAAGGGAAAAGACCAAATGGCAGAACCCTCCTAGTGGGCGTCTGAAAGTGAATGTGGATGGGAGTTACCGGGCTGATTACGGTGATGGTGGAGTGGGAGTTGTGATACGTGATGAAAATGGTATGTGCTTGGCAGCTCTGGCTCGGTATTTCCCACATGCTTCATCTGCTTTACATATGGAGGCTGAAGCATGTAGGGCTGGGCTCTTATTGGCGATCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.53

Weight (kDa)

8.02

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 79 - 147 1.5e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 249 - 304 6.1e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461391
rosa_roxburghii Rroxscaffold_6G00418330 Rroxscaffold_6G00418620
rosa_rugosa Rorug03G0050200
rosa_samantha Rh3AG108100 Rh3BG112200 Rh3DG113800
rosa_wichuraiana Rw3G009220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 2 cut(s) 175, 626
AclI AACGTT 1 cut(s) 538
AclWI GGATC 1 cut(s) 904
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 900
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 243, 728
AgsI TTSAA 2 cut(s) 508, 518
AluBI AGCT 5 cut(s) 44, 114, 210, 332, 830
AluI AGCT 5 cut(s) 44, 114, 210, 332, 830
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 1 cut(s) 904
AoxI GGCC 4 cut(s) 171, 261, 457, 465
ApeKI GCWGC 2 cut(s) 479, 827
ApoI RAATTY 1 cut(s) 644
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 3 cut(s) 172, 261, 457
AsuC2I CCSGG 2 cut(s) 200, 764
AsuHPI GGTGA 1 cut(s) 788
BalI TGGCCA 1 cut(s) 467
BanII GRGCYC 2 cut(s) 334, 900
BarI GAAGNNNNNNTAC 2 cut(s) 384, 416
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 466, 839
BccI CCATC 5 cut(s) 179, 389, 521, 746, 773
BciVI GTATCC 2 cut(s) 92, 155
BcnI CCSGG 2 cut(s) 200, 764
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 3 cut(s) 207, 639, 726
BfuI GTATCC 2 cut(s) 92, 155
BglII AGATCT 1 cut(s) 191
BisI GCNGC 3 cut(s) 480, 627, 828
BlsI GCNGC 3 cut(s) 481, 628, 829
Bme1390I CCNGG 2 cut(s) 200, 764
BmgT120I GGNCC 3 cut(s) 172, 261, 457
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 2 cut(s) 200, 764
BpiI GAAGAC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 200, 764
BsaAI YACGTR 1 cut(s) 803
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 728
Bse1I ACTGG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 531
BseGI GGATG 3 cut(s) 267, 532, 757
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 243, 728
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 466, 839
BseYI CCCAGC 1 cut(s) 893
BshFI GGCC 4 cut(s) 173, 263, 459, 467
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 199, 763
BslI CCNNNNNNNGG 2 cut(s) 243, 728
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 4 cut(s) 173, 263, 459, 467
Bsp1286I GDGCHC 2 cut(s) 334, 900
Bsp143I GATC 2 cut(s) 191, 909
BspACI CCGC 2 cut(s) 175, 626
BspANI GGCC 4 cut(s) 173, 263, 459, 467
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 1 cut(s) 904
BspQI GCTCTTC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 248
BssMI GATC 2 cut(s) 191, 909
BssNI GRCGYC 1 cut(s) 733
Bst4CI ACNGT 2 cut(s) 633, 776
Bst6I CTCTTC 1 cut(s) 322
BstACI GRCGYC 1 cut(s) 733
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 3 cut(s) 89, 95, 305
BstF5I GGATG 3 cut(s) 267, 532, 757
BstKTI GATC 2 cut(s) 194, 912
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 2 cut(s) 191, 909
BstMWI GCNNNNNNNGC 5 cut(s) 623, 635, 833, 860, 890
BstNSI RCATGY 3 cut(s) 435, 854, 888
BstSCI CCNGG 2 cut(s) 198, 762
BstV1I GCAGC 2 cut(s) 466, 839
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 1 cut(s) 191
BsuI GTATCC 2 cut(s) 92, 155
BsuRI GGCC 4 cut(s) 173, 263, 459, 467
BtsCI GGATG 3 cut(s) 267, 532, 757
BtsIMutI CAGTG 1 cut(s) 638
Cac8I GCNNGC 1 cut(s) 175
Cfr13I GGNCC 3 cut(s) 172, 261, 457
CseI GACGC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 447
CviAII CATG 8 cut(s) 167, 383, 432, 486, 553, 671, 851, 885
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 3 cut(s) 89, 95, 305
DpnI GATC 2 cut(s) 193, 911
DpnII GATC 2 cut(s) 191, 909
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 2 cut(s) 334, 900
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 900
EcoICRI GAGCTC 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 2 cut(s) 334, 900
FaeI CATG 8 cut(s) 170, 386, 435, 489, 556, 674, 854, 888
FatI CATG 8 cut(s) 166, 382, 431, 485, 552, 670, 850, 884
FauI CCCGC 1 cut(s) 182
FauNDI CATATG 2 cut(s) 569, 870
Fnu4HI GCNGC 3 cut(s) 480, 627, 828
FokI GGATG 3 cut(s) 254, 539, 764
FriOI GRGCYC 2 cut(s) 334, 900
Fsp4HI GCNGC 3 cut(s) 480, 627, 828
FspBI CTAG 3 cut(s) 207, 639, 726
GluI GCNGC 3 cut(s) 480, 627, 828
GsaI CCCAGC 1 cut(s) 897
HaeIII GGCC 4 cut(s) 173, 263, 459, 467
HapII CCGG 2 cut(s) 199, 763
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 8 cut(s) 170, 386, 435, 489, 556, 674, 854, 888
HindIII AAGCTT 1 cut(s) 42
HpaII CCGG 2 cut(s) 199, 763
HphI GGTGA 1 cut(s) 788
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 5 cut(s) 196, 308, 413, 577, 738
Hpy188III TCNNGA 2 cut(s) 356, 650
Hpy8I GTNNAC 1 cut(s) 447
HpyAV CCTTC 1 cut(s) 690
HpyCH4III ACNGT 2 cut(s) 633, 776
HpyCH4IV ACGT 3 cut(s) 510, 538, 802
HpyCH4V TGCA 3 cut(s) 77, 386, 676
HpyF10VI GCNNNNNNNGC 5 cut(s) 623, 635, 833, 860, 890
HpyF3I CTNAG 3 cut(s) 89, 95, 305
HpySE526I ACGT 3 cut(s) 510, 538, 802
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 8 cut(s) 170, 386, 435, 489, 556, 674, 854, 888
Kzo9I GATC 2 cut(s) 191, 909
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 7 cut(s) 212, 229, 419, 547, 776, 818, 879
Lsp1109I GCAGC 2 cut(s) 466, 839
MaeI CTAG 3 cut(s) 207, 639, 726
MaeII ACGT 3 cut(s) 510, 538, 802
MaeIII GTNAC 2 cut(s) 424, 758
MalI GATC 2 cut(s) 193, 911
MboI GATC 2 cut(s) 191, 909
MboII GAAGA 5 cut(s) 259, 339, 344, 404, 601
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 334, 900
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 8 cut(s) 72, 228, 252, 364, 452, 521, 644, 665
MluNI TGGCCA 1 cut(s) 467
MnlI CCTC 9 cut(s) 92, 96, 131, 302, 487, 628, 646, 732, 868
Mox20I TGGCCA 1 cut(s) 467
Mph1103I ATGCAT 1 cut(s) 388
MscI TGGCCA 1 cut(s) 467
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 2 cut(s) 199, 763
MspR9I CCNGG 2 cut(s) 200, 764
MwoI GCNNNNNNNGC 5 cut(s) 623, 635, 833, 860, 890
NciI CCSGG 2 cut(s) 200, 764
NdeI CATATG 2 cut(s) 569, 870
NdeII GATC 2 cut(s) 191, 909
NlaIII CATG 8 cut(s) 170, 386, 435, 489, 556, 674, 854, 888
NlaIV GGNNCC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 3 cut(s) 435, 854, 888
PciSI GCTCTTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 3 cut(s) 481, 628, 829
Ppu21I YACGTR 1 cut(s) 803
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 334
Psp1406I AACGTT 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 893
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 3 cut(s) 172, 261, 457
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 681
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 480, 627, 828
Sau3AI GATC 2 cut(s) 191, 909
Sau96I GGNCC 3 cut(s) 172, 261, 457
ScrFI CCNGG 2 cut(s) 200, 764
SduI GDGCHC 2 cut(s) 334, 900
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 8 cut(s) 72, 228, 252, 364, 452, 521, 644, 665
SsiI CCGC 2 cut(s) 175, 626
SspI AATATT 1 cut(s) 28
SspMI CTAG 3 cut(s) 207, 639, 726
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 198, 762
TaaI ACNGT 2 cut(s) 633, 776
TaiI ACGT 3 cut(s) 513, 541, 805
TasI AATT 8 cut(s) 72, 228, 252, 364, 452, 521, 644, 665
TauI GCSGC 1 cut(s) 629
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 638
TseI GCWGC 2 cut(s) 479, 827
TspDTI ATGAA 5 cut(s) 474, 541, 659, 822, 846
TspRI CASTG 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 243
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 1 cut(s) 644
XceI RCATGY 3 cut(s) 435, 854, 888
XspI CTAG 3 cut(s) 207, 639, 726
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.