Rh3BG112200

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019395
Physical Location & Seq
Forward (+)
9169247 .. 9175955
6709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG112200.1

Sequence Viewer

Length: 378 bp
ATGACCACCAACACCACCGAAAAAGAGTCGACTGCAACAATTCCCGACGATAACAATGATGAAGTCATCATCTGGGGTTTGGGCGGACTTGGAAATTATGAAGGTCGAATTAATGATCTCTTGCATCTCTTGCCTCCCACTGGCCACCTGAGTGATAAGGTTGGTGACCCTGGAAGCCTCACTGTTATGCAAGATAGTGTACTTACAACTTGCGCGGAGGCCCAATACATAAGGAGGCACCACAGGCACGAGCCCAGAGAGAACCAGTGCACTTCGGCTCTGGTCAGGCATGTCAAAGCCCCTGTGCATCTGCTGGCGTGCATCTTTGACCTTTCAAGCAGTTTCGAAGAAGATGCAAAGCATATACTAACAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

5.33

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461391
rosa_roxburghii Rroxscaffold_6G00418330 Rroxscaffold_6G00418620
rosa_rugosa Rorug03G0050200
rosa_samantha Rh3AG108100 Rh3BG112200 Rh3DG113800
rosa_wichuraiana Rw3G009220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 29
AccII CGCG 1 cut(s) 215
AciI CCGC 2 cut(s) 84, 215
AcoI YGGCCR 1 cut(s) 142
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 336
AjnI CCWGG 1 cut(s) 169
AleI CACNNNNGTG 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 272
Alw44I GTGCAC 1 cut(s) 268
AoxI GGCC 2 cut(s) 142, 219
ApaLI GTGCAC 1 cut(s) 268
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 255
BauI CACGAG 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 4 cut(s) 133, 316, 330, 343
Bpu14I TTCGAA 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 145, 265
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 145, 265
BseSI GKGCMC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 2 cut(s) 144, 221
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 140
BsnI GGCC 2 cut(s) 144, 221
Bsp119I TTCGAA 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 255, 272
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 2 cut(s) 84, 215
BspANI GGCC 2 cut(s) 144, 221
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 145, 265
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 115
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 315, 319
BstDEI CTNAG 1 cut(s) 149
BstEII GGTNACC 1 cut(s) 164
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 130, 244
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 144, 221
BtsIMutI CAGTG 3 cut(s) 138, 180, 272
Cac8I GCNNGC 2 cut(s) 315, 319
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 290
CviJI RGCY 6 cut(s) 144, 177, 221, 253, 278, 299
CviKI_1 RGCY 6 cut(s) 144, 177, 221, 253, 278, 299
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 142
EciI GGCGGA 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 1 cut(s) 293
FaiI YATR 7 cut(s) 99, 188, 230, 291, 363, 365, 376
FatI CATG 1 cut(s) 289
FblI GTMKAC 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 255
GlaI GCGC 1 cut(s) 214
HaeIII GGCC 2 cut(s) 144, 221
HhaI GCGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 3 cut(s) 30, 200, 270
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 3 cut(s) 30, 200, 270
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 7 cut(s) 35, 124, 190, 270, 307, 321, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 244
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 115
LweI GCATC 4 cut(s) 133, 316, 330, 343
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 2 cut(s) 359, 362
MhlI GDGCHC 2 cut(s) 255, 272
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 3 cut(s) 39, 94, 108
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 4 cut(s) 144, 188, 211, 228
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 2 cut(s) 150, 185
Msp20I TGGCCA 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 130, 244
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 1 cut(s) 293
NspV TTCGAA 1 cut(s) 345
OliI CACNNNNGTG 1 cut(s) 150
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 2 cut(s) 150, 185
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 255, 272
SetI ASST 4 cut(s) 106, 150, 162, 333
SfaNI GCATC 4 cut(s) 133, 316, 330, 343
SfuI TTCGAA 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 150, 185
Sse9I AATT 3 cut(s) 39, 94, 108
SsiI CCGC 2 cut(s) 84, 215
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 3 cut(s) 29, 106, 345
TasI AATT 3 cut(s) 39, 94, 108
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 3 cut(s) 145, 187, 272
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 75, 114
TspRI CASTG 3 cut(s) 145, 187, 272
VneI GTGCAC 1 cut(s) 268
VspI ATTAAT 1 cut(s) 111
XceI RCATGY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.