Rh3AG108100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0019395
Physical Location & Seq
Forward (+)
9139521 .. 9141156
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG108100.1

Sequence Viewer

Length: 408 bp
ATGACCACCAACACCACCGAAAAAGAGTCGACTGCAGCAAATCCCGACGATAACAATGATGAAGTCATCATCTGGGGTTTGGGCGGACTTGGAAATTATGAAGGTCGAATTAATGGTACGTTTAACCTTGTGTTCCTTTCAAATGGGAGGCTTGGGAATGAATTATGTCTACACCGTTGGCTCGAAACTGCCATATATCTCTTGCATCTCTTGCCTCCCACTGGCCACCTGAGTGATAAGGAGGCACCACAGGCACGAGCCCAGAGAGAACCAGTGCACTTCGGCTCTGGTCAGGCATGTCAAAGCCCCTGTGCATCTGATTCGATTTCTCAGTTCTCTCGCGACAAATGCGCATATGAAATTCAGCAATCCAAATCCCAAATTCTCTTCTGTTACACGCAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

5.24

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461391
rosa_roxburghii Rroxscaffold_6G00418330 Rroxscaffold_6G00418620
rosa_rugosa Rorug03G0050200
rosa_samantha Rh3AG108100 Rh3BG112200 Rh3DG113800
rosa_wichuraiana Rw3G009220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 2 cut(s) 29, 169
AccII CGCG 1 cut(s) 342
AciI CCGC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 2 cut(s) 360, 381
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 279
Alw44I GTGCAC 1 cut(s) 275
AoxI GGCC 1 cut(s) 223
ApaLI GTGCAC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 360, 381
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 279
BalI TGGCCA 1 cut(s) 225
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BfaI CTAG 1 cut(s) 406
BfmI CTRYAG 1 cut(s) 33
BglII AGATCT 1 cut(s) 402
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 2 cut(s) 214, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 226, 272
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 221, 344
BseNI ACTGG 2 cut(s) 226, 272
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 262, 279
Bsp143I GATC 1 cut(s) 402
Bsp68I TCGCGA 1 cut(s) 342
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 222, 343
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 246
BspMAI CTGCAG 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 2 cut(s) 226, 272
BssMI GATC 1 cut(s) 402
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 230, 330
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 1 cut(s) 405
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 3 cut(s) 211, 251, 348
BstNSI RCATGY 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 219, 279
BtuMI TCGCGA 1 cut(s) 342
CfoI GCGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 117
CviAII CATG 1 cut(s) 297
CviJI RGCY 6 cut(s) 151, 181, 225, 260, 285, 306
CviKI_1 RGCY 6 cut(s) 151, 181, 225, 260, 285, 306
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 230, 330
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 1 cut(s) 300
FaiI YATR 7 cut(s) 99, 166, 194, 196, 298, 355, 357
FatI CATG 1 cut(s) 296
FauNDI CATATG 1 cut(s) 355
FblI GTMKAC 2 cut(s) 29, 169
Fnu4HI GCNGC 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 36
FspAI RTGCGCAY 1 cut(s) 352
FspBI CTAG 1 cut(s) 406
FspI TGCGCA 1 cut(s) 352
GlaI GCGC 1 cut(s) 352
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 225
HhaI GCGC 1 cut(s) 353
Hin1II CATG 1 cut(s) 300
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 26, 320
Hpy166II GTNNAC 3 cut(s) 30, 170, 277
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 44, 341
Hpy8I GTNNAC 3 cut(s) 30, 170, 277
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 4 cut(s) 35, 205, 277, 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 251, 348
HpyF3I CTNAG 2 cut(s) 230, 330
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 300
HspAI GCGC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 402
LpnPI CCDG 9 cut(s) 58, 207, 236, 242, 273, 275, 278, 285, 322
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 214, 323
MaeI CTAG 1 cut(s) 406
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 392
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 1 cut(s) 379
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 2 cut(s) 262, 279
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 5 cut(s) 94, 108, 161, 360, 381
MluNI TGGCCA 1 cut(s) 225
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 3 cut(s) 141, 225, 235
Mox20I TGGCCA 1 cut(s) 225
MscI TGGCCA 1 cut(s) 225
MseI TTAA 2 cut(s) 111, 123
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 225
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 211, 251, 348
NdeI CATATG 1 cut(s) 355
NdeII GATC 1 cut(s) 402
NlaIII CATG 1 cut(s) 300
NlaIV GGNNCC 1 cut(s) 246
NruI TCGCGA 1 cut(s) 342
NsbI TGCGCA 1 cut(s) 352
NspI RCATGY 1 cut(s) 300
OliI CACNNNNGTG 1 cut(s) 231
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 246
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 402
RruI TCGCGA 1 cut(s) 342
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 231
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 111, 123
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 402
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 2 cut(s) 262, 279
SetI ASST 4 cut(s) 106, 122, 129, 231
SfaNI GCATC 2 cut(s) 214, 323
SfcI CTRYAG 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 5 cut(s) 94, 108, 161, 360, 381
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 122
TaqI TCGA 4 cut(s) 29, 106, 183, 323
TasI AATT 5 cut(s) 94, 108, 161, 360, 381
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 111, 123
Tru9I TTAA 2 cut(s) 111, 123
TscAI CASTG 2 cut(s) 226, 279
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 4 cut(s) 75, 114, 174, 372
TspRI CASTG 2 cut(s) 226, 279
VneI GTGCAC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 2 cut(s) 360, 381
XceI RCATGY 1 cut(s) 300
XmiI GTMKAC 2 cut(s) 29, 169
XspI CTAG 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.