Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017065

Physical Location & Seq

Genomic Coordinates Reverse (-)

42120861 .. 42126021

Gene Structure 5161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAAGTCAAGATCTTGCGTATCCTTCTCACTGTTTTGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCGCTAATTTGGGGTGCATGCAACCATGCATTTCATCTTCATTGCATCCTAAAATGGGTAAATTCACAGACTTCTCAAGCGCATTGCCCCATGTGCCGGAGGGAGTGGCAGTTCAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006464 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009896 GO:0009987 GO:0010564 GO:0010638 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030071 GO:0031331 GO:0031461 GO:0032270 GO:0032436 GO:0032446 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051247 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0061630 GO:0061659 GO:0062033 GO:0065007 GO:0070647 GO:0071704 GO:0090068 GO:0097602 GO:0140096 GO:1901564 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903052 GO:1903364 GO:1905818 GO:1905820 GO:1990234 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

zf-ANAPC11

Protein Analysis

90

Amino Acids

10.33

Weight (kDa)

7.55

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	26 - 89	2.3e-35	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	27 - 83	5.7e-22	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05870 AT3G05870 AT3G05870
malus_domestica	MD04G1186000.v1.1 MD12G1199400.v1.1
prunus_persica	Prupe.2G083700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0458621
rosa_roxburghii	Rroxscaffold_6G00420900
rosa_rugosa	Rorug01G0032800
rosa_samantha	Rh1AG044800 Rh1BG044600 Rh1DG051900
rosa_wichuraiana	Rw3G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	205, 246
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	136
AloI	GAACNNNNNNTCC	1 cut(s)	245
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	94, 104
BciT130I	CCWGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	32
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	58, 204
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	136, 137
BsaXI	ACNNNNNCTCC	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 246
Bse3DI	GCAATG	2 cut(s)	190, 232
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	136, 137
BseGI	GGATG	4 cut(s)	73, 105, 148, 195
BseLI	CCNNNNNNNGG	2 cut(s)	205, 246
BseMI	GCAATG	2 cut(s)	190, 232
BseMII	CTCAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	205, 246
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	190, 232
BssECI	CCNNGG	2 cut(s)	136, 137
BssMI	GATC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	45, 152, 169
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	4 cut(s)	73, 105, 148, 195
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 243
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	3 cut(s)	47, 87, 171
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	32
BtsCI	GGATG	4 cut(s)	73, 105, 148, 195
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	3 cut(s)	45, 152, 169
CfoI	GCGC	1 cut(s)	232
CviAII	CATG	7 cut(s)	44, 57, 63, 84, 168, 176, 241
CviJI	RGCY	1 cut(s)	133
CviKI_1	RGCY	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	7 cut(s)	47, 60, 66, 87, 171, 179, 244
FaiI	YATR	7 cut(s)	45, 58, 64, 85, 169, 177, 242
FatI	CATG	7 cut(s)	43, 56, 62, 83, 167, 175, 240
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	4 cut(s)	80, 112, 155, 182
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	7 cut(s)	47, 60, 66, 87, 171, 179, 244
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	10, 74, 122
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	56, 167, 171, 179, 195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 243
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	7 cut(s)	47, 60, 66, 87, 171, 179, 244
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	5 cut(s)	59, 123, 135, 150, 260
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	58, 204
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	2 cut(s)	156, 211
MnlI	CCTC	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	61
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	53, 243
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	7 cut(s)	47, 60, 66, 87, 171, 179, 244
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	3 cut(s)	47, 87, 171
PaeI	GCATGC	2 cut(s)	47, 171
PasI	CCCWGGG	1 cut(s)	137
PciI	ACATGT	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	55
PscI	ACATGT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	61
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	58, 204
SmiMI	CAYNNNNRTG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SphI	GCATGC	2 cut(s)	47, 171
Sse9I	AATT	2 cut(s)	156, 211
SsiI	CCGC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	34
TasI	AATT	2 cut(s)	156, 211
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	17, 173, 179
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	3 cut(s)	47, 87, 171
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.