Rh1BG044600

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017065
Physical Location & Seq
Forward (+)
5893677 .. 5911266
17590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG044600.1

Sequence Viewer

Length: 348 bp
ATGGTGAAGCGAATCGGAAATCGGAGTCGTTGCCACGTGGTCCCCTGCCGGTTTTCTTGGAGCGGTTTGAAGAGTCTTGAGGATGGGACTGTGTTGAGGACTAATCTGCAAACGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGGAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAATTTGGGGTGCATGCAACCATGCATTTCATCTTCATTGCATCCTAAAATGGGTAAATTCACAGAATTCTCAAGCACATTGCCCCATGTGCCGGAGGGAGTGGCAGTTCAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

115

Amino Acids

13.23

Weight (kDa)

8.34

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 51 - 114 2.3e-33 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1 PF12678 52 - 108 6.5e-20 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05870 AT3G05870 AT3G05870
malus_domestica MD04G1186000.v1.1 MD12G1199400.v1.1
prunus_persica Prupe.2G083700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0458621
rosa_roxburghii Rroxscaffold_6G00420900
rosa_rugosa Rorug01G0032800
rosa_samantha Rh1AG044800 Rh1BG044600 Rh1DG051900
rosa_wichuraiana Rw3G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 63
AciI CCGC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 286, 295
AcvI CACGTG 1 cut(s) 37
AfiI CCNNNNNNNGG 2 cut(s) 280, 321
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 2 cut(s) 70, 340
AjnI CCWGG 1 cut(s) 211
AloI GAACNNNNNNTCC 1 cut(s) 320
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 286, 295
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 40
BbrPI CACGTG 1 cut(s) 37
BbvI GCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 77, 169, 179
BciT130I CCWGG 1 cut(s) 213
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 2 cut(s) 133, 279
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 98, 285
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 211, 212
BsaXI ACNNNNNCTCC 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 321
Bse118I RCCGGY 1 cut(s) 48
Bse3DI GCAATG 2 cut(s) 265, 307
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 211, 212
BseGI GGATG 5 cut(s) 88, 148, 180, 223, 270
BseLI CCNNNNNNNGG 2 cut(s) 280, 321
BseMI GCAATG 2 cut(s) 265, 307
BseMII CTCAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 49, 322
BslFI GGGAC 2 cut(s) 26, 100
BslI CCNNNNNNNGG 2 cut(s) 280, 321
BsmFI GGGAC 2 cut(s) 26, 100
BspACI CCGC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 42
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 265, 307
BsrFI RCCGGY 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 211, 212
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 120, 244
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 5 cut(s) 88, 148, 180, 223, 270
BstMWI GCNNNNNNNGC 3 cut(s) 115, 128, 318
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 3 cut(s) 122, 162, 246
BstSCI CCNGG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 234
BtsCI GGATG 5 cut(s) 88, 148, 180, 223, 270
Cac8I GCNNGC 2 cut(s) 120, 244
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 40
CviAII CATG 7 cut(s) 119, 132, 138, 159, 243, 251, 316
CviJI RGCY 1 cut(s) 208
CviKI_1 RGCY 1 cut(s) 208
DdeI CTNAG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 40
Eco72I CACGTG 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 256
FaeI CATG 7 cut(s) 122, 135, 141, 162, 246, 254, 319
FaiI YATR 7 cut(s) 120, 133, 139, 160, 244, 252, 317
FaqI GGGAC 2 cut(s) 26, 100
FatI CATG 7 cut(s) 118, 131, 137, 158, 242, 250, 315
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 5 cut(s) 95, 155, 187, 230, 257
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HapII CCGG 2 cut(s) 49, 322
Hin1II CATG 7 cut(s) 122, 135, 141, 162, 246, 254, 319
HinfI GANTC 3 cut(s) 12, 25, 73
HpaII CCGG 2 cut(s) 49, 322
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 17, 24
Hpy188III TCNNGA 3 cut(s) 77, 149, 197
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 36, 113
HpyCH4V TGCA 6 cut(s) 109, 131, 242, 246, 254, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 128, 318
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 2 cut(s) 36, 113
Hsp92II CATG 7 cut(s) 122, 135, 141, 162, 246, 254, 319
LmnI GCTCC 2 cut(s) 60, 213
LpnPI CCDG 7 cut(s) 58, 62, 134, 198, 210, 225, 335
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 133, 279
MaeII ACGT 2 cut(s) 36, 113
MbiI CCGCTC 1 cut(s) 63
MboII GAAGA 2 cut(s) 82, 254
MluCI AATT 3 cut(s) 231, 286, 295
MlyI GAGTC 2 cut(s) 34, 82
MnlI CCTC 4 cut(s) 73, 90, 165, 318
Mph1103I ATGCAT 1 cut(s) 256
MslI CAYNNNNRTG 1 cut(s) 136
MspI CCGG 2 cut(s) 49, 322
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 115, 128, 318
NlaIII CATG 7 cut(s) 122, 135, 141, 162, 246, 254, 319
NlaIV GGNNCC 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 3 cut(s) 122, 162, 246
PaeI GCATGC 2 cut(s) 122, 246
PasI CCCWGGG 1 cut(s) 212
PciI ACATGT 1 cut(s) 158
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 2 cut(s) 33, 81
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
PpsI GAGTC 2 cut(s) 33, 81
Ppu21I YACGTR 1 cut(s) 37
PscI ACATGT 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 211
PspCI CACGTG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 136
SatI GCNGC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 34, 82
ScrFI CCNGG 1 cut(s) 213
SetI ASST 3 cut(s) 39, 116, 210
SfaNI GCATC 2 cut(s) 133, 279
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 77, 300
SmoI CTYRAG 2 cut(s) 77, 300
SphI GCATGC 2 cut(s) 122, 246
Sse9I AATT 3 cut(s) 231, 286, 295
SsiI CCGC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 39, 116
TasI AATT 3 cut(s) 231, 286, 295
TfiI GAWTC 1 cut(s) 12
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 248, 254
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 2 cut(s) 286, 295
XceI RCATGY 3 cut(s) 122, 162, 246
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.