Rorug01G0032800

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017065
Physical Location & Seq
Reverse (-)
5584253 .. 5587477
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0032800.1

Sequence Viewer

Length: 1083 bp
ATGGCTGATAAGATTCAGACTTCACGAGCCACTATAAGAGAATATATTGGAAAAGATGATCCATCTGAGCTATTGATCTATGATTTTGATAGCATATTAGTTGCTACAAACAATTTCAGTCTTGCAAACAAACTCGAAAAAGGAGGATTTGGCCCAGTTTATAAGGGTAAGCTACTAGAAGGGAAGGAAATAGCAGTAAAAAGACTGTCTAGTAGTTCAGGCCAAGGCAAAGAAGAGTTCAAGAATGAGACTTTGTTGATCTCCAATCTTCAACATAAAAATTTTGTTAGACTCATGGGTTGCTGTGTTAAAGGGGATGAGAAGTTACTGATTTATGAGTTCATGCCCAACAGAAGCTTGGATACTTTTCTATTCGATCCAATGAGAAGAGCAGTGTTGGATTGGCCTTGCCGCTTCAATATTATTCAGGGCATAGCTATAGGGCTTCTTTATCTCCATCACGATTCCTGTTTGGAAGTAATACATAGAGATCTGAAAATTAGCGACATTCTCTTGGATGAGAAAATGAACGCAAAAATTTCAGATTTTGGATTGGCACGCATTGTTCAAGAGACACCAGATTTAGAAAATATTGAGAGGGTTGTGGGAACGCTTGGTTATATGTCTCCGGAGTATGCCATGGAGATTATTAGCGGGAAGAAGAATACCAGCTTCTGTTTACATGACCAACAGCAAGGCTTTCTAGCCTATGCATGGAGCTTATGGAATGAAGGCAGTGGATTGGCACTGGTTGATGAAGTATTGGAGCAAAGCTTTGAAGAGTGGCTGATCATTGGTGTGGGAATAGTGCACTCCTTTGCTGATTGTTTGATGTTAGGTTATGAAGGTGACGACAGGCCACATGTGAGAAGTGGAATCTTGATTGGGAGTCTCACCAGAAGAATTAATGACCTCAAGTTGCTGCTGATAGGGCCAATAAACAAGGACTGCAAGACTATTTTAAAGTCTTCTGCCGATGACTCTCAGGGTACCATTTTCTTAATACAGAAAACAAGTGTCGTTTCTGTGACAATGAAGTTTACTAGTATATATGGGCAATCCTCCAAAGACTTCTGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

360

Amino Acids

40.45

Weight (kDa)

5.5

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 41 - 214 2.9e-32 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 42 - 212 6.6e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05870 AT3G05870 AT3G05870
malus_domestica MD04G1186000.v1.1 MD12G1199400.v1.1
prunus_persica Prupe.2G083700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0458621
rosa_roxburghii Rroxscaffold_6G00420900
rosa_rugosa Rorug01G0032800
rosa_samantha Rh1AG044800 Rh1BG044600 Rh1DG051900
rosa_wichuraiana Rw3G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
Acc65I GGTACC 1 cut(s) 989
AccB1I GGYRCC 1 cut(s) 989
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 2 cut(s) 412, 654
AclWI GGATC 2 cut(s) 53, 371
AcsI RAATTY 2 cut(s) 280, 537
AfaI GTAC 1 cut(s) 991
AfiI CCNNNNNNNGG 1 cut(s) 714
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 5 cut(s) 241, 272, 418, 569, 779
AhlI ACTAGT 1 cut(s) 1043
AluBI AGCT 7 cut(s) 70, 172, 357, 437, 672, 720, 774
AluI AGCT 7 cut(s) 70, 172, 357, 437, 672, 720, 774
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 4 cut(s) 242, 566, 630, 896
Alw44I GTGCAC 1 cut(s) 809
AlwI GGATC 2 cut(s) 53, 371
AlwNI CAGNNNCTG 1 cut(s) 675
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 5 cut(s) 151, 220, 404, 857, 932
ApaLI GTGCAC 1 cut(s) 809
ApeKI GCWGC 1 cut(s) 922
ApoI RAATTY 2 cut(s) 280, 537
AseI ATTAAT 1 cut(s) 906
Asp718I GGTACC 1 cut(s) 989
AspS9I GGNCC 2 cut(s) 152, 932
AsuHPI GGTGA 2 cut(s) 860, 886
BaeGI GKGCMC 1 cut(s) 813
BanI GGYRCC 1 cut(s) 989
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 960
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 1 cut(s) 909
BccI CCATC 2 cut(s) 70, 465
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 4 cut(s) 242, 566, 630, 896
BcuI ACTAGT 1 cut(s) 1043
BfaI CTAG 4 cut(s) 176, 210, 704, 1044
BfmI CTRYAG 1 cut(s) 438
BfuI GTATCC 1 cut(s) 355
BglII AGATCT 1 cut(s) 490
BisI GCNGC 2 cut(s) 412, 923
BlsI GCNGC 2 cut(s) 413, 924
BmgT120I GGNCC 2 cut(s) 152, 932
BmiI GGNNCC 1 cut(s) 991
BmrI ACTGGG 1 cut(s) 149
BmuI ACTGGG 1 cut(s) 149
BoxI GACNNNNGTC 1 cut(s) 1074
BpiI GAAGAC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 899
BsaJI CCNNGG 2 cut(s) 223, 639
BsaWI WCCGGW 1 cut(s) 628
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse1I ACTGG 2 cut(s) 155, 753
BseAI TCCGGA 1 cut(s) 628
BseDI CCNNGG 2 cut(s) 223, 639
BseGI GGATG 2 cut(s) 322, 523
BseLI CCNNNNNNNGG 1 cut(s) 714
BseMII CTCAG 2 cut(s) 57, 998
BseNI ACTGG 2 cut(s) 155, 753
BseSI GKGCMC 1 cut(s) 813
BseXI GCAGC 1 cut(s) 909
BshFI GGCC 5 cut(s) 153, 222, 406, 859, 934
BshNI GGYRCC 1 cut(s) 989
BsiHKAI GWGCWC 1 cut(s) 813
BsiSI CCGG 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 4 cut(s) 242, 566, 630, 896
BsnI GGCC 5 cut(s) 153, 222, 406, 859, 934
Bsp1286I GDGCHC 1 cut(s) 813
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 6 cut(s) 58, 75, 258, 376, 490, 789
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 2 cut(s) 412, 654
BspANI GGCC 5 cut(s) 153, 222, 406, 859, 934
BspCNI CTCAG 2 cut(s) 58, 997
BspEI TCCGGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 991
BspPI GGATC 2 cut(s) 53, 371
BspQI GCTCTTC 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 989
BsrI ACTGG 2 cut(s) 155, 753
BssECI CCNNGG 2 cut(s) 223, 639
BssMI GATC 6 cut(s) 58, 75, 258, 376, 490, 789
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 2 cut(s) 223, 639
Bst2BI CACGAG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 3 cut(s) 228, 382, 774
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 2 cut(s) 66, 984
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 2 cut(s) 322, 523
BstKTI GATC 6 cut(s) 61, 78, 261, 379, 493, 792
BstMAI GTCTC 4 cut(s) 242, 566, 630, 896
BstMBI GATC 6 cut(s) 58, 75, 258, 376, 490, 789
BstMWI GCNNNNNNNGC 1 cut(s) 931
BstNSI RCATGY 1 cut(s) 866
BstPAI GACNNNNGTC 1 cut(s) 1074
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 813
BstV1I GCAGC 1 cut(s) 909
BstV2I GAAGAC 1 cut(s) 960
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 5 cut(s) 153, 222, 406, 859, 934
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 2 cut(s) 322, 523
BtsI GCAGTG 2 cut(s) 399, 742
BtsIMutI CAGTG 3 cut(s) 399, 742, 746
Cac8I GCNNGC 1 cut(s) 559
CaiI CAGNNNCTG 1 cut(s) 675
Cfr13I GGNCC 2 cut(s) 152, 932
Csp6I GTAC 1 cut(s) 990
CviAII CATG 6 cut(s) 295, 343, 640, 683, 714, 863
CviQI GTAC 1 cut(s) 990
DdeI CTNAG 2 cut(s) 66, 984
DpnI GATC 6 cut(s) 60, 77, 260, 378, 492, 791
DpnII GATC 6 cut(s) 58, 75, 258, 376, 490, 789
DraI TTTAAA 1 cut(s) 963
Eam1104I CTCTTC 3 cut(s) 228, 382, 774
EarI CTCTTC 3 cut(s) 228, 382, 774
Eco130I CCWWGG 2 cut(s) 223, 639
EcoT14I CCWWGG 2 cut(s) 223, 639
EcoT22I ATGCAT 1 cut(s) 715
ErhI CCWWGG 2 cut(s) 223, 639
FaeI CATG 6 cut(s) 298, 346, 643, 686, 717, 866
FatI CATG 6 cut(s) 294, 342, 639, 682, 713, 862
FauI CCCGC 1 cut(s) 647
FbaI TGATCA 1 cut(s) 789
Fnu4HI GCNGC 2 cut(s) 412, 923
FokI GGATG 2 cut(s) 329, 530
Fsp4HI GCNGC 2 cut(s) 412, 923
FspBI CTAG 4 cut(s) 176, 210, 704, 1044
GluI GCNGC 2 cut(s) 412, 923
HaeIII GGCC 5 cut(s) 153, 222, 406, 859, 934
HapII CCGG 1 cut(s) 629
Hin1II CATG 6 cut(s) 298, 346, 643, 686, 717, 866
HindIII AAGCTT 2 cut(s) 355, 772
HinfI GANTC 6 cut(s) 13, 291, 464, 876, 889, 980
HpaII CCGG 1 cut(s) 629
HphI GGTGA 2 cut(s) 860, 886
Hpy166II GTNNAC 3 cut(s) 680, 811, 1041
Hpy188I TCNGA 4 cut(s) 18, 67, 495, 544
Hpy188III TCNNGA 6 cut(s) 24, 241, 461, 569, 629, 880
Hpy8I GTNNAC 3 cut(s) 680, 811, 1041
HpyAV CCTTC 4 cut(s) 173, 178, 725, 839
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 125, 713, 811, 951
HpyF10VI GCNNNNNNNGC 1 cut(s) 931
HpyF3I CTNAG 2 cut(s) 66, 984
Hsp92II CATG 6 cut(s) 298, 346, 643, 686, 717, 866
Kpn2I TCCGGA 1 cut(s) 628
KpnI GGTACC 1 cut(s) 993
Ksp22I TGATCA 1 cut(s) 789
Kzo9I GATC 6 cut(s) 58, 75, 258, 376, 490, 789
LguI GCTCTTC 1 cut(s) 382
LmnI GCTCC 2 cut(s) 717, 766
Lsp1109I GCAGC 1 cut(s) 909
MaeI CTAG 4 cut(s) 176, 210, 704, 1044
MaeIII GTNAC 3 cut(s) 324, 848, 1027
MalI GATC 6 cut(s) 60, 77, 260, 378, 492, 791
MboI GATC 6 cut(s) 58, 75, 258, 376, 490, 789
MboII GAAGA 8 cut(s) 245, 260, 399, 670, 673, 791, 912, 960
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 813
MluCI AATT 5 cut(s) 112, 280, 498, 537, 903
MlyI GAGTC 3 cut(s) 285, 898, 974
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 137, 591, 923, 1072
Mph1103I ATGCAT 1 cut(s) 715
MroI TCCGGA 1 cut(s) 628
MseI TTAA 4 cut(s) 309, 906, 962, 1001
MslI CAYNNNNRTG 1 cut(s) 797
MspI CCGG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 931
NcoI CCATGG 1 cut(s) 639
NdeII GATC 6 cut(s) 58, 75, 258, 376, 490, 789
NlaIII CATG 6 cut(s) 298, 346, 643, 686, 717, 866
NlaIV GGNNCC 1 cut(s) 991
NmuCI GTSAC 2 cut(s) 848, 1027
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 866
PciI ACATGT 1 cut(s) 862
PciSI GCTCTTC 1 cut(s) 382
PfeI GAWTC 3 cut(s) 13, 464, 876
PkrI GCNGC 2 cut(s) 413, 924
PleI GAGTC 3 cut(s) 285, 897, 974
PpsI GAGTC 3 cut(s) 285, 897, 974
PscI ACATGT 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 1074
PshBI ATTAAT 1 cut(s) 906
PsiI TTATAA 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 991
PspPI GGNCC 2 cut(s) 152, 932
PstNI CAGNNNCTG 1 cut(s) 675
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 1 cut(s) 991
RsaNI GTAC 1 cut(s) 990
RseI CAYNNNNRTG 1 cut(s) 797
SapI GCTCTTC 1 cut(s) 382
SaqAI TTAA 4 cut(s) 309, 906, 962, 1001
SatI GCNGC 2 cut(s) 412, 923
Sau3AI GATC 6 cut(s) 58, 75, 258, 376, 490, 789
Sau96I GGNCC 2 cut(s) 152, 932
SchI GAGTC 3 cut(s) 285, 898, 974
SduI GDGCHC 1 cut(s) 813
SfcI CTRYAG 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SpeI ACTAGT 1 cut(s) 1043
Sse9I AATT 5 cut(s) 112, 280, 498, 537, 903
SsiI CCGC 2 cut(s) 412, 654
SspI AATATT 2 cut(s) 421, 592
SspMI CTAG 4 cut(s) 176, 210, 704, 1044
StyI CCWWGG 2 cut(s) 223, 639
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 135, 375
TasI AATT 5 cut(s) 112, 280, 498, 537, 903
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 3 cut(s) 13, 464, 876
Tru1I TTAA 4 cut(s) 309, 906, 962, 1001
Tru9I TTAA 4 cut(s) 309, 906, 962, 1001
TscAI CASTG 3 cut(s) 399, 742, 753
TseFI GTSAC 2 cut(s) 848, 1027
TseI GCWGC 1 cut(s) 922
Tsp45I GTSAC 2 cut(s) 848, 1027
TspDTI ATGAA 6 cut(s) 331, 542, 744, 771, 858, 1049
TspRI CASTG 3 cut(s) 399, 742, 753
VneI GTGCAC 1 cut(s) 809
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 2 cut(s) 280, 537
XceI RCATGY 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 4 cut(s) 176, 210, 704, 1044
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.