Zein-binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08800 AT1G08800 AT1G08800 AT1G08800 |
| fragaria_vesca | FvH4_6g02500 FvH4_6g02500 FvH4_6g02500 FvH4_6g02500 |
| malus_domestica | MD04G1227500.v1.1 MD12G1244200.v1.1 |
| prunus_persica | Prupe.6G346700_v2.0.a1 Prupe.6G346700_v2.0.a1 |
| pyrus_communis | pycom04g20100 pycom12g22390 |
| rosa_chinensis | RchiOBHm_Chr3g0450371 |
| rosa_laevigata | RLG00000025734 |
| rosa_multiflora | Rmu_sc0000330.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00428100 |
| rosa_rugosa | Rorug02G0627200 Rorug02G0627200 |
| rosa_samantha | Rh3AG027700 Rh3BG028300 Rh3CG027100 Rh3DG028200 |
| rosa_wichuraiana | Rw3G002160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1506 |
| Acc36I | ACCTGC | 1 cut(s) | 995 |
| AccI | GTMKAC | 1 cut(s) | 23 |
| AciI | CCGC | 3 cut(s) | 237, 497, 1553 |
| AclWI | GGATC | 3 cut(s) | 345, 809, 1088 |
| AcsI | RAATTY | 3 cut(s) | 501, 514, 1388 |
| AcuI | CTGAAG | 3 cut(s) | 807, 945, 1446 |
| AfaI | GTAC | 5 cut(s) | 438, 1086, 1168, 1431, 1548 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 440, 575 |
| AflII | CTTAAG | 1 cut(s) | 950 |
| AgsI | TTSAA | 7 cut(s) | 599, 759, 785, 1222, 1316, 1455, 1581 |
| AjnI | CCWGG | 3 cut(s) | 10, 211, 1540 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1548, 1580 |
| Alw21I | GWGCWC | 4 cut(s) | 179, 283, 475, 699 |
| Alw26I | GTCTC | 2 cut(s) | 77, 356 |
| Alw44I | GTGCAC | 1 cut(s) | 279 |
| AlwI | GGATC | 3 cut(s) | 345, 809, 1088 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 968, 1382 |
| Ama87I | CYCGRG | 2 cut(s) | 74, 440 |
| AoxI | GGCC | 2 cut(s) | 445, 1409 |
| ApaLI | GTGCAC | 1 cut(s) | 279 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ApoI | RAATTY | 3 cut(s) | 501, 514, 1388 |
| AseI | ATTAAT | 1 cut(s) | 345 |
| AspA2I | CCTAGG | 1 cut(s) | 1159 |
| AspS9I | GGNCC | 5 cut(s) | 50, 430, 445, 1031, 1409 |
| AsuHPI | GGTGA | 1 cut(s) | 1508 |
| AvaI | CYCGRG | 2 cut(s) | 74, 440 |
| AvaII | GGWCC | 3 cut(s) | 50, 430, 1031 |
| AvrII | CCTAGG | 1 cut(s) | 1159 |
| BaeGI | GKGCMC | 1 cut(s) | 283 |
| BanII | GRGCYC | 3 cut(s) | 570, 669, 699 |
| BauI | CACGAG | 2 cut(s) | 897, 1350 |
| BbsI | GAAGAC | 1 cut(s) | 1537 |
| Bbv12I | GWGCWC | 4 cut(s) | 179, 283, 475, 699 |
| BccI | CCATC | 4 cut(s) | 634, 1022, 1108, 1294 |
| BciT130I | CCWGG | 3 cut(s) | 12, 213, 1542 |
| BciVI | GTATCC | 2 cut(s) | 680, 932 |
| BclI | TGATCA | 3 cut(s) | 187, 1360, 1465 |
| BcoDI | GTCTC | 2 cut(s) | 77, 356 |
| BfaI | CTAG | 4 cut(s) | 69, 630, 1160, 1230 |
| BfmI | CTRYAG | 2 cut(s) | 1173, 1182 |
| BfrI | CTTAAG | 1 cut(s) | 950 |
| BfuAI | ACCTGC | 1 cut(s) | 995 |
| BfuI | GTATCC | 2 cut(s) | 680, 932 |
| BglII | AGATCT | 1 cut(s) | 1489 |
| BisI | GCNGC | 3 cut(s) | 6, 238, 497 |
| BlnI | CCTAGG | 1 cut(s) | 1159 |
| BlsI | GCNGC | 3 cut(s) | 7, 239, 498 |
| BmcAI | AGTACT | 2 cut(s) | 438, 1086 |
| Bme1390I | CCNGG | 3 cut(s) | 12, 213, 1542 |
| Bme18I | GGWCC | 3 cut(s) | 50, 430, 1031 |
| BmeT110I | CYCGRG | 2 cut(s) | 74, 440 |
| BmgT120I | GGNCC | 5 cut(s) | 50, 430, 445, 1031, 1409 |
| BmiI | GGNNCC | 5 cut(s) | 51, 432, 446, 668, 1033 |
| BmrFI | CCNGG | 3 cut(s) | 12, 213, 1542 |
| BmrI | ACTGGG | 4 cut(s) | 157, 428, 672, 1442 |
| BmsI | GCATC | 5 cut(s) | 97, 736, 857, 1187, 1489 |
| BmuI | ACTGGG | 4 cut(s) | 157, 428, 672, 1442 |
| BpiI | GAAGAC | 1 cut(s) | 1537 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 631, 663, 1265, 1297 |
| BpmI | CTGGAG | 1 cut(s) | 163 |
| BpuEI | CTTGAG | 4 cut(s) | 584, 1038, 1065, 1292 |
| BsaJI | CCNNGG | 6 cut(s) | 10, 11, 44, 880, 1035, 1159 |
| BsaWI | WCCGGW | 1 cut(s) | 802 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 153, 183, 784, 814 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 440, 575 |
| Bse1I | ACTGG | 4 cut(s) | 152, 434, 667, 1448 |
| Bse3DI | GCAATG | 3 cut(s) | 208, 496, 1305 |
| BseBI | CCWGG | 3 cut(s) | 12, 213, 1542 |
| BseDI | CCNNGG | 6 cut(s) | 10, 11, 44, 880, 1035, 1159 |
| BseGI | GGATG | 3 cut(s) | 112, 751, 1033 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 440, 575 |
| BseMI | GCAATG | 3 cut(s) | 208, 496, 1305 |
| BseMII | CTCAG | 4 cut(s) | 351, 498, 543, 596 |
| BseNI | ACTGG | 4 cut(s) | 152, 434, 667, 1448 |
| BseSI | GKGCMC | 1 cut(s) | 283 |
| BshFI | GGCC | 2 cut(s) | 447, 1411 |
| BsiHKAI | GWGCWC | 4 cut(s) | 179, 283, 475, 699 |
| BsiHKCI | CYCGRG | 2 cut(s) | 74, 440 |
| BsiSI | CCGG | 3 cut(s) | 53, 465, 803 |
| BslFI | GGGAC | 5 cut(s) | 28, 239, 862, 1017, 1141 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 440, 575 |
| BsmAI | GTCTC | 2 cut(s) | 77, 356 |
| BsmFI | GGGAC | 5 cut(s) | 28, 239, 862, 1017, 1141 |
| BsmI | GAATGC | 1 cut(s) | 1282 |
| BsnI | GGCC | 2 cut(s) | 447, 1411 |
| BsoBI | CYCGRG | 2 cut(s) | 74, 440 |
| Bsp1286I | GDGCHC | 6 cut(s) | 179, 283, 475, 570, 669, 699 |
| Bsp19I | CCATGG | 1 cut(s) | 880 |
| BspACI | CCGC | 3 cut(s) | 237, 497, 1553 |
| BspANI | GGCC | 2 cut(s) | 447, 1411 |
| BspCNI | CTCAG | 4 cut(s) | 352, 499, 544, 597 |
| BspHI | TCATGA | 2 cut(s) | 763, 1018 |
| BspLI | GGNNCC | 5 cut(s) | 51, 432, 446, 668, 1033 |
| BspMAI | CTGCAG | 1 cut(s) | 1186 |
| BspMI | ACCTGC | 1 cut(s) | 995 |
| BspPI | GGATC | 3 cut(s) | 345, 809, 1088 |
| BspTI | CTTAAG | 1 cut(s) | 950 |
| BsrDI | GCAATG | 3 cut(s) | 208, 496, 1305 |
| BsrI | ACTGG | 4 cut(s) | 152, 434, 667, 1448 |
| BssECI | CCNNGG | 6 cut(s) | 10, 11, 44, 880, 1035, 1159 |
| BssSI | CACGAG | 2 cut(s) | 897, 1350 |
| BssT1I | CCWWGG | 4 cut(s) | 44, 880, 1035, 1159 |
| Bst2BI | CACGAG | 2 cut(s) | 897, 1350 |
| Bst2UI | CCWGG | 3 cut(s) | 12, 213, 1542 |
| Bst6I | CTCTTC | 1 cut(s) | 1582 |
| BstAFI | CTTAAG | 1 cut(s) | 950 |
| BstDEI | CTNAG | 7 cut(s) | 265, 360, 408, 507, 552, 605, 1333 |
| BstDSI | CCRYGG | 1 cut(s) | 880 |
| BstF5I | GGATG | 3 cut(s) | 112, 751, 1033 |
| BstMAI | GTCTC | 2 cut(s) | 77, 356 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 174, 465, 1304, 1373 |
| BstNI | CCWGG | 3 cut(s) | 12, 213, 1542 |
| BstSCI | CCNGG | 3 cut(s) | 10, 211, 1540 |
| BstSFI | CTRYAG | 2 cut(s) | 1173, 1182 |
| BstSLI | GKGCMC | 1 cut(s) | 283 |
| BstV2I | GAAGAC | 1 cut(s) | 1537 |
| BstX2I | RGATCY | 4 cut(s) | 350, 814, 1093, 1489 |
| BstYI | RGATCY | 4 cut(s) | 350, 814, 1093, 1489 |
| BsuI | GTATCC | 2 cut(s) | 680, 932 |
| BsuRI | GGCC | 2 cut(s) | 447, 1411 |
| BtgI | CCRYGG | 1 cut(s) | 880 |
| BtsCI | GGATG | 3 cut(s) | 112, 751, 1033 |
| BtsIMutI | CAGTG | 4 cut(s) | 642, 711, 831, 1461 |
| BveI | ACCTGC | 1 cut(s) | 995 |
| CaiI | CAGNNNCTG | 2 cut(s) | 968, 1382 |
| CciI | TCATGA | 2 cut(s) | 763, 1018 |
| Cfr13I | GGNCC | 5 cut(s) | 50, 430, 445, 1031, 1409 |
| CsiI | ACCWGGT | 1 cut(s) | 211 |
| Csp6I | GTAC | 5 cut(s) | 437, 1085, 1167, 1430, 1547 |
| CviQI | GTAC | 5 cut(s) | 437, 1085, 1167, 1430, 1547 |
| DdeI | CTNAG | 7 cut(s) | 265, 360, 408, 507, 552, 605, 1333 |
| Eam1104I | CTCTTC | 1 cut(s) | 1582 |
| EarI | CTCTTC | 1 cut(s) | 1582 |
| Ecl136II | GAGCTC | 1 cut(s) | 697 |
| Eco130I | CCWWGG | 4 cut(s) | 44, 880, 1035, 1159 |
| Eco24I | GRGCYC | 3 cut(s) | 570, 669, 699 |
| Eco47I | GGWCC | 3 cut(s) | 50, 430, 1031 |
| Eco53kI | GAGCTC | 1 cut(s) | 697 |
| Eco57I | CTGAAG | 3 cut(s) | 807, 945, 1446 |
| Eco88I | CYCGRG | 2 cut(s) | 74, 440 |
| EcoICRI | GAGCTC | 1 cut(s) | 697 |
| EcoO109I | RGGNCCY | 1 cut(s) | 430 |
| EcoRI | GAATTC | 1 cut(s) | 514 |
| EcoRII | CCWGG | 3 cut(s) | 10, 211, 1540 |
| EcoT14I | CCWWGG | 4 cut(s) | 44, 880, 1035, 1159 |
| EcoT38I | GRGCYC | 3 cut(s) | 570, 669, 699 |
| ErhI | CCWWGG | 4 cut(s) | 44, 880, 1035, 1159 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1296, 1328, 1316, 1348 |
| FaqI | GGGAC | 5 cut(s) | 28, 239, 862, 1017, 1141 |
| FauNDI | CATATG | 2 cut(s) | 121, 1369 |
| FbaI | TGATCA | 3 cut(s) | 187, 1360, 1465 |
| FblI | GTMKAC | 1 cut(s) | 23 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 238, 497 |
| FokI | GGATG | 3 cut(s) | 119, 758, 1040 |
| FriOI | GRGCYC | 3 cut(s) | 570, 669, 699 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 238, 497 |
| FspBI | CTAG | 4 cut(s) | 69, 630, 1160, 1230 |
| GluI | GCNGC | 3 cut(s) | 6, 238, 497 |
| GsuI | CTGGAG | 1 cut(s) | 163 |
| HaeIII | GGCC | 2 cut(s) | 447, 1411 |
| HapII | CCGG | 3 cut(s) | 53, 465, 803 |
| HindIII | AAGCTT | 2 cut(s) | 290, 1330 |
| HinfI | GANTC | 8 cut(s) | 529, 716, 875, 971, 1043, 1154, 1379, 1574 |
| HpaII | CCGG | 3 cut(s) | 53, 465, 803 |
| HphI | GGTGA | 1 cut(s) | 1508 |
| Hpy166II | GTNNAC | 3 cut(s) | 24, 281, 1547 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 180, 764, 1019, 1352 |
| Hpy8I | GTNNAC | 3 cut(s) | 24, 281, 1547 |
| HpyAV | CCTTC | 3 cut(s) | 604, 831, 1125 |
| HpyCH4IV | ACGT | 2 cut(s) | 860, 1432 |
| HpyCH4V | TGCA | 7 cut(s) | 157, 281, 338, 489, 749, 1004, 1184 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 174, 465, 1304, 1373 |
| HpyF3I | CTNAG | 7 cut(s) | 265, 360, 408, 507, 552, 605, 1333 |
| HpySE526I | ACGT | 2 cut(s) | 860, 1432 |
| Ksp22I | TGATCA | 3 cut(s) | 187, 1360, 1465 |
| LmnI | GCTCC | 3 cut(s) | 182, 403, 672 |
| LweI | GCATC | 5 cut(s) | 97, 736, 857, 1187, 1489 |
| MabI | ACCWGGT | 1 cut(s) | 211 |
| MaeI | CTAG | 4 cut(s) | 69, 630, 1160, 1230 |
| MaeII | ACGT | 2 cut(s) | 860, 1432 |
| MaeIII | GTNAC | 5 cut(s) | 81, 955, 1186, 1339, 1586 |
| MboII | GAAGA | 5 cut(s) | 252, 611, 1245, 1542, 1569 |
| MfeI | CAATTG | 1 cut(s) | 1535 |
| MflI | RGATCY | 4 cut(s) | 350, 814, 1093, 1489 |
| MhlI | GDGCHC | 6 cut(s) | 179, 283, 475, 570, 669, 699 |
| MlyI | GAGTC | 3 cut(s) | 884, 1163, 1568 |
| MmeI | TCCRAC | 1 cut(s) | 664 |
| MseI | TTAA | 6 cut(s) | 303, 345, 951, 1215, 1416, 1479 |
| MspCI | CTTAAG | 1 cut(s) | 950 |
| MspI | CCGG | 3 cut(s) | 53, 465, 803 |
| MspR9I | CCNGG | 3 cut(s) | 12, 213, 1542 |
| MunI | CAATTG | 1 cut(s) | 1535 |
| Mva1269I | GAATGC | 1 cut(s) | 1282 |
| MvaI | CCWGG | 3 cut(s) | 12, 213, 1542 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 174, 465, 1304, 1373 |
| NcoI | CCATGG | 1 cut(s) | 880 |
| NdeI | CATATG | 2 cut(s) | 121, 1369 |
| NlaIV | GGNNCC | 5 cut(s) | 51, 432, 446, 668, 1033 |
| NmuCI | GTSAC | 1 cut(s) | 955 |
| PaeR7I | CTCGAG | 1 cut(s) | 74 |
| PagI | TCATGA | 2 cut(s) | 763, 1018 |
| PasI | CCCWGGG | 1 cut(s) | 11 |
| PctI | GAATGC | 1 cut(s) | 1282 |
| PfeI | GAWTC | 5 cut(s) | 529, 716, 971, 1043, 1379 |
| PflFI | GACNNNGTC | 1 cut(s) | 19 |
| PkrI | GCNGC | 3 cut(s) | 7, 239, 498 |
| PleI | GAGTC | 3 cut(s) | 883, 1162, 1568 |
| PpsI | GAGTC | 3 cut(s) | 883, 1162, 1568 |
| PpuMI | RGGWCCY | 1 cut(s) | 430 |
| PshBI | ATTAAT | 1 cut(s) | 345 |
| PsiI | TTATAA | 1 cut(s) | 1506 |
| Psp124BI | GAGCTC | 1 cut(s) | 699 |
| Psp5II | RGGWCCY | 1 cut(s) | 430 |
| Psp6I | CCWGG | 3 cut(s) | 10, 211, 1540 |
| PspGI | CCWGG | 3 cut(s) | 10, 211, 1540 |
| PspN4I | GGNNCC | 5 cut(s) | 51, 432, 446, 668, 1033 |
| PspPI | GGNCC | 5 cut(s) | 50, 430, 445, 1031, 1409 |
| PspPPI | RGGWCCY | 1 cut(s) | 430 |
| PstI | CTGCAG | 1 cut(s) | 1186 |
| PstNI | CAGNNNCTG | 2 cut(s) | 968, 1382 |
| PsuI | RGATCY | 4 cut(s) | 350, 814, 1093, 1489 |
| PsyI | GACNNNGTC | 1 cut(s) | 19 |
| RsaI | GTAC | 5 cut(s) | 438, 1086, 1168, 1431, 1548 |
| RsaNI | GTAC | 5 cut(s) | 437, 1085, 1167, 1430, 1547 |
| SacI | GAGCTC | 1 cut(s) | 699 |
| SaqAI | TTAA | 6 cut(s) | 303, 345, 951, 1215, 1416, 1479 |
| SatI | GCNGC | 3 cut(s) | 6, 238, 497 |
| Sau96I | GGNCC | 5 cut(s) | 50, 430, 445, 1031, 1409 |
| ScaI | AGTACT | 2 cut(s) | 438, 1086 |
| SchI | GAGTC | 3 cut(s) | 884, 1163, 1568 |
| ScrFI | CCNGG | 3 cut(s) | 12, 213, 1542 |
| SduI | GDGCHC | 6 cut(s) | 179, 283, 475, 570, 669, 699 |
| SexAI | ACCWGGT | 1 cut(s) | 211 |
| SfaNI | GCATC | 5 cut(s) | 97, 736, 857, 1187, 1489 |
| SfcI | CTRYAG | 2 cut(s) | 1173, 1182 |
| Sfr274I | CTCGAG | 1 cut(s) | 74 |
| SinI | GGWCC | 3 cut(s) | 50, 430, 1031 |
| SlaI | CTCGAG | 1 cut(s) | 74 |
| SmlI | CTYRAG | 6 cut(s) | 74, 563, 950, 1053, 1080, 1271 |
| SmoI | CTYRAG | 6 cut(s) | 74, 563, 950, 1053, 1080, 1271 |
| SsiI | CCGC | 3 cut(s) | 237, 497, 1553 |
| SspMI | CTAG | 4 cut(s) | 69, 630, 1160, 1230 |
| SstI | GAGCTC | 1 cut(s) | 699 |
| StyD4I | CCNGG | 3 cut(s) | 10, 211, 1540 |
| StyI | CCWWGG | 4 cut(s) | 44, 880, 1035, 1159 |
| TaiI | ACGT | 2 cut(s) | 863, 1435 |
| TaqI | TCGA | 1 cut(s) | 75 |
| TatI | WGTACW | 4 cut(s) | 436, 1084, 1166, 1546 |
| TauI | GCSGC | 2 cut(s) | 240, 499 |
| TfiI | GAWTC | 5 cut(s) | 529, 716, 971, 1043, 1379 |
| Tru1I | TTAA | 6 cut(s) | 303, 345, 951, 1215, 1416, 1479 |
| Tru9I | TTAA | 6 cut(s) | 303, 345, 951, 1215, 1416, 1479 |
| TscAI | CASTG | 4 cut(s) | 642, 718, 831, 1468 |
| TseFI | GTSAC | 1 cut(s) | 955 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 1 cut(s) | 955 |
| TspDTI | ATGAA | 7 cut(s) | 219, 716, 752, 780, 908, 971, 1035 |
| TspRI | CASTG | 4 cut(s) | 642, 718, 831, 1468 |
| Tth111I | GACNNNGTC | 1 cut(s) | 19 |
| Vha464I | CTTAAG | 1 cut(s) | 950 |
| VneI | GTGCAC | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 3 cut(s) | 50, 430, 1031 |
| VspI | ATTAAT | 1 cut(s) | 345 |
| XapI | RAATTY | 3 cut(s) | 501, 514, 1388 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 219 |
| XhoI | CTCGAG | 1 cut(s) | 74 |
| XmaJI | CCTAGG | 1 cut(s) | 1159 |
| XmiI | GTMKAC | 1 cut(s) | 23 |
| XspI | CTAG | 4 cut(s) | 69, 630, 1160, 1230 |
| ZrmI | AGTACT | 2 cut(s) | 438, 1086 |