Rroxscaffold_6G00428100

Zein-binding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
48588569 .. 48593153
4585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428100.1

Sequence Viewer

Length: 1593 bp
ATGGCTGCCCCAGGGACTATGTCTACTAATCATCACAAAGTTCCTTGGGGTCCGGCATTGGTGTCAGCTAGTCTCGAGTGGTTACTGATTTTTATGCTGGTTGTGGATGCCATATTCTCATATGTAATTACGAAGTTTGCTCATTACTGGGGATTGCAAACACCATGCCTCCTGTGCTCCAGACTTGATCATGTCTTGGGCAATGAAAAACCAGGTTATTATTGGGACTTGATCTGCGGCAGTCATAAGTCAGAGATTTCTTCCTTAGTTCTCTGTCGTGCACACAACAAGCTTGTAGATGTTAATGGAATGTGTGAAAATTGCCTATTCTCTTTTGCAACCATTAATAGATCCAATGCTGAGACATTCAGGTTATTGGTGGGCAAGTTGGGGGAAGCTCCTAATTCTAAGGCTGACCATGAGATTGAGGACCCAGTACTCGGGGGCCAATATGTTTGCTTTTCCGGCAGAGCACATTGTTCTTGTTGCAATGAGCCGCAAATTTCTGAGGGGAATTCTCATAAGTTGATTCACTCTAAATTGTTTGGGTCTGAGGCTGAACTTGAGCCCCTATCTGGTGCTATTAGACAAAACCTTGAAGAACTGAGGAAGGCACAAGATAAACCATCTAGGTCAGTGAGAGCTTCTCATTTGAGAGATACTGGGCTCCCTTTATCTCATGTTGGATACACAGAGCTCAAAGGTTCTGACACTGAATCAGAAGTTCATTTTTCTGACGGGGAGGATGCAAGTGCTTCAATTCATGAAAAGGGAAAAGGTGTTGAACCTCATACTATTACTCCGGTTCTGATAGATCCACCTTCAGTGTCCAAGACTTTAGTTTCAGCATCAGAGATGACGTTAGATAATATGGAGTCCCATGGTAATACATCTGCTCGTGTGAGAGATATTAGGCTTCATGCTTTATCTCATGTAGGATACACAGAGCTTAAGGTCACTTCAGATACTGAATCGGAAGTTCATTTCTCTGATGATGATTATGCAGGTTCTCTAACTCATGAAATGGATGGTCCCAAGGTAGATTCCTCTGCTCAAGCTGTTGAGCCTCATGTTATTCCTCAAGTACTGACAGATCCACCATCTGTGTCCAAGCCTTCACTTTTGGTATCACAGGCACAAATAGATCGTATAGAGTCCCTAGGTAGTACATCTGTAGCATCTGCAGTTACTATTGGTCATGGATTGGAGGAACTTAACTTGAAAGAAGCTAGAAGAACACCTGATTATCATGCCTTATCTGAACCCCTACTTGAGAATGCCTCTCCATCATCAAAGGCAATGGAAGCCCCACTTGAAGTATCAAAGAGAAGCTTAGATGTTACAGGAACTCGTGAAATTGATCAAGCATATGTAGCAGAATCTGGGGAATTTCACAAGAGAGCTGTCGGGCCACTTAAAACCTCTGAAGTACGTTTAGAAACAAACCCAGTTTCAAGCAACACTGATCAGAAAGTGGTTAATGTTTTAGATCTCGGTGATGCTTATAAGATCGTTGTTGGTAGTCAAGGAAGACAATTGCCAGGTGTACTTGCGGAACAATGGATTGGAAAGGACTCTTCAAAGAGTTACTGA

Protein Analysis

530

Amino Acids

57.62

Weight (kDa)

5.47

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1506
Acc36I ACCTGC 1 cut(s) 995
AccI GTMKAC 1 cut(s) 23
AciI CCGC 3 cut(s) 237, 497, 1553
AclWI GGATC 3 cut(s) 345, 809, 1088
AcsI RAATTY 3 cut(s) 501, 514, 1388
AcuI CTGAAG 3 cut(s) 807, 945, 1446
AfaI GTAC 5 cut(s) 438, 1086, 1168, 1431, 1548
AfiI CCNNNNNNNGG 2 cut(s) 440, 575
AflII CTTAAG 1 cut(s) 950
AgsI TTSAA 7 cut(s) 599, 759, 785, 1222, 1316, 1455, 1581
AjnI CCWGG 3 cut(s) 10, 211, 1540
AjuI GAANNNNNNNTTGG 2 cut(s) 1548, 1580
Alw21I GWGCWC 4 cut(s) 179, 283, 475, 699
Alw26I GTCTC 2 cut(s) 77, 356
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 3 cut(s) 345, 809, 1088
AlwNI CAGNNNCTG 2 cut(s) 968, 1382
Ama87I CYCGRG 2 cut(s) 74, 440
AoxI GGCC 2 cut(s) 445, 1409
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 501, 514, 1388
AseI ATTAAT 1 cut(s) 345
AspA2I CCTAGG 1 cut(s) 1159
AspS9I GGNCC 5 cut(s) 50, 430, 445, 1031, 1409
AsuHPI GGTGA 1 cut(s) 1508
AvaI CYCGRG 2 cut(s) 74, 440
AvaII GGWCC 3 cut(s) 50, 430, 1031
AvrII CCTAGG 1 cut(s) 1159
BaeGI GKGCMC 1 cut(s) 283
BanII GRGCYC 3 cut(s) 570, 669, 699
BauI CACGAG 2 cut(s) 897, 1350
BbsI GAAGAC 1 cut(s) 1537
Bbv12I GWGCWC 4 cut(s) 179, 283, 475, 699
BccI CCATC 4 cut(s) 634, 1022, 1108, 1294
BciT130I CCWGG 3 cut(s) 12, 213, 1542
BciVI GTATCC 2 cut(s) 680, 932
BclI TGATCA 3 cut(s) 187, 1360, 1465
BcoDI GTCTC 2 cut(s) 77, 356
BfaI CTAG 4 cut(s) 69, 630, 1160, 1230
BfmI CTRYAG 2 cut(s) 1173, 1182
BfrI CTTAAG 1 cut(s) 950
BfuAI ACCTGC 1 cut(s) 995
BfuI GTATCC 2 cut(s) 680, 932
BglII AGATCT 1 cut(s) 1489
BisI GCNGC 3 cut(s) 6, 238, 497
BlnI CCTAGG 1 cut(s) 1159
BlsI GCNGC 3 cut(s) 7, 239, 498
BmcAI AGTACT 2 cut(s) 438, 1086
Bme1390I CCNGG 3 cut(s) 12, 213, 1542
Bme18I GGWCC 3 cut(s) 50, 430, 1031
BmeT110I CYCGRG 2 cut(s) 74, 440
BmgT120I GGNCC 5 cut(s) 50, 430, 445, 1031, 1409
BmiI GGNNCC 5 cut(s) 51, 432, 446, 668, 1033
BmrFI CCNGG 3 cut(s) 12, 213, 1542
BmrI ACTGGG 4 cut(s) 157, 428, 672, 1442
BmsI GCATC 5 cut(s) 97, 736, 857, 1187, 1489
BmuI ACTGGG 4 cut(s) 157, 428, 672, 1442
BpiI GAAGAC 1 cut(s) 1537
BplI GAGNNNNNCTC 4 cut(s) 631, 663, 1265, 1297
BpmI CTGGAG 1 cut(s) 163
BpuEI CTTGAG 4 cut(s) 584, 1038, 1065, 1292
BsaJI CCNNGG 6 cut(s) 10, 11, 44, 880, 1035, 1159
BsaWI WCCGGW 1 cut(s) 802
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 784, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 575
Bse1I ACTGG 4 cut(s) 152, 434, 667, 1448
Bse3DI GCAATG 3 cut(s) 208, 496, 1305
BseBI CCWGG 3 cut(s) 12, 213, 1542
BseDI CCNNGG 6 cut(s) 10, 11, 44, 880, 1035, 1159
BseGI GGATG 3 cut(s) 112, 751, 1033
BseLI CCNNNNNNNGG 2 cut(s) 440, 575
BseMI GCAATG 3 cut(s) 208, 496, 1305
BseMII CTCAG 4 cut(s) 351, 498, 543, 596
BseNI ACTGG 4 cut(s) 152, 434, 667, 1448
BseSI GKGCMC 1 cut(s) 283
BshFI GGCC 2 cut(s) 447, 1411
BsiHKAI GWGCWC 4 cut(s) 179, 283, 475, 699
BsiHKCI CYCGRG 2 cut(s) 74, 440
BsiSI CCGG 3 cut(s) 53, 465, 803
BslFI GGGAC 5 cut(s) 28, 239, 862, 1017, 1141
BslI CCNNNNNNNGG 2 cut(s) 440, 575
BsmAI GTCTC 2 cut(s) 77, 356
BsmFI GGGAC 5 cut(s) 28, 239, 862, 1017, 1141
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 2 cut(s) 447, 1411
BsoBI CYCGRG 2 cut(s) 74, 440
Bsp1286I GDGCHC 6 cut(s) 179, 283, 475, 570, 669, 699
Bsp19I CCATGG 1 cut(s) 880
BspACI CCGC 3 cut(s) 237, 497, 1553
BspANI GGCC 2 cut(s) 447, 1411
BspCNI CTCAG 4 cut(s) 352, 499, 544, 597
BspHI TCATGA 2 cut(s) 763, 1018
BspLI GGNNCC 5 cut(s) 51, 432, 446, 668, 1033
BspMAI CTGCAG 1 cut(s) 1186
BspMI ACCTGC 1 cut(s) 995
BspPI GGATC 3 cut(s) 345, 809, 1088
BspTI CTTAAG 1 cut(s) 950
BsrDI GCAATG 3 cut(s) 208, 496, 1305
BsrI ACTGG 4 cut(s) 152, 434, 667, 1448
BssECI CCNNGG 6 cut(s) 10, 11, 44, 880, 1035, 1159
BssSI CACGAG 2 cut(s) 897, 1350
BssT1I CCWWGG 4 cut(s) 44, 880, 1035, 1159
Bst2BI CACGAG 2 cut(s) 897, 1350
Bst2UI CCWGG 3 cut(s) 12, 213, 1542
Bst6I CTCTTC 1 cut(s) 1582
BstAFI CTTAAG 1 cut(s) 950
BstDEI CTNAG 7 cut(s) 265, 360, 408, 507, 552, 605, 1333
BstDSI CCRYGG 1 cut(s) 880
BstF5I GGATG 3 cut(s) 112, 751, 1033
BstMAI GTCTC 2 cut(s) 77, 356
BstMWI GCNNNNNNNGC 4 cut(s) 174, 465, 1304, 1373
BstNI CCWGG 3 cut(s) 12, 213, 1542
BstSCI CCNGG 3 cut(s) 10, 211, 1540
BstSFI CTRYAG 2 cut(s) 1173, 1182
BstSLI GKGCMC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 1537
BstX2I RGATCY 4 cut(s) 350, 814, 1093, 1489
BstYI RGATCY 4 cut(s) 350, 814, 1093, 1489
BsuI GTATCC 2 cut(s) 680, 932
BsuRI GGCC 2 cut(s) 447, 1411
BtgI CCRYGG 1 cut(s) 880
BtsCI GGATG 3 cut(s) 112, 751, 1033
BtsIMutI CAGTG 4 cut(s) 642, 711, 831, 1461
BveI ACCTGC 1 cut(s) 995
CaiI CAGNNNCTG 2 cut(s) 968, 1382
CciI TCATGA 2 cut(s) 763, 1018
Cfr13I GGNCC 5 cut(s) 50, 430, 445, 1031, 1409
CsiI ACCWGGT 1 cut(s) 211
Csp6I GTAC 5 cut(s) 437, 1085, 1167, 1430, 1547
CviQI GTAC 5 cut(s) 437, 1085, 1167, 1430, 1547
DdeI CTNAG 7 cut(s) 265, 360, 408, 507, 552, 605, 1333
Eam1104I CTCTTC 1 cut(s) 1582
EarI CTCTTC 1 cut(s) 1582
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 4 cut(s) 44, 880, 1035, 1159
Eco24I GRGCYC 3 cut(s) 570, 669, 699
Eco47I GGWCC 3 cut(s) 50, 430, 1031
Eco53kI GAGCTC 1 cut(s) 697
Eco57I CTGAAG 3 cut(s) 807, 945, 1446
Eco88I CYCGRG 2 cut(s) 74, 440
EcoICRI GAGCTC 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 3 cut(s) 10, 211, 1540
EcoT14I CCWWGG 4 cut(s) 44, 880, 1035, 1159
EcoT38I GRGCYC 3 cut(s) 570, 669, 699
ErhI CCWWGG 4 cut(s) 44, 880, 1035, 1159
FalI AAGNNNNNCTT 4 cut(s) 1296, 1328, 1316, 1348
FaqI GGGAC 5 cut(s) 28, 239, 862, 1017, 1141
FauNDI CATATG 2 cut(s) 121, 1369
FbaI TGATCA 3 cut(s) 187, 1360, 1465
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 6, 238, 497
FokI GGATG 3 cut(s) 119, 758, 1040
FriOI GRGCYC 3 cut(s) 570, 669, 699
Fsp4HI GCNGC 3 cut(s) 6, 238, 497
FspBI CTAG 4 cut(s) 69, 630, 1160, 1230
GluI GCNGC 3 cut(s) 6, 238, 497
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 2 cut(s) 447, 1411
HapII CCGG 3 cut(s) 53, 465, 803
HindIII AAGCTT 2 cut(s) 290, 1330
HinfI GANTC 8 cut(s) 529, 716, 875, 971, 1043, 1154, 1379, 1574
HpaII CCGG 3 cut(s) 53, 465, 803
HphI GGTGA 1 cut(s) 1508
Hpy166II GTNNAC 3 cut(s) 24, 281, 1547
Hpy188III TCNNGA 5 cut(s) 74, 180, 764, 1019, 1352
Hpy8I GTNNAC 3 cut(s) 24, 281, 1547
HpyAV CCTTC 3 cut(s) 604, 831, 1125
HpyCH4IV ACGT 2 cut(s) 860, 1432
HpyCH4V TGCA 7 cut(s) 157, 281, 338, 489, 749, 1004, 1184
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 465, 1304, 1373
HpyF3I CTNAG 7 cut(s) 265, 360, 408, 507, 552, 605, 1333
HpySE526I ACGT 2 cut(s) 860, 1432
Ksp22I TGATCA 3 cut(s) 187, 1360, 1465
LmnI GCTCC 3 cut(s) 182, 403, 672
LweI GCATC 5 cut(s) 97, 736, 857, 1187, 1489
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 4 cut(s) 69, 630, 1160, 1230
MaeII ACGT 2 cut(s) 860, 1432
MaeIII GTNAC 5 cut(s) 81, 955, 1186, 1339, 1586
MboII GAAGA 5 cut(s) 252, 611, 1245, 1542, 1569
MfeI CAATTG 1 cut(s) 1535
MflI RGATCY 4 cut(s) 350, 814, 1093, 1489
MhlI GDGCHC 6 cut(s) 179, 283, 475, 570, 669, 699
MlyI GAGTC 3 cut(s) 884, 1163, 1568
MmeI TCCRAC 1 cut(s) 664
MseI TTAA 6 cut(s) 303, 345, 951, 1215, 1416, 1479
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 3 cut(s) 53, 465, 803
MspR9I CCNGG 3 cut(s) 12, 213, 1542
MunI CAATTG 1 cut(s) 1535
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 3 cut(s) 12, 213, 1542
MwoI GCNNNNNNNGC 4 cut(s) 174, 465, 1304, 1373
NcoI CCATGG 1 cut(s) 880
NdeI CATATG 2 cut(s) 121, 1369
NlaIV GGNNCC 5 cut(s) 51, 432, 446, 668, 1033
NmuCI GTSAC 1 cut(s) 955
PaeR7I CTCGAG 1 cut(s) 74
PagI TCATGA 2 cut(s) 763, 1018
PasI CCCWGGG 1 cut(s) 11
PctI GAATGC 1 cut(s) 1282
PfeI GAWTC 5 cut(s) 529, 716, 971, 1043, 1379
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 7, 239, 498
PleI GAGTC 3 cut(s) 883, 1162, 1568
PpsI GAGTC 3 cut(s) 883, 1162, 1568
PpuMI RGGWCCY 1 cut(s) 430
PshBI ATTAAT 1 cut(s) 345
PsiI TTATAA 1 cut(s) 1506
Psp124BI GAGCTC 1 cut(s) 699
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 3 cut(s) 10, 211, 1540
PspGI CCWGG 3 cut(s) 10, 211, 1540
PspN4I GGNNCC 5 cut(s) 51, 432, 446, 668, 1033
PspPI GGNCC 5 cut(s) 50, 430, 445, 1031, 1409
PspPPI RGGWCCY 1 cut(s) 430
PstI CTGCAG 1 cut(s) 1186
PstNI CAGNNNCTG 2 cut(s) 968, 1382
PsuI RGATCY 4 cut(s) 350, 814, 1093, 1489
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 5 cut(s) 438, 1086, 1168, 1431, 1548
RsaNI GTAC 5 cut(s) 437, 1085, 1167, 1430, 1547
SacI GAGCTC 1 cut(s) 699
SaqAI TTAA 6 cut(s) 303, 345, 951, 1215, 1416, 1479
SatI GCNGC 3 cut(s) 6, 238, 497
Sau96I GGNCC 5 cut(s) 50, 430, 445, 1031, 1409
ScaI AGTACT 2 cut(s) 438, 1086
SchI GAGTC 3 cut(s) 884, 1163, 1568
ScrFI CCNGG 3 cut(s) 12, 213, 1542
SduI GDGCHC 6 cut(s) 179, 283, 475, 570, 669, 699
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 5 cut(s) 97, 736, 857, 1187, 1489
SfcI CTRYAG 2 cut(s) 1173, 1182
Sfr274I CTCGAG 1 cut(s) 74
SinI GGWCC 3 cut(s) 50, 430, 1031
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 6 cut(s) 74, 563, 950, 1053, 1080, 1271
SmoI CTYRAG 6 cut(s) 74, 563, 950, 1053, 1080, 1271
SsiI CCGC 3 cut(s) 237, 497, 1553
SspMI CTAG 4 cut(s) 69, 630, 1160, 1230
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 3 cut(s) 10, 211, 1540
StyI CCWWGG 4 cut(s) 44, 880, 1035, 1159
TaiI ACGT 2 cut(s) 863, 1435
TaqI TCGA 1 cut(s) 75
TatI WGTACW 4 cut(s) 436, 1084, 1166, 1546
TauI GCSGC 2 cut(s) 240, 499
TfiI GAWTC 5 cut(s) 529, 716, 971, 1043, 1379
Tru1I TTAA 6 cut(s) 303, 345, 951, 1215, 1416, 1479
Tru9I TTAA 6 cut(s) 303, 345, 951, 1215, 1416, 1479
TscAI CASTG 4 cut(s) 642, 718, 831, 1468
TseFI GTSAC 1 cut(s) 955
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 955
TspDTI ATGAA 7 cut(s) 219, 716, 752, 780, 908, 971, 1035
TspRI CASTG 4 cut(s) 642, 718, 831, 1468
Tth111I GACNNNGTC 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 950
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 50, 430, 1031
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 3 cut(s) 501, 514, 1388
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XhoI CTCGAG 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 1159
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 4 cut(s) 69, 630, 1160, 1230
ZrmI AGTACT 2 cut(s) 438, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.