Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011390

Physical Location & Seq

Genomic Coordinates Reverse (-)

4762791 .. 4768681

Gene Structure 5891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGGAATCGAGTCTGTCTTCACTGCACGAGCCTCACCATTTCTCTCATAACCTAACCTTTCGAACCCTAAACCCCATACTGAATCGCCGGAATCTCAACCTAGGGTTTCGAACCAATTCCACAGTCTCCGTCTCTGTCTCCCGCTCATTCTCCAAAACCGAACCGATCACCTCCTCCACACCCGAACCGGCCGCTAGCCCGGTCTACACTCCCACACCTCCGAACCGGGACCTCCGGACCCCTCACAGCGGGTATCATTTCGATGGAACTGCTCGGAAATTCTTTGAGGGATGGTACTTCAAGGTTTCGATTCCTGAGCGGAGGCAGAGCTTTTGCTTTATGTACTCCGTCGAGAATCCGGCGTTCCGTAAGAGACTGACGCCGTTAGAGTTGGCTCAGCACGGACCTAGAACCACCGGAGTCGGAGCTCAGATTCTCGGCGCGGATGACAAGTACATTTGCCAATACAGTGAAGAATCTAGTAACTTTTGGGGAAGTAGGCATGAGCTTATGTTGGGGAATACTTTTGTCGCAGAAAAACAATCGAAGCCTCCAAACAAGGAGGTTCCTCCTCAGGAATTCAATAAGAGAGTGATGGAAGGTTTTCAAGTAACTCCACTTTGGCACCAGGGTATTATTCGTGATGATGGCAGGACAAATTATGCGGAAACTGTGCCGACCGCACGTTGGGAATACAGTACCCGCCCAATTTTTGGGTGGGGTGATGTTGGCTCCAAGCAGAAGCCTACTGCTGGATGGCCAAGCATTTCAATTATTGTATATAATTATCTGGCTCTAGTTCAGCTCTATCCTTTCCATGTTAGCGGGGGTTGGATAGAGTGGGATGGTGAAAGATACGAGTTTCAAGATGCCCCTTCTTATTCTGAAAAGAACTGGGGTGGAGCATTCCCAAGAAAATGGTTCTGGGTCCAGTGTAATGTTTTTGAAGGGGCTAGTGGAGAAGTTGCTCTTACTGCAGGTGGTGGGTTGAGGCAAATACCTGGGTTATCAGAGACTTTTGAAAACGCTGCCCTGATTGGAGTTCACTGTGGTGGAAAGTTTTATGAATTTGTACCATGGAATGGTGTTGTTAGTTGGGAAATCGCTACTTGGGGTTATTGGTCCATGGCTGCAGAGAATGAGACGCATATGGTGTTCTCTAATTTTTTCGGAACTTGTGATGCTACTATTACTGTTGAATTAGAGGCAACAACAGAGGATCCTGGAACAACATTGCGTGCTCCAACATCAGAAGCTGGACTTGCCCCAGCTTGTAAAGATACTTGTTTTGGTGTGCTAAAATTACAGATATGGGAACGTAGATATGATGGCAGCAAGGGAAAGATGATATTAGATGTTAAAAGCAACATGGCCGCAGTAGAAGTTGGAGGGGGTCCATGGTTCAGTGCTTGGAAGGGAAGGACCTCTACTCCGGAGCTTCTTAAGCGGGCTATAGGAGCTCCGGTCGATGTAGAAGAGGCATATAATTTGGTTCCACTATTCAAACCCCCTGGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009706 GO:0009915 GO:0009941 GO:0009975 GO:0009976 GO:0009987 GO:0010189 GO:0010232 GO:0010233 GO:0010287 GO:0015766 GO:0015770 GO:0015772 GO:0015994 GO:0016020 GO:0016108 GO:0016116 GO:0016122 GO:0018130 GO:0019752 GO:0019866 GO:0031090 GO:0031347 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032787 GO:0033013 GO:0042170 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051186 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:0080134 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Tocopherol_cycl

Protein Analysis

506

Amino Acids

56.71

Weight (kDa)

6.34

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tocopherol_cycl	PF14249	92 - 464	8.5e-122	Tocopherol cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32770
fragaria_vesca	FvH4_2g35770 FvH4_2g35770 FvH4_2g35770 FvH4_2g35770
malus_domestica	MD08G1115600.v1.1 MD15G1095400.v1.1
prunus_persica	Prupe.1G450300_v2.0.a1
pyrus_communis	pycom15g08780
rosa_chinensis	RchiOBHm_Chr6g0306001
rosa_laevigata	RLG00000010833
rosa_multiflora	Rmu_sc0020534.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162140
rosa_rugosa	Rorug06G0346200 Rorug06G0346300
rosa_samantha	Rh6AG458000 Rh6BG442800 Rh6CG472500 Rh6DG458700
rosa_wichuraiana	Rw6G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	968
Acc36I	ACCTGC	1 cut(s)	968
AccB1I	GGYRCC	1 cut(s)	624
AccB7I	CCANNNNNTGG	2 cut(s)	713, 1082
AccBSI	CCGCTC	2 cut(s)	144, 319
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	443
AccIII	TCCGGA	2 cut(s)	234, 1432
AclWI	GGATC	2 cut(s)	1214, 1227
AcoI	YGGCCR	3 cut(s)	189, 758, 1371
AcsI	RAATTY	3 cut(s)	278, 578, 1067
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	5 cut(s)	296, 344, 455, 700, 1074
AfiI	CCNNNNNNNGG	5 cut(s)	248, 687, 713, 752, 1082
AflII	CTTAAG	1 cut(s)	1442
AgsI	TTSAA	9 cut(s)	301, 583, 608, 771, 866, 947, 1022, 1199, 1504
AjnI	CCWGG	4 cut(s)	627, 1000, 1222, 1510
AleI	CACNNNNGTG	1 cut(s)	1050
AluBI	AGCT	8 cut(s)	330, 428, 508, 805, 1256, 1271, 1438, 1460
AluI	AGCT	8 cut(s)	330, 428, 508, 805, 1256, 1271, 1438, 1460
Alw21I	GWGCWC	3 cut(s)	430, 1243, 1462
Alw26I	GTCTC	6 cut(s)	130, 136, 142, 367, 1007, 1136
AlwI	GGATC	2 cut(s)	1214, 1227
AlwNI	CAGNNNCTG	1 cut(s)	1256
Aor13HI	TCCGGA	2 cut(s)	234, 1432
AoxI	GGCC	3 cut(s)	189, 758, 1371
ApeKI	GCWGC	3 cut(s)	1028, 1130, 1332
ApoI	RAATTY	3 cut(s)	278, 578, 1067
Asp700I	GAANNNNTTC	2 cut(s)	115, 603
AspA2I	CCTAGG	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
AsuC2I	CCSGG	2 cut(s)	200, 227
AsuHPI	GGTGA	4 cut(s)	26, 160, 734, 860
AsuII	TTCGAA	2 cut(s)	61, 109
AsuNHI	GCTAGC	1 cut(s)	194
AvaII	GGWCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
AvrII	CCTAGG	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	573
BalI	TGGCCA	1 cut(s)	760
BamHI	GGATCC	1 cut(s)	1219
BanI	GGYRCC	1 cut(s)	624
BanII	GRGCYC	2 cut(s)	430, 1462
BarI	GAAGNNNNNNTAC	2 cut(s)	1411, 1443
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	3 cut(s)	430, 1243, 1462
BbvI	GCAGC	3 cut(s)	1015, 1117, 1344
BccI	CCATC	7 cut(s)	257, 285, 589, 641, 750, 839, 1322
BceAI	ACGGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	4 cut(s)	629, 1002, 1224, 1512
BcnI	CCSGG	2 cut(s)	200, 227
BcoDI	GTCTC	6 cut(s)	130, 136, 142, 367, 1007, 1136
BfaI	CTAG	6 cut(s)	101, 195, 408, 480, 797, 954
BfmI	CTRYAG	3 cut(s)	975, 1131, 1452
BfrI	CTTAAG	1 cut(s)	1442
BfuAI	ACCTGC	1 cut(s)	968
BisI	GCNGC	5 cut(s)	192, 1029, 1131, 1333, 1374
BlnI	CCTAGG	1 cut(s)	100
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	5 cut(s)	193, 1030, 1132, 1334, 1375
Bme1390I	CCNGG	6 cut(s)	200, 227, 629, 1002, 1224, 1512
Bme18I	GGWCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
BmgT120I	GGNCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
BmiI	GGNNCC	9 cut(s)	230, 239, 567, 626, 733, 929, 1221, 1395, 1494
BmrFI	CCNGG	6 cut(s)	200, 227, 629, 1002, 1224, 1512
BmrI	ACTGGG	1 cut(s)	904
BmsI	GCATC	2 cut(s)	859, 1171
BmtI	GCTAGC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	904
BpiI	GAAGAC	1 cut(s)	9
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	2 cut(s)	61, 109
BpuMI	CCSGG	2 cut(s)	200, 227
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	7 cut(s)	100, 628, 1001, 1076, 1125, 1397, 1510
BsaWI	WCCGGW	4 cut(s)	234, 416, 1432, 1462
BsaXI	ACNNNNNCTCC	4 cut(s)	1414, 1444, 1449, 1479
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 687, 713, 752, 1082
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	899, 931
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	1232
BseAI	TCCGGA	2 cut(s)	234, 1432
BseBI	CCWGG	4 cut(s)	629, 1002, 1224, 1512
BseDI	CCNNGG	7 cut(s)	100, 628, 1001, 1076, 1125, 1397, 1510
BseGI	GGATG	4 cut(s)	296, 451, 761, 850
BseLI	CCNNNNNNNGG	5 cut(s)	248, 687, 713, 752, 1082
BseMI	GCAATG	1 cut(s)	1232
BseMII	CTCAG	4 cut(s)	306, 410, 443, 587
BseNI	ACTGG	2 cut(s)	899, 931
BseRI	GAGGAG	2 cut(s)	163, 561
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	1015, 1117, 1344
BseYI	CCCAGC	1 cut(s)	1267
BsgI	GTGCAG	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	3 cut(s)	192, 681, 1467
BshFI	GGCC	3 cut(s)	191, 760, 1373
BshNI	GGYRCC	1 cut(s)	624
BsiEI	CGRYCG	3 cut(s)	192, 681, 1467
BsiHKAI	GWGCWC	3 cut(s)	430, 1243, 1462
BsiSI	CCGG	9 cut(s)	88, 188, 200, 226, 235, 359, 417, 1433, 1463
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	5 cut(s)	248, 687, 713, 752, 1082
BsmAI	GTCTC	6 cut(s)	130, 136, 142, 367, 1007, 1136
BsmBI	CGTCTC	2 cut(s)	136, 1136
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	3 cut(s)	191, 760, 1373
Bsp119I	TTCGAA	2 cut(s)	61, 109
Bsp1286I	GDGCHC	3 cut(s)	430, 1243, 1462
Bsp13I	TCCGGA	2 cut(s)	234, 1432
Bsp143I	GATC	2 cut(s)	165, 1219
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	3 cut(s)	1076, 1125, 1397
BspANI	GGCC	3 cut(s)	191, 760, 1373
BspCNI	CTCAG	4 cut(s)	307, 409, 442, 586
BspEI	TCCGGA	2 cut(s)	234, 1432
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	9 cut(s)	230, 239, 567, 626, 733, 929, 1221, 1395, 1494
BspMAI	CTGCAG	2 cut(s)	979, 1135
BspMI	ACCTGC	1 cut(s)	968
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	2 cut(s)	1214, 1227
BspT104I	TTCGAA	2 cut(s)	61, 109
BspT107I	GGYRCC	1 cut(s)	624
BspTI	CTTAAG	1 cut(s)	1442
BsrBI	CCGCTC	2 cut(s)	144, 319
BsrDI	GCAATG	1 cut(s)	1232
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	899, 931
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	7 cut(s)	100, 628, 1001, 1076, 1125, 1397, 1510
BssMI	GATC	2 cut(s)	165, 1219
BssNI	GRCGYC	1 cut(s)	380
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	4 cut(s)	100, 1076, 1125, 1397
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	4 cut(s)	629, 1002, 1224, 1512
Bst4CI	ACNGT	6 cut(s)	124, 470, 673, 698, 1049, 1195
Bst6I	CTCTTC	1 cut(s)	1470
BstACI	GRCGYC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	1442
BstBI	TTCGAA	2 cut(s)	61, 109
BstC8I	GCNNGC	3 cut(s)	196, 1239, 1449
BstDEI	CTNAG	4 cut(s)	315, 396, 429, 573
BstDSI	CCRYGG	3 cut(s)	1076, 1125, 1397
BstF5I	GGATG	4 cut(s)	296, 451, 761, 850
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	2 cut(s)	168, 1222
BstMAI	GTCTC	6 cut(s)	130, 136, 142, 367, 1007, 1136
BstMBI	GATC	2 cut(s)	165, 1219
BstMCI	CGRYCG	3 cut(s)	192, 681, 1467
BstMWI	GCNNNNNNNGC	4 cut(s)	974, 1262, 1444, 1457
BstNI	CCWGG	4 cut(s)	629, 1002, 1224, 1512
BstSCI	CCNGG	6 cut(s)	198, 225, 627, 1000, 1222, 1510
BstSFI	CTRYAG	3 cut(s)	975, 1131, 1452
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	3 cut(s)	1015, 1117, 1344
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	1219
BstXI	CCANNNNNNTGG	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	1219
BstZI	CGGCCG	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	191, 760, 1373
BtgI	CCRYGG	3 cut(s)	1076, 1125, 1397
BtsCI	GGATG	4 cut(s)	296, 451, 761, 850
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	5 cut(s)	20, 475, 938, 1045, 1411
BveI	ACCTGC	1 cut(s)	968
Cac8I	GCNNGC	3 cut(s)	196, 1239, 1449
CaiI	CAGNNNCTG	1 cut(s)	1256
CfoI	GCGC	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
CseI	GACGC	2 cut(s)	388, 1153
Csp6I	GTAC	5 cut(s)	295, 343, 454, 699, 1073
CviAII	CATG	6 cut(s)	503, 818, 1077, 1126, 1369, 1398
CviQI	GTAC	5 cut(s)	295, 343, 454, 699, 1073
DdeI	CTNAG	4 cut(s)	315, 396, 429, 573
DpnI	GATC	2 cut(s)	167, 1221
DpnII	GATC	2 cut(s)	165, 1219
EaeI	YGGCCR	3 cut(s)	189, 758, 1371
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	1470
EarI	CTCTTC	1 cut(s)	1470
Ecl136II	GAGCTC	2 cut(s)	428, 1460
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	4 cut(s)	100, 1076, 1125, 1397
Eco24I	GRGCYC	2 cut(s)	430, 1462
Eco47I	GGWCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
Eco52I	CGGCCG	1 cut(s)	189
Eco53kI	GAGCTC	2 cut(s)	428, 1460
Eco81I	CCTNAGG	1 cut(s)	573
EcoICRI	GAGCTC	2 cut(s)	428, 1460
EcoO109I	RGGNCCY	2 cut(s)	229, 1422
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	4 cut(s)	627, 1000, 1222, 1510
EcoT14I	CCWWGG	4 cut(s)	100, 1076, 1125, 1397
EcoT38I	GRGCYC	2 cut(s)	430, 1462
ErhI	CCWWGG	4 cut(s)	100, 1076, 1125, 1397
Esp3I	CGTCTC	2 cut(s)	136, 1136
FaeI	CATG	6 cut(s)	506, 821, 1080, 1129, 1372, 1401
FalI	AAGNNNNNCTT	4 cut(s)	954, 986, 1245, 1277
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	502, 817, 1076, 1125, 1368, 1397
FauI	CCCGC	5 cut(s)	149, 242, 710, 818, 1440
FauNDI	CATATG	1 cut(s)	1149
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	5 cut(s)	192, 1029, 1131, 1333, 1374
FokI	GGATG	4 cut(s)	303, 458, 768, 857
FriOI	GRGCYC	2 cut(s)	430, 1462
Fsp4HI	GCNGC	5 cut(s)	192, 1029, 1131, 1333, 1374
FspBI	CTAG	6 cut(s)	101, 195, 408, 480, 797, 954
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	5 cut(s)	192, 1029, 1131, 1333, 1374
GsaI	CCCAGC	1 cut(s)	1271
HaeIII	GGCC	3 cut(s)	191, 760, 1373
HapII	CCGG	9 cut(s)	88, 188, 200, 226, 235, 359, 417, 1433, 1463
HgaI	GACGC	2 cut(s)	388, 1153
HhaI	GCGC	1 cut(s)	443
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	6 cut(s)	506, 821, 1080, 1129, 1372, 1401
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HinfI	GANTC	9 cut(s)	5, 10, 82, 91, 310, 355, 420, 433, 476
HpaII	CCGG	9 cut(s)	88, 188, 200, 226, 235, 359, 417, 1433, 1463
HphI	GGTGA	4 cut(s)	26, 160, 734, 860
Hpy166II	GTNNAC	2 cut(s)	205, 1045
Hpy188I	TCNGA	8 cut(s)	222, 276, 425, 432, 886, 1012, 1172, 1252
Hpy188III	TCNNGA	7 cut(s)	235, 314, 352, 575, 641, 866, 1433
Hpy8I	GTNNAC	2 cut(s)	205, 1045
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	5 cut(s)	593, 885, 941, 1408, 1413
HpyCH4III	ACNGT	6 cut(s)	124, 470, 673, 698, 1049, 1195
HpyCH4IV	ACGT	2 cut(s)	685, 1318
HpyCH4V	TGCA	3 cut(s)	25, 977, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	974, 1262, 1444, 1457
HpyF3I	CTNAG	4 cut(s)	315, 396, 429, 573
HpySE526I	ACGT	2 cut(s)	685, 1318
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	6 cut(s)	506, 821, 1080, 1129, 1372, 1401
HspAI	GCGC	1 cut(s)	441
Kpn2I	TCCGGA	2 cut(s)	234, 1432
Kzo9I	GATC	2 cut(s)	165, 1219
LmnI	GCTCC	7 cut(s)	425, 737, 902, 1246, 1435, 1457, 1465
Lsp1109I	GCAGC	3 cut(s)	1015, 1117, 1344
LweI	GCATC	2 cut(s)	859, 1171
MaeI	CTAG	6 cut(s)	101, 195, 408, 480, 797, 954
MaeII	ACGT	2 cut(s)	685, 1318
MaeIII	GTNAC	2 cut(s)	482, 610
MalI	GATC	2 cut(s)	167, 1221
MbiI	CCGCTC	2 cut(s)	144, 319
MboI	GATC	2 cut(s)	165, 1219
MboII	GAAGA	3 cut(s)	9, 485, 1487
MflI	RGATCY	1 cut(s)	1219
MhlI	GDGCHC	3 cut(s)	430, 1243, 1462
MlsI	TGGCCA	1 cut(s)	760
MluNI	TGGCCA	1 cut(s)	760
MlyI	GAGTC	2 cut(s)	19, 429
MmeI	TCCRAC	4 cut(s)	403, 812, 1268, 1366
Mox20I	TGGCCA	1 cut(s)	760
MroI	TCCGGA	2 cut(s)	234, 1432
MroXI	GAANNNNTTC	2 cut(s)	115, 603
MscI	TGGCCA	1 cut(s)	760
MseI	TTAA	2 cut(s)	1359, 1443
MslI	CAYNNNNRTG	2 cut(s)	261, 1050
Msp20I	TGGCCA	1 cut(s)	760
MspA1I	CMGCKG	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	1442
MspI	CCGG	9 cut(s)	88, 188, 200, 226, 235, 359, 417, 1433, 1463
MspR9I	CCNGG	6 cut(s)	200, 227, 629, 1002, 1224, 1512
Mva1269I	GAATGC	1 cut(s)	905
MvaI	CCWGG	4 cut(s)	629, 1002, 1224, 1512
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	4 cut(s)	974, 1262, 1444, 1457
NciI	CCSGG	2 cut(s)	200, 227
NcoI	CCATGG	3 cut(s)	1076, 1125, 1397
NdeI	CATATG	1 cut(s)	1149
NdeII	GATC	2 cut(s)	165, 1219
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	6 cut(s)	506, 821, 1080, 1129, 1372, 1401
NlaIV	GGNNCC	9 cut(s)	230, 239, 567, 626, 733, 929, 1221, 1395, 1494
NmeAIII	GCCGAG	1 cut(s)	417
NspV	TTCGAA	2 cut(s)	61, 109
OliI	CACNNNNGTG	1 cut(s)	1050
PaqCI	CACCTGC	1 cut(s)	968
PctI	GAATGC	1 cut(s)	905
PdmI	GAANNNNTTC	2 cut(s)	115, 603
PfeI	GAWTC	7 cut(s)	5, 82, 91, 310, 355, 433, 476
PflMI	CCANNNNNTGG	2 cut(s)	713, 1082
PfoI	TCCNGGA	1 cut(s)	1222
PkrI	GCNGC	5 cut(s)	193, 1030, 1132, 1334, 1375
PleI	GAGTC	2 cut(s)	18, 428
PpsI	GAGTC	2 cut(s)	18, 428
PpuMI	RGGWCCY	2 cut(s)	229, 1422
Psp124BI	GAGCTC	2 cut(s)	430, 1462
Psp5II	RGGWCCY	2 cut(s)	229, 1422
Psp6I	CCWGG	4 cut(s)	627, 1000, 1222, 1510
PspFI	CCCAGC	1 cut(s)	1267
PspGI	CCWGG	4 cut(s)	627, 1000, 1222, 1510
PspN4I	GGNNCC	9 cut(s)	230, 239, 567, 626, 733, 929, 1221, 1395, 1494
PspPI	GGNCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
PspPPI	RGGWCCY	2 cut(s)	229, 1422
PstI	CTGCAG	2 cut(s)	979, 1135
PstNI	CAGNNNCTG	1 cut(s)	1256
PsuI	RGATCY	1 cut(s)	1219
RsaI	GTAC	5 cut(s)	296, 344, 455, 700, 1074
RsaNI	GTAC	5 cut(s)	295, 343, 454, 699, 1073
RseI	CAYNNNNRTG	2 cut(s)	261, 1050
SacI	GAGCTC	2 cut(s)	430, 1462
SaqAI	TTAA	2 cut(s)	1359, 1443
SatI	GCNGC	5 cut(s)	192, 1029, 1131, 1333, 1374
Sau3AI	GATC	2 cut(s)	165, 1219
Sau96I	GGNCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
SchI	GAGTC	2 cut(s)	19, 429
ScrFI	CCNGG	6 cut(s)	200, 227, 629, 1002, 1224, 1512
SduI	GDGCHC	3 cut(s)	430, 1243, 1462
SfaNI	GCATC	2 cut(s)	859, 1171
SfcI	CTRYAG	3 cut(s)	975, 1131, 1452
SfuI	TTCGAA	2 cut(s)	61, 109
SinI	GGWCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
SmiMI	CAYNNNNRTG	2 cut(s)	261, 1050
SmlI	CTYRAG	1 cut(s)	1442
SmoI	CTYRAG	1 cut(s)	1442
SspMI	CTAG	6 cut(s)	101, 195, 408, 480, 797, 954
SstI	GAGCTC	2 cut(s)	430, 1462
StyD4I	CCNGG	6 cut(s)	198, 225, 627, 1000, 1222, 1510
StyI	CCWWGG	4 cut(s)	100, 1076, 1125, 1397
TaaI	ACNGT	6 cut(s)	124, 470, 673, 698, 1049, 1195
TaiI	ACGT	2 cut(s)	688, 1321
TaqI	TCGA	8 cut(s)	8, 61, 109, 261, 308, 351, 545, 1467
TatI	WGTACW	2 cut(s)	342, 453
TauI	GCSGC	2 cut(s)	194, 1376
TfiI	GAWTC	7 cut(s)	5, 82, 91, 310, 355, 433, 476
Tru1I	TTAA	2 cut(s)	1359, 1443
Tru9I	TTAA	2 cut(s)	1359, 1443
TscAI	CASTG	5 cut(s)	27, 475, 938, 1052, 1411
TseI	GCWGC	3 cut(s)	1028, 1130, 1332
TspDTI	ATGAA	1 cut(s)	1080
TspGWI	ACGGA	4 cut(s)	118, 337, 356, 417
TspRI	CASTG	5 cut(s)	27, 475, 938, 1052, 1411
Van91I	CCANNNNNTGG	2 cut(s)	713, 1082
Vha464I	CTTAAG	1 cut(s)	1442
VpaK11BI	GGWCC	7 cut(s)	229, 237, 404, 928, 1122, 1394, 1422
XapI	RAATTY	3 cut(s)	278, 578, 1067
XcmI	CCANNNNNNNNNTGG	1 cut(s)	714
XmaJI	CCTAGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	2 cut(s)	115, 603
XspI	CTAG	6 cut(s)	101, 195, 408, 480, 797, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.