Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011390

Physical Location & Seq

Genomic Coordinates Reverse (-)

49709476 .. 49710259

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0346300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTGAAGACTATTGCATCGGACCCAAGTGTCCTTGCGCTCGGTAATGAAGAAGCTGCTGATCCTAACTTGCCAAAGAAGGAAGTACGCCGGTTCCTCGATCCAAGCAGAGAAAGTAGCAGTAGAAATGGAATTACGTTTACGACAGTGGATACTAGTACTCTTCATGGAACAGAACAAAACAAGGTGACAGAACTGAAGAGTTTACCTGTTCAACCTGCCAGTTTAACTCCTCCCTCTAATCTTCTTAGTGCCACCGAAGAAGATGGCAGTGTTTCTGTGGATACTGGAATGAACCATAACATTACCGATCCTGCTCGCAGTCATGAAGAGTCAAGATGCAGAACTGAAAATATCTCTGATGTGGCCCTAGGAACTGCTCAAGCTCGAATATTCATCGACTTGAATATTCCCCCACATGTGGGAAGAGAAGAACCCTTCACCGCGGACACAATGAATAGTATGGATGATTCATATGCAAACAAGTCATCAATTGTGCCTGAAACAGGACAGCAGAAGGTGGAGGAGGTGGAGGTTTATGAAGTTGGGGCTAGTGTAGAAGAGCAGCAGCCTGTTGCTAACAGCCAGAGGAAAAGCACAAGGAGCCGTCCGCTGACGAAAAAAGCCTGGGAAGCTCTGGAAAATGAATTCAGCAGTACAAAGAGGAAGAGAAGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009706 GO:0009915 GO:0009941 GO:0009975 GO:0009976 GO:0009987 GO:0010189 GO:0010232 GO:0010233 GO:0010287 GO:0015766 GO:0015770 GO:0015772 GO:0015994 GO:0016020 GO:0016108 GO:0016116 GO:0016122 GO:0018130 GO:0019752 GO:0019866 GO:0031090 GO:0031347 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032787 GO:0033013 GO:0042170 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051186 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:0080134 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Tocopherol_cycl

Protein Analysis

226

Amino Acids

24.82

Weight (kDa)

5.17

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32770
fragaria_vesca	FvH4_2g35770 FvH4_2g35770 FvH4_2g35770 FvH4_2g35770
malus_domestica	MD08G1115600.v1.1 MD15G1095400.v1.1
prunus_persica	Prupe.1G450300_v2.0.a1
pyrus_communis	pycom15g08780
rosa_chinensis	RchiOBHm_Chr6g0306001
rosa_laevigata	RLG00000010833
rosa_multiflora	Rmu_sc0020534.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162140
rosa_rugosa	Rorug06G0346200 Rorug06G0346300
rosa_samantha	Rh6AG458000 Rh6BG442800 Rh6CG472500 Rh6DG458700
rosa_wichuraiana	Rw6G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	226
AccII	CGCG	1 cut(s)	446
AciI	CCGC	3 cut(s)	444, 446, 611
AclWI	GGATC	3 cut(s)	56, 95, 305
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	3 cut(s)	87, 160, 658
AfiI	CCNNNNNNNGG	3 cut(s)	421, 422, 506
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	7, 215, 406
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	626
AluBI	AGCT	3 cut(s)	56, 386, 635
AluI	AGCT	3 cut(s)	56, 386, 635
AlwI	GGATC	3 cut(s)	56, 95, 305
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	56, 565, 568
ApoI	RAATTY	1 cut(s)	647
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	22, 367
AsuHPI	GGTGA	2 cut(s)	199, 433
AvaII	GGWCC	1 cut(s)	22
AvrII	CCTAGG	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	43, 577, 580
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	591
BciT130I	CCWGG	1 cut(s)	628
BciVI	GTATCC	2 cut(s)	145, 277
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	3 cut(s)	156, 371, 552
BfuAI	ACCTGC	1 cut(s)	226
BfuI	GTATCC	2 cut(s)	145, 277
BisI	GCNGC	3 cut(s)	57, 566, 569
BlnI	CCTAGG	1 cut(s)	370
BlsI	GCNGC	3 cut(s)	58, 567, 570
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 367
BmiI	GGNNCC	3 cut(s)	24, 95, 605
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	26, 329
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	370, 444, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 422, 506
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	222, 292
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	3 cut(s)	370, 444, 627
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	3 cut(s)	421, 422, 506
BseNI	ACTGG	2 cut(s)	222, 292
BseRI	GAGGAG	2 cut(s)	222, 539
BseXI	GCAGC	3 cut(s)	43, 577, 580
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	3 cut(s)	421, 422, 506
BsnI	GGCC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	61, 100, 310
BspACI	CCGC	3 cut(s)	444, 446, 611
BspANI	GGCC	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	24, 95, 605
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	56, 95, 305
BspQI	GCTCTTC	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	222, 292
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	3 cut(s)	370, 444, 627
BssMI	GATC	3 cut(s)	61, 100, 310
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	7 cut(s)	168, 194, 324, 421, 555, 662, 667
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	3 cut(s)	64, 103, 313
BstMBI	GATC	3 cut(s)	61, 100, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	603, 632
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	626
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	43, 577, 580
BstV2I	GAAGAC	1 cut(s)	14
BsuI	GTATCC	2 cut(s)	145, 277
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	153, 277
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	319
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	22, 367
Cfr42I	CCGCGG	1 cut(s)	447
Csp6I	GTAC	3 cut(s)	86, 159, 657
CviAII	CATG	3 cut(s)	167, 326, 419
CviJI	RGCY	9 cut(s)	56, 368, 386, 551, 571, 585, 606, 626, 635
CviKI_1	RGCY	9 cut(s)	56, 368, 386, 551, 571, 585, 606, 626, 635
CviQI	GTAC	3 cut(s)	86, 159, 657
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	3 cut(s)	63, 102, 312
DpnII	GATC	3 cut(s)	61, 100, 310
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	7 cut(s)	168, 194, 324, 421, 555, 662, 667
EarI	CTCTTC	7 cut(s)	168, 194, 324, 421, 555, 662, 667
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	3 cut(s)	170, 329, 422
FaiI	YATR	8 cut(s)	168, 300, 327, 420, 464, 475, 477, 540
FatI	CATG	3 cut(s)	166, 325, 418
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	57, 566, 569
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	3 cut(s)	57, 566, 569
FspBI	CTAG	3 cut(s)	156, 371, 552
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	57, 566, 569
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	91
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	170, 329, 422
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	332, 470
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	2 cut(s)	199, 433
Hpy166II	GTNNAC	2 cut(s)	141, 206
Hpy188I	TCNGA	2 cut(s)	22, 361
Hpy188III	TCNNGA	3 cut(s)	326, 336, 638
Hpy8I	GTNNAC	2 cut(s)	141, 206
HpyAV	CCTTC	3 cut(s)	73, 448, 511
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	17, 342, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	603, 632
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	170, 329, 422
HspAI	GCGC	1 cut(s)	38
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	61, 100, 310
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	1 cut(s)	603
Lsp1109I	GCAGC	3 cut(s)	43, 577, 580
LweI	GCATC	2 cut(s)	26, 329
MaeI	CTAG	3 cut(s)	156, 371, 552
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	3 cut(s)	63, 102, 312
MboI	GATC	3 cut(s)	61, 100, 310
MfeI	CAATTG	1 cut(s)	492
MluCI	AATT	3 cut(s)	132, 492, 647
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	9 cut(s)	107, 243, 247, 517, 520, 526, 582, 657, 668
MseI	TTAA	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	446, 613
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	628
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	603, 632
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	3 cut(s)	61, 100, 310
NlaIII	CATG	3 cut(s)	170, 329, 422
NlaIV	GGNNCC	3 cut(s)	24, 95, 605
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	1 cut(s)	325
PciI	ACATGT	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	58, 567, 570
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	3 cut(s)	24, 95, 605
PspPI	GGNCC	2 cut(s)	22, 367
RsaI	GTAC	3 cut(s)	87, 160, 658
RsaNI	GTAC	3 cut(s)	86, 159, 657
SacII	CCGCGG	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	57, 566, 569
Sau3AI	GATC	3 cut(s)	61, 100, 310
Sau96I	GGNCC	2 cut(s)	22, 367
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	26, 329
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	3 cut(s)	132, 492, 647
SsiI	CCGC	3 cut(s)	444, 446, 611
SspI	AATATT	2 cut(s)	393, 409
SspMI	CTAG	3 cut(s)	156, 371, 552
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	99, 388, 399
TasI	AATT	3 cut(s)	132, 492, 647
TatI	WGTACW	2 cut(s)	158, 656
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	153, 277
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	3 cut(s)	56, 565, 568
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	9 cut(s)	63, 155, 308, 342, 385, 462, 470, 555, 660
TspRI	CASTG	2 cut(s)	153, 277
VpaK11BI	GGWCC	1 cut(s)	22
XagI	CCTNNNNNAGG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	422
XmaJI	CCTAGG	1 cut(s)	370
XspI	CTAG	3 cut(s)	156, 371, 552
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.