Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011390

Physical Location & Seq

Genomic Coordinates Forward (+)

63783269 .. 63788441

Gene Structure 5173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGAATTGAGTCTGTCTTCACTGCACGAGCCTCACCATTTCTCTCATAACCTAACCTTTCGAACCCTAAACCCCATACTGAATCGCCGGAATCTCAACCTAGGGTTTCGAACCAATTCCACCGTCTCCAGCTCAATCTCCAAAACCGAGCCGATCACCTCCTCCTCACCGGAACCGGCCGAGAGCCCGGTCTACACTCCCACACCTCCGAACCGGGACCTCCGGACCCCTCACAGCGGGTACCATTTCGATGGAACTGCTCGGAAATTCTTTGAGGGATGGTACTTCAAGGTTTCGATTCCTGAGCGGAGGCAGAGCTTTTGCTTTATGTACTCCGTCGAGAATCCGGCGTTCCGTAAGAGACTGACGCCGTTAGAGTTGGCTCAGCACGGACCTAGAACCACCGGAGTCGGAGCTCAGATTCTCGGCGCGGATGACAAGTACATTTGCCAATACAGTGAAGAATCTAGTAACTTTTGGGGAAGTAGGCATGAGCTTATGTTGGGGAATACTTTTGTCGCAGAAAAACAATCGAAGCCTCCAAACAAGGAGGTTCCTCCTCAGGAATTCAATAAGAGAGTGATGGAAGGTTTTCAGGTAACTCCACTTTGGCACCAGGGTAATATTCGTGATGATGGCAGGACAAATTATGCGGAAACTGTGCCGACTGCACGTTGGGAATACAGTACCCGCCCAATTTTTGGGTGGGGTGATGTTGGCTCCAAGCAGAAGCCTACTGCTGGATGGTTAGCAGCTTTTCCCGTATTTGAACCCCATTGGCAAATATGCATGGCTGGTGGATTGTCAACAGGTTGGATAGAGTGGGATGGTGAAAGATACGAGTTTCAAGATGCCCCTTCTTATTCTGAAAAGAACTGGGGTGGAGCATTCCCAAGAAAATGGTTCTGGGTCCAGTGTAATGTTTTTGAAGGGGCTAGTGGAGAAGTTGCTCTTACTGCAGGTGGTGGGTTGAGGCAAATACCTGGGGTATCAGAGACTTTTGAAAACGCTGCCCTGATTGGAGTTCACTGTGGTGGAAAGTTTTATGAATTTGTACCATGGAATGGTGTTGTTAGTTGGGAAATCGCTACTTGGGGTCATTGGTCCATGGCTGCAGAGAATGAGACGCATATGGTTGAATTAGAGGCAACAACAGAGGATCCTGGTACAACATTGCGTGCTCCAACATCAGAAGCTGGACTTGCCCCAGCTTGTAAAGATACTTGTTTTGGTGTGCTAAAATTACAGATGTGGGAACGTAGATATGATGGCAGCAAGGGAAAGATGATATTAGATGTTAAAAGCAACATGGCCGCAGTAGAAGTTGGAGGGGGTCCATGGTTCAGTGCTTGGAAGGGAAAGACCTCTACTCCGGAGCTTCTTAAGCGGGCTATAGGAGCTCCGGTCGATGTAGAAGGGGCATATAATTTGGTTCCACTATTCAAACCCCCTGGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009706 GO:0009915 GO:0009941 GO:0009975 GO:0009976 GO:0009987 GO:0010189 GO:0010232 GO:0010233 GO:0010287 GO:0015766 GO:0015770 GO:0015772 GO:0015994 GO:0016020 GO:0016108 GO:0016116 GO:0016122 GO:0018130 GO:0019752 GO:0019866 GO:0031090 GO:0031347 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032787 GO:0033013 GO:0042170 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051186 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:0080134 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Tocopherol_cycl

Protein Analysis

486

Amino Acids

54.36

Weight (kDa)

6.26

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tocopherol_cycl	PF14249	88 - 444	2e-145	Tocopherol cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32770
fragaria_vesca	FvH4_2g35770 FvH4_2g35770 FvH4_2g35770 FvH4_2g35770
malus_domestica	MD08G1115600.v1.1 MD15G1095400.v1.1
prunus_persica	Prupe.1G450300_v2.0.a1
pyrus_communis	pycom15g08780
rosa_chinensis	RchiOBHm_Chr6g0306001
rosa_laevigata	RLG00000010833
rosa_multiflora	Rmu_sc0020534.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162140
rosa_rugosa	Rorug06G0346200 Rorug06G0346300
rosa_samantha	Rh6AG458000 Rh6BG442800 Rh6CG472500 Rh6DG458700
rosa_wichuraiana	Rw6G039950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	950
Acc36I	ACCTGC	1 cut(s)	950
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	240, 612
AccB7I	CCANNNNNTGG	2 cut(s)	701, 1064
AccBSI	CCGCTC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	431
AccIII	TCCGGA	2 cut(s)	222, 1372
AciI	CCGC	7 cut(s)	237, 307, 431, 653, 691, 1314, 1387
AclWI	GGATC	2 cut(s)	1154, 1167
AcoI	YGGCCR	2 cut(s)	177, 1311
AcsI	RAATTY	3 cut(s)	266, 566, 1049
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	7 cut(s)	242, 284, 332, 443, 688, 1056, 1168
AfiI	CCNNNNNNNGG	4 cut(s)	236, 701, 740, 1064
AflII	CTTAAG	1 cut(s)	1382
AgsI	TTSAA	8 cut(s)	289, 571, 770, 848, 929, 1004, 1139, 1444
AjnI	CCWGG	4 cut(s)	615, 982, 1162, 1450
AleI	CACNNNNGTG	1 cut(s)	1032
AluBI	AGCT	9 cut(s)	132, 318, 416, 496, 755, 1196, 1211, 1378, 1400
AluI	AGCT	9 cut(s)	132, 318, 416, 496, 755, 1196, 1211, 1378, 1400
Alw21I	GWGCWC	3 cut(s)	418, 1183, 1402
Alw26I	GTCTC	4 cut(s)	130, 355, 989, 1118
AlwI	GGATC	2 cut(s)	1154, 1167
AlwNI	CAGNNNCTG	1 cut(s)	1196
Aor13HI	TCCGGA	2 cut(s)	222, 1372
AoxI	GGCC	2 cut(s)	177, 1311
ApeKI	GCWGC	4 cut(s)	752, 1010, 1112, 1272
ApoI	RAATTY	3 cut(s)	266, 566, 1049
Asp700I	GAANNNNTTC	2 cut(s)	115, 591
Asp718I	GGTACC	1 cut(s)	240
AspA2I	CCTAGG	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
AsuC2I	CCSGG	2 cut(s)	188, 215
AsuHPI	GGTGA	5 cut(s)	26, 148, 159, 722, 842
AsuII	TTCGAA	2 cut(s)	61, 109
AvaII	GGWCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
AvrII	CCTAGG	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	561
BamHI	GGATCC	1 cut(s)	1159
BanI	GGYRCC	2 cut(s)	240, 612
BanII	GRGCYC	3 cut(s)	188, 418, 1402
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	3 cut(s)	418, 1183, 1402
BbvI	GCAGC	4 cut(s)	764, 997, 1099, 1284
BccI	CCATC	7 cut(s)	245, 273, 577, 629, 738, 821, 1262
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	4 cut(s)	617, 984, 1164, 1452
BcnI	CCSGG	2 cut(s)	188, 215
BcoDI	GTCTC	4 cut(s)	130, 355, 989, 1118
BfaI	CTAG	4 cut(s)	101, 396, 468, 936
BfmI	CTRYAG	3 cut(s)	957, 1113, 1392
BfrI	CTTAAG	1 cut(s)	1382
BfuAI	ACCTGC	1 cut(s)	950
BisI	GCNGC	5 cut(s)	753, 1011, 1113, 1273, 1314
BlnI	CCTAGG	1 cut(s)	100
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	5 cut(s)	754, 1012, 1114, 1274, 1315
Bme1390I	CCNGG	6 cut(s)	188, 215, 617, 984, 1164, 1452
Bme18I	GGWCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
BmgT120I	GGNCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
BmrFI	CCNGG	6 cut(s)	188, 215, 617, 984, 1164, 1452
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	1 cut(s)	841
BmuI	ACTGGG	1 cut(s)	886
BpiI	GAAGAC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	2 cut(s)	61, 109
BpuMI	CCSGG	2 cut(s)	188, 215
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	7 cut(s)	100, 616, 983, 1058, 1107, 1337, 1450
BsaWI	WCCGGW	5 cut(s)	169, 222, 404, 1372, 1402
BsaXI	ACNNNNNCTCC	4 cut(s)	1354, 1384, 1389, 1419
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 701, 740, 1064
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	881, 913
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	1172
BseAI	TCCGGA	2 cut(s)	222, 1372
BseBI	CCWGG	4 cut(s)	617, 984, 1164, 1452
BseDI	CCNNGG	7 cut(s)	100, 616, 983, 1058, 1107, 1337, 1450
BseGI	GGATG	4 cut(s)	284, 439, 749, 832
BseLI	CCNNNNNNNGG	4 cut(s)	236, 701, 740, 1064
BseMI	GCAATG	1 cut(s)	1172
BseMII	CTCAG	4 cut(s)	294, 398, 431, 575
BseNI	ACTGG	2 cut(s)	881, 913
BseRI	GAGGAG	3 cut(s)	151, 154, 549
BseX3I	CGGCCG	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	764, 997, 1099, 1284
BseYI	CCCAGC	1 cut(s)	1207
BsgI	GTGCAG	2 cut(s)	8, 654
Bsh1236I	CGCG	1 cut(s)	431
Bsh1285I	CGRYCG	2 cut(s)	180, 1407
BshFI	GGCC	2 cut(s)	179, 1313
BshNI	GGYRCC	2 cut(s)	240, 612
BsiEI	CGRYCG	2 cut(s)	180, 1407
BsiHKAI	GWGCWC	3 cut(s)	418, 1183, 1402
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	4 cut(s)	236, 701, 740, 1064
BsmAI	GTCTC	4 cut(s)	130, 355, 989, 1118
BsmBI	CGTCTC	2 cut(s)	130, 1118
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	2 cut(s)	179, 1313
Bsp119I	TTCGAA	2 cut(s)	61, 109
Bsp1286I	GDGCHC	4 cut(s)	188, 418, 1183, 1402
Bsp13I	TCCGGA	2 cut(s)	222, 1372
Bsp143I	GATC	2 cut(s)	153, 1159
Bsp1720I	GCTNAGC	1 cut(s)	384
Bsp19I	CCATGG	3 cut(s)	1058, 1107, 1337
BspACI	CCGC	7 cut(s)	237, 307, 431, 653, 691, 1314, 1387
BspANI	GGCC	2 cut(s)	179, 1313
BspCNI	CTCAG	4 cut(s)	295, 397, 430, 574
BspEI	TCCGGA	2 cut(s)	222, 1372
BspFNI	CGCG	1 cut(s)	431
BspMAI	CTGCAG	2 cut(s)	961, 1117
BspMI	ACCTGC	1 cut(s)	950
BspPI	GGATC	2 cut(s)	1154, 1167
BspT104I	TTCGAA	2 cut(s)	61, 109
BspT107I	GGYRCC	2 cut(s)	240, 612
BspTI	CTTAAG	1 cut(s)	1382
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	1172
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	881, 913
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	7 cut(s)	100, 616, 983, 1058, 1107, 1337, 1450
BssMI	GATC	2 cut(s)	153, 1159
BssNI	GRCGYC	1 cut(s)	368
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	4 cut(s)	100, 1058, 1107, 1337
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	4 cut(s)	617, 984, 1164, 1452
Bst4CI	ACNGT	5 cut(s)	124, 458, 661, 686, 1031
BstACI	GRCGYC	1 cut(s)	368
BstAFI	CTTAAG	1 cut(s)	1382
BstBI	TTCGAA	2 cut(s)	61, 109
BstC8I	GCNNGC	2 cut(s)	1179, 1389
BstDEI	CTNAG	4 cut(s)	303, 384, 417, 561
BstDSI	CCRYGG	3 cut(s)	1058, 1107, 1337
BstF5I	GGATG	4 cut(s)	284, 439, 749, 832
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	2 cut(s)	156, 1162
BstMAI	GTCTC	4 cut(s)	130, 355, 989, 1118
BstMBI	GATC	2 cut(s)	153, 1159
BstMCI	CGRYCG	2 cut(s)	180, 1407
BstMWI	GCNNNNNNNGC	4 cut(s)	956, 1202, 1384, 1397
BstNI	CCWGG	4 cut(s)	617, 984, 1164, 1452
BstSCI	CCNGG	6 cut(s)	186, 213, 615, 982, 1162, 1450
BstSFI	CTRYAG	3 cut(s)	957, 1113, 1392
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	4 cut(s)	764, 997, 1099, 1284
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	1159
BstXI	CCANNNNNNTGG	2 cut(s)	251, 900
BstYI	RGATCY	1 cut(s)	1159
BstZI	CGGCCG	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	179, 1313
BtgI	CCRYGG	3 cut(s)	1058, 1107, 1337
BtsCI	GGATG	4 cut(s)	284, 439, 749, 832
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	5 cut(s)	20, 463, 920, 1027, 1351
BveI	ACCTGC	1 cut(s)	950
Cac8I	GCNNGC	2 cut(s)	1179, 1389
CaiI	CAGNNNCTG	1 cut(s)	1196
CfoI	GCGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
CseI	GACGC	2 cut(s)	376, 1135
Csp6I	GTAC	7 cut(s)	241, 283, 331, 442, 687, 1055, 1167
CviAII	CATG	6 cut(s)	491, 790, 1059, 1108, 1309, 1338
CviQI	GTAC	7 cut(s)	241, 283, 331, 442, 687, 1055, 1167
DdeI	CTNAG	4 cut(s)	303, 384, 417, 561
DpnI	GATC	2 cut(s)	155, 1161
DpnII	GATC	2 cut(s)	153, 1159
EaeI	YGGCCR	2 cut(s)	177, 1311
EagI	CGGCCG	1 cut(s)	177
Ecl136II	GAGCTC	2 cut(s)	416, 1400
EclXI	CGGCCG	1 cut(s)	177
Eco130I	CCWWGG	4 cut(s)	100, 1058, 1107, 1337
Eco24I	GRGCYC	3 cut(s)	188, 418, 1402
Eco47I	GGWCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
Eco52I	CGGCCG	1 cut(s)	177
Eco53kI	GAGCTC	2 cut(s)	416, 1400
Eco81I	CCTNAGG	1 cut(s)	561
EcoICRI	GAGCTC	2 cut(s)	416, 1400
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	4 cut(s)	615, 982, 1162, 1450
EcoT14I	CCWWGG	4 cut(s)	100, 1058, 1107, 1337
EcoT22I	ATGCAT	1 cut(s)	791
EcoT38I	GRGCYC	3 cut(s)	188, 418, 1402
ErhI	CCWWGG	4 cut(s)	100, 1058, 1107, 1337
Esp3I	CGTCTC	2 cut(s)	130, 1118
FaeI	CATG	6 cut(s)	494, 793, 1062, 1111, 1312, 1341
FalI	AAGNNNNNCTT	4 cut(s)	936, 968, 1185, 1217
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	6 cut(s)	490, 789, 1058, 1107, 1308, 1337
FauI	CCCGC	3 cut(s)	230, 698, 1380
FauNDI	CATATG	1 cut(s)	1131
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	753, 1011, 1113, 1273, 1314
FokI	GGATG	4 cut(s)	291, 446, 756, 839
FriOI	GRGCYC	3 cut(s)	188, 418, 1402
Fsp4HI	GCNGC	5 cut(s)	753, 1011, 1113, 1273, 1314
FspBI	CTAG	4 cut(s)	101, 396, 468, 936
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	5 cut(s)	753, 1011, 1113, 1273, 1314
GsaI	CCCAGC	1 cut(s)	1211
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	179, 1313
HgaI	GACGC	2 cut(s)	376, 1135
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	6 cut(s)	494, 793, 1062, 1111, 1312, 1341
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HinfI	GANTC	8 cut(s)	10, 82, 91, 298, 343, 408, 421, 464
HphI	GGTGA	5 cut(s)	26, 148, 159, 722, 842
Hpy166II	GTNNAC	3 cut(s)	193, 807, 1027
Hpy188I	TCNGA	7 cut(s)	210, 264, 413, 420, 868, 994, 1192
Hpy188III	TCNNGA	7 cut(s)	223, 302, 340, 563, 629, 848, 1373
Hpy8I	GTNNAC	3 cut(s)	193, 807, 1027
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	5 cut(s)	581, 867, 923, 1348, 1409
HpyCH4III	ACNGT	5 cut(s)	124, 458, 661, 686, 1031
HpyCH4IV	ACGT	2 cut(s)	673, 1258
HpyCH4V	TGCA	5 cut(s)	25, 671, 789, 959, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	956, 1202, 1384, 1397
HpyF3I	CTNAG	4 cut(s)	303, 384, 417, 561
HpySE526I	ACGT	2 cut(s)	673, 1258
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	6 cut(s)	494, 793, 1062, 1111, 1312, 1341
HspAI	GCGC	1 cut(s)	429
Kpn2I	TCCGGA	2 cut(s)	222, 1372
KpnI	GGTACC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	153, 1159
LmnI	GCTCC	7 cut(s)	413, 725, 884, 1186, 1375, 1397, 1405
Lsp1109I	GCAGC	4 cut(s)	764, 997, 1099, 1284
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	4 cut(s)	101, 396, 468, 936
MaeII	ACGT	2 cut(s)	673, 1258
MaeIII	GTNAC	2 cut(s)	470, 598
MalI	GATC	2 cut(s)	155, 1161
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	2 cut(s)	153, 1159
MboII	GAAGA	2 cut(s)	9, 473
MflI	RGATCY	1 cut(s)	1159
MhlI	GDGCHC	4 cut(s)	188, 418, 1183, 1402
MlyI	GAGTC	2 cut(s)	19, 417
MmeI	TCCRAC	4 cut(s)	391, 794, 1208, 1306
Mph1103I	ATGCAT	1 cut(s)	791
MroI	TCCGGA	2 cut(s)	222, 1372
MroXI	GAANNNNTTC	2 cut(s)	115, 591
MseI	TTAA	2 cut(s)	1299, 1383
MslI	CAYNNNNRTG	2 cut(s)	249, 1032
MspA1I	CMGCKG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	1382
MspR9I	CCNGG	6 cut(s)	188, 215, 617, 984, 1164, 1452
Mva1269I	GAATGC	1 cut(s)	887
MvaI	CCWGG	4 cut(s)	617, 984, 1164, 1452
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	956, 1202, 1384, 1397
NciI	CCSGG	2 cut(s)	188, 215
NcoI	CCATGG	3 cut(s)	1058, 1107, 1337
NdeI	CATATG	1 cut(s)	1131
NdeII	GATC	2 cut(s)	153, 1159
NlaIII	CATG	6 cut(s)	494, 793, 1062, 1111, 1312, 1341
NmeAIII	GCCGAG	2 cut(s)	205, 405
NsiI	ATGCAT	1 cut(s)	791
NspV	TTCGAA	2 cut(s)	61, 109
OliI	CACNNNNGTG	1 cut(s)	1032
PaqCI	CACCTGC	1 cut(s)	950
PctI	GAATGC	1 cut(s)	887
PdmI	GAANNNNTTC	2 cut(s)	115, 591
PfeI	GAWTC	6 cut(s)	82, 91, 298, 343, 421, 464
PflMI	CCANNNNNTGG	2 cut(s)	701, 1064
PkrI	GCNGC	5 cut(s)	754, 1012, 1114, 1274, 1315
PleI	GAGTC	2 cut(s)	18, 416
PpsI	GAGTC	2 cut(s)	18, 416
PpuMI	RGGWCCY	1 cut(s)	217
Psp124BI	GAGCTC	2 cut(s)	418, 1402
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	4 cut(s)	615, 982, 1162, 1450
PspFI	CCCAGC	1 cut(s)	1207
PspGI	CCWGG	4 cut(s)	615, 982, 1162, 1450
PspPI	GGNCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
PspPPI	RGGWCCY	1 cut(s)	217
PstI	CTGCAG	2 cut(s)	961, 1117
PstNI	CAGNNNCTG	1 cut(s)	1196
PsuI	RGATCY	1 cut(s)	1159
RsaI	GTAC	7 cut(s)	242, 284, 332, 443, 688, 1056, 1168
RsaNI	GTAC	7 cut(s)	241, 283, 331, 442, 687, 1055, 1167
RseI	CAYNNNNRTG	2 cut(s)	249, 1032
SacI	GAGCTC	2 cut(s)	418, 1402
SaqAI	TTAA	2 cut(s)	1299, 1383
SatI	GCNGC	5 cut(s)	753, 1011, 1113, 1273, 1314
Sau3AI	GATC	2 cut(s)	153, 1159
Sau96I	GGNCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
SchI	GAGTC	2 cut(s)	19, 417
ScrFI	CCNGG	6 cut(s)	188, 215, 617, 984, 1164, 1452
SduI	GDGCHC	4 cut(s)	188, 418, 1183, 1402
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	3 cut(s)	957, 1113, 1392
SfuI	TTCGAA	2 cut(s)	61, 109
SinI	GGWCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
SmiMI	CAYNNNNRTG	2 cut(s)	249, 1032
SmlI	CTYRAG	1 cut(s)	1382
SmoI	CTYRAG	1 cut(s)	1382
SsiI	CCGC	7 cut(s)	237, 307, 431, 653, 691, 1314, 1387
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	4 cut(s)	101, 396, 468, 936
SstI	GAGCTC	2 cut(s)	418, 1402
StyD4I	CCNGG	6 cut(s)	186, 213, 615, 982, 1162, 1450
StyI	CCWWGG	4 cut(s)	100, 1058, 1107, 1337
TaaI	ACNGT	5 cut(s)	124, 458, 661, 686, 1031
TaiI	ACGT	2 cut(s)	676, 1261
TaqI	TCGA	7 cut(s)	61, 109, 249, 296, 339, 533, 1407
TatI	WGTACW	2 cut(s)	330, 441
TauI	GCSGC	1 cut(s)	1316
TfiI	GAWTC	6 cut(s)	82, 91, 298, 343, 421, 464
Tru1I	TTAA	2 cut(s)	1299, 1383
Tru9I	TTAA	2 cut(s)	1299, 1383
TscAI	CASTG	5 cut(s)	27, 463, 920, 1034, 1351
TseI	GCWGC	4 cut(s)	752, 1010, 1112, 1272
TspDTI	ATGAA	1 cut(s)	1062
TspGWI	ACGGA	3 cut(s)	325, 344, 405
TspRI	CASTG	5 cut(s)	27, 463, 920, 1034, 1351
Van91I	CCANNNNNTGG	2 cut(s)	701, 1064
Vha464I	CTTAAG	1 cut(s)	1382
VpaK11BI	GGWCC	6 cut(s)	217, 225, 392, 910, 1104, 1334
XapI	RAATTY	3 cut(s)	266, 566, 1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	702
XmaJI	CCTAGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	2 cut(s)	115, 591
XspI	CTAG	4 cut(s)	101, 396, 468, 936
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.