Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019433

Physical Location & Seq

Genomic Coordinates Forward (+)

7790691 .. 7792862

Gene Structure 2172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAACTCCTCCTTGCTTTTCTTGACTCTTCTAGCTCTTCTTTTCGTCTCTAACCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACCCGAGTGTTTGAAGCTTGGTGCAAAGAGTATGGCAAGTCATACTCTTCAGAACTAGAAGAGCTTTACAGGCGCAGTGTGTTTGAGCAAAACCATGCCTTGATTACCCAACACAACGAAATGGCTTTTTCTTATACCCTTTCCCTGAATTCGTTTTCTGATATGACCCAAAATGAGTTCAGGGCCTCTCGCTTAGGCTTCAGGCCTATATTTCTCACTATTGAGCACAATGCAGAGAAGAAATCCAGTGTAAATAGGCGTGTTGTGACGATTGATTCTTTTAAATATGTGCCCCTATATGATGAGGAACAACTGCTACAAGCTGTGGCAAGGCAACCTGTGAGTGCAAGTATCGCTGCCAGTAGCTTTGCTTTTCAGTTCTACTCAAAGGGGATTGTCACTGGTTCATGTTCGACTTTGTTGGATCATGCTGTATTAATCGTAGGTTATGGTTCAGAAAATGGAGTGGATTATTGGATTTTAAAGAATTCATGGGGCAAACGTTGGGGAATGGATGGCTATATGTATCTGCAACGTGATCATGGAAATCGCAAAGGGCTCTGTGGTATCAACATGTTTGCTTTATATCCAATAAAGACTGGTGCAAATCCTCCTCCGCCAGGTCCTGTGAATTGTGATAGATCTCATTCACTGTTGCCCCCTGAGTATCCAATTTGTGATACAGAAAGGAAATTGTGCTTACAGGCTTATGGGAACTTAACAATGAAAGTGAATGAGAGTAGAAGCAGTGCTAGGAAGTTGGGTACAAGCAATGTTGCTCGGAAGTTGGGTACAGGCAGTGTTGCTGGGAAGTCATGGCAACCACGACTACAGCCTTTCTTTATTGGGGATTGGCCTATACCGATCCCTCCTAGCCCTGTTCAAGTAATACTGACGAACAATGTGTCATACTTCTTACCAGGGAATAATTCTTCTGCTGATCGATCCGAATCGATTCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

353

Amino Acids

39.32

Weight (kDa)

8.92

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	36 - 92	8.2e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	74 - 230	2.1e-34	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301921
rosa_laevigata	RLG00000011205
rosa_roxburghii	Rroxscaffold_7G00166260
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422800 Rh6BG429600 Rh6DG423000
rosa_wichuraiana	Rw6G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	713
AclI	AACGTT	1 cut(s)	598
AclWI	GGATC	3 cut(s)	528, 955, 1035
AcsI	RAATTY	2 cut(s)	244, 583
AcuI	CTGAAG	2 cut(s)	129, 280
AfaI	GTAC	2 cut(s)	862, 889
AfiI	CCNNNNNNNGG	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	3 cut(s)	96, 110, 980
AjnI	CCWGG	2 cut(s)	715, 1015
AluBI	AGCT	5 cut(s)	35, 113, 160, 419, 462
AluI	AGCT	5 cut(s)	35, 113, 160, 419, 462
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	3 cut(s)	528, 955, 1035
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	3 cut(s)	279, 299, 950
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	2 cut(s)	244, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	986, 1018
AseI	ATTAAT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	1050
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	279, 719
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	719
BaeGI	GKGCMC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	2 cut(s)	64, 605
BciT130I	CCWGG	2 cut(s)	717, 1017
BciVI	GTATCC	1 cut(s)	774
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	4 cut(s)	32, 152, 849, 969
BfmI	CTRYAG	1 cut(s)	926
BfuI	GTATCC	1 cut(s)	774
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	717, 1017
Bme18I	GGWCC	1 cut(s)	719
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	279, 719
BmrFI	CCNGG	2 cut(s)	717, 1017
Bpu10I	CCTNAGC	1 cut(s)	289
Bsa29I	ATCGAT	2 cut(s)	1039, 1049
BsaBI	GATNNNNATC	1 cut(s)	1045
BsaJI	CCNNGG	1 cut(s)	1016
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse1I	ACTGG	4 cut(s)	342, 456, 502, 700
Bse3DI	GCAATG	1 cut(s)	874
Bse8I	GATNNNNATC	1 cut(s)	1045
BseBI	CCWGG	2 cut(s)	717, 1017
BseCI	ATCGAT	2 cut(s)	1039, 1049
BseDI	CCNNGG	1 cut(s)	1016
BseGI	GGATG	1 cut(s)	616
BseJI	GATNNNNATC	1 cut(s)	1045
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	4 cut(s)	342, 456, 502, 700
BseRI	GAGGAG	1 cut(s)	699
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	439
BseYI	CCCAGC	1 cut(s)	902
BshFI	GGCC	3 cut(s)	281, 301, 952
BshVI	ATCGAT	2 cut(s)	1039, 1049
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	281, 301, 952
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	324, 390, 657
Bsp143I	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
BspACI	CCGC	1 cut(s)	713
BspANI	GGCC	3 cut(s)	281, 301, 952
BspCNI	CTCAG	1 cut(s)	751
BspDI	ATCGAT	2 cut(s)	1039, 1049
BspPI	GGATC	3 cut(s)	528, 955, 1035
BspQI	GCTCTTC	2 cut(s)	42, 150
BsrDI	GCAATG	1 cut(s)	874
BsrI	ACTGG	4 cut(s)	342, 456, 502, 700
BssECI	CCNNGG	1 cut(s)	1016
BssMI	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
Bst2UI	CCWGG	2 cut(s)	717, 1017
Bst4CI	ACNGT	1 cut(s)	750
Bst6I	CTCTTC	4 cut(s)	33, 42, 148, 150
BstDEI	CTNAG	2 cut(s)	289, 759
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	6 cut(s)	523, 637, 740, 963, 1039, 1043
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 449
BstNI	CCWGG	2 cut(s)	717, 1017
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	715, 1015
BstSFI	CTRYAG	1 cut(s)	926
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
Bsu15I	ATCGAT	2 cut(s)	1039, 1049
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	3 cut(s)	281, 301, 952
BsuTUI	ATCGAT	2 cut(s)	1039, 1049
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	3 cut(s)	178, 850, 901
BtsIMutI	CAGTG	6 cut(s)	178, 349, 495, 746, 850, 901
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	279, 719
ClaI	ATCGAT	2 cut(s)	1039, 1049
Csp6I	GTAC	2 cut(s)	861, 888
CviAII	CATG	7 cut(s)	191, 504, 524, 588, 638, 670, 912
CviQI	GTAC	2 cut(s)	861, 888
DdeI	CTNAG	2 cut(s)	289, 759
DpnI	GATC	6 cut(s)	522, 636, 739, 962, 1038, 1042
DpnII	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
DraI	TTTAAA	2 cut(s)	379, 579
Eam1104I	CTCTTC	4 cut(s)	33, 42, 148, 150
EarI	CTCTTC	4 cut(s)	33, 42, 148, 150
EciI	GGCGGA	1 cut(s)	702
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	719
Eco57I	CTGAAG	2 cut(s)	129, 280
Eco88I	CYCGRG	1 cut(s)	99
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoO109I	RGGNCCY	2 cut(s)	279, 719
EcoRI	GAATTC	2 cut(s)	244, 583
EcoRII	CCWGG	2 cut(s)	715, 1015
EcoT38I	GRGCYC	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	7 cut(s)	194, 507, 527, 591, 641, 673, 915
FatI	CATG	7 cut(s)	190, 503, 523, 587, 637, 669, 911
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	4 cut(s)	32, 152, 849, 969
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	453
GsaI	CCCAGC	1 cut(s)	906
HaeIII	GGCC	3 cut(s)	281, 301, 952
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	7 cut(s)	194, 507, 527, 591, 641, 673, 915
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	4 cut(s)	25, 371, 1046, 1051
Hpy188I	TCNGA	5 cut(s)	148, 256, 553, 879, 1045
Hpy188III	TCNNGA	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	750
HpyCH4IV	ACGT	2 cut(s)	598, 631
HpyCH4V	TGCA	5 cut(s)	120, 329, 443, 628, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 449
HpyF3I	CTNAG	2 cut(s)	289, 759
HpySE526I	ACGT	2 cut(s)	598, 631
Hsp92II	CATG	7 cut(s)	194, 507, 527, 591, 641, 673, 915
HspAI	GCGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
LguI	GCTCTTC	2 cut(s)	42, 150
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	4 cut(s)	32, 152, 849, 969
MaeII	ACGT	2 cut(s)	598, 631
MaeIII	GTNAC	2 cut(s)	361, 493
MalI	GATC	6 cut(s)	522, 636, 739, 962, 1038, 1042
MboI	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
MflI	RGATCY	1 cut(s)	737
MhlI	GDGCHC	3 cut(s)	324, 390, 657
MluCI	AATT	6 cut(s)	244, 583, 727, 768, 788, 1024
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	6 cut(s)	19, 292, 394, 717, 720, 975
MroXI	GAANNNNTTC	1 cut(s)	1050
MseI	TTAA	5 cut(s)	378, 533, 578, 815, 1060
MspR9I	CCNGG	2 cut(s)	717, 1017
MvaI	CCWGG	2 cut(s)	717, 1017
MwoI	GCNNNNNNNGC	2 cut(s)	166, 449
NdeII	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
NlaIII	CATG	7 cut(s)	194, 507, 527, 591, 641, 673, 915
NmuCI	GTSAC	2 cut(s)	361, 493
NspI	RCATGY	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	301
PciI	ACATGT	1 cut(s)	669
PciSI	GCTCTTC	2 cut(s)	42, 150
PdmI	GAANNNNTTC	1 cut(s)	1050
PfeI	GAWTC	3 cut(s)	371, 1046, 1051
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	719
PscI	ACATGT	1 cut(s)	669
PshBI	ATTAAT	1 cut(s)	533
Psp1406I	AACGTT	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	2 cut(s)	715, 1015
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	2 cut(s)	715, 1015
PspPI	GGNCC	2 cut(s)	279, 719
PspPPI	RGGWCCY	1 cut(s)	719
PsrI	GAACNNNNNNTAC	2 cut(s)	396, 428
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	737
RsaI	GTAC	2 cut(s)	862, 889
RsaNI	GTAC	2 cut(s)	861, 888
SapI	GCTCTTC	2 cut(s)	42, 150
SaqAI	TTAA	5 cut(s)	378, 533, 578, 815, 1060
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	6 cut(s)	520, 634, 737, 960, 1036, 1040
Sau96I	GGNCC	2 cut(s)	279, 719
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	717, 1017
SduI	GDGCHC	3 cut(s)	324, 390, 657
SfcI	CTRYAG	1 cut(s)	926
SinI	GGWCC	1 cut(s)	719
Sse9I	AATT	6 cut(s)	244, 583, 727, 768, 788, 1024
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	713
SspMI	CTAG	4 cut(s)	32, 152, 849, 969
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	715, 1015
TaaI	ACNGT	1 cut(s)	750
TaiI	ACGT	2 cut(s)	601, 634
TaqI	TCGA	3 cut(s)	509, 1039, 1049
TasI	AATT	6 cut(s)	244, 583, 727, 768, 788, 1024
TfiI	GAWTC	3 cut(s)	371, 1046, 1051
Tru1I	TTAA	5 cut(s)	378, 533, 578, 815, 1060
Tru9I	TTAA	5 cut(s)	378, 533, 578, 815, 1060
TscAI	CASTG	6 cut(s)	178, 349, 502, 753, 850, 901
TseFI	GTSAC	2 cut(s)	361, 493
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	2 cut(s)	361, 493
TspDTI	ATGAA	4 cut(s)	17, 492, 576, 836
TspRI	CASTG	6 cut(s)	178, 349, 502, 753, 850, 901
VpaK11BI	GGWCC	1 cut(s)	719
VspI	ATTAAT	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	2 cut(s)	244, 583
XceI	RCATGY	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	1050
XspI	CTAG	4 cut(s)	32, 152, 849, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.