Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0019433

Physical Location & Seq

Genomic Coordinates Reverse (-)

64968087 .. 64971271

Gene Structure 3185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG429600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAACTCCTCCTTACTTTTCTTGACTCTTCTAACTCTTCTTTTCGTCTCTAACCCATCTTCTTCTTCTTCTTCTTCTTCAACCCAAGTGTTTGAAGCTTGGTGCAAAGAGTATGGCAAGTCATACTCTTCAGAACTAGAAGAGCTTTACAGGCGCAGTGTGTTTGAGCAAAACCTTGCCTTGATTACCCAACACAACGAAATGGCTTTTTCTTATACCCTTTCCCTGAATTCGTTTTCTGATATGACCCAAAATGAGTTCAGGGCCTCTCGCTTAGGCTTCAGGCCTATATTTCTCACTATTGAGCACAATGCAGAGAAGAAATCCAGTGTGGCTAGTGATGTTCCTTCTTCAATGGATTGGAGGGAGAAAGGGGCTGTGACTAGTGTTAAAGATCAAGGGGATTGTGGTTCTTCTTGGGCGTTCTCGGCTATTGGTGCCATCGAAGGTATCAACAAGATTGTGACTGGATCACTTATCAGCCTCTCTGAACAAGAGTTGATGGATTGTAACAAAGGTCTCACAACTAGAGGCTGCAGCGGCGGACAAGTGGCCAGTGCATTTCAATTTGTCATGAAAAACAAGGGAATTGACACTGATATGGACTACCCGTATCAATCTTGGGATATGGACTGCAATCAGGAAAAGGTAAATAGGCGTGTTGTGACGATTGATTCTTTTAAATATGTGCCCCTATATGATGAGGAACAACTACTACAAGCTGTGGCAAGGCAACCTGTGAGTGCAAGTATCGCTGCCAGTAGCTTTGCTTTTCAGTTCTACTCAAAGGGGATTGTCACTGGTTCATGTTCGACTTTGTTGGATCATGCTGTATTAATCGTAGGTTATGGTTCAGAAAATGGAGTGGACTATTGGATTTTAAAGAATTCATGGGGCAAACGTTGGGGAATGGATGGCTATATGTATCTGCAACGTGATCATAGAAATCGCAAAGGGCTCTGTGGTATCAACATGTTTGCTTTATATCCAATAAAGACTGGTGCAAATCCTCCTCCACCAGGTCCTGTGAATTGTGATAGTAATGGAGGGGAAACCTGCTGTTGTTGGATGTGGTTTCGTGGAACATGCCGTTCTTGGACATGTTGTGACAACTTTGGTGTCTGTTGTGAGGATCTCATTCACTGTTGCCCCCCTGAGTATCCAATTTGTGATACAGAAAGGAAATTGTGCTTACAGGTTCGTAACAACTGTTACTTATTCAAGTTAGAAAGAACTATGAAGCTTGATTTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

418

Amino Acids

46.99

Weight (kDa)

5.55

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	31 - 87	6.5e-18	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	115 - 331	3.5e-76	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301921
rosa_laevigata	RLG00000011205
rosa_roxburghii	Rroxscaffold_7G00166260
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422800 Rh6BG429600 Rh6DG423000
rosa_wichuraiana	Rw6G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1064
AccB1I	GGYRCC	1 cut(s)	437
AciI	CCGC	2 cut(s)	540, 543
AclI	AACGTT	1 cut(s)	901
AclWI	GGATC	3 cut(s)	478, 831, 1140
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	229, 886
AcuI	CTGAAG	2 cut(s)	114, 265
AfiI	CCNNNNNNNGG	1 cut(s)	1019
AflIII	ACRYGT	2 cut(s)	972, 1100
AgsI	TTSAA	5 cut(s)	81, 95, 354, 566, 1222
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	1018
AluBI	AGCT	5 cut(s)	98, 145, 722, 765, 1243
AluI	AGCT	5 cut(s)	98, 145, 722, 765, 1243
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	2 cut(s)	52, 524
AlwI	GGATC	3 cut(s)	478, 831, 1140
AlwNI	CAGNNNCTG	1 cut(s)	1025
AoxI	GGCC	3 cut(s)	264, 284, 552
ApeKI	GCWGC	3 cut(s)	534, 537, 755
ApoI	RAATTY	2 cut(s)	229, 886
AseI	ATTAAT	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	264, 1022
AvaII	GGWCC	1 cut(s)	1022
BaeGI	GKGCMC	1 cut(s)	693
BalI	TGGCCA	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	521, 549, 742
BccI	CCATC	4 cut(s)	64, 449, 496, 908
BceAI	ACGGC	1 cut(s)	1074
BciT130I	CCWGG	1 cut(s)	1020
BciVI	GTATCC	1 cut(s)	1170
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	2 cut(s)	52, 524
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	4 cut(s)	137, 336, 384, 528
BfmI	CTRYAG	1 cut(s)	535
BfuAI	ACCTGC	1 cut(s)	1064
BfuI	GTATCC	1 cut(s)	1170
BisI	GCNGC	4 cut(s)	535, 538, 541, 756
BlsI	GCNGC	4 cut(s)	536, 539, 542, 757
Bme1390I	CCNGG	1 cut(s)	1020
Bme18I	GGWCC	1 cut(s)	1022
BmgT120I	GGNCC	2 cut(s)	264, 1022
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	1020
Bpu10I	CCTNAGC	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	1 cut(s)	1019
Bse1I	ACTGG	6 cut(s)	327, 472, 555, 759, 805, 1003
BseBI	CCWGG	1 cut(s)	1020
BseGI	GGATG	2 cut(s)	919, 1074
BseLI	CCNNNNNNNGG	1 cut(s)	1019
BseMII	CTCAG	1 cut(s)	1146
BseNI	ACTGG	6 cut(s)	327, 472, 555, 759, 805, 1003
BseRI	GAGGAG	1 cut(s)	1002
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	3 cut(s)	521, 549, 742
BshFI	GGCC	3 cut(s)	266, 286, 554
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	1019
BsmAI	GTCTC	2 cut(s)	52, 524
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	266, 286, 554
Bso31I	GGTCTC	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	309, 693, 960
Bsp143I	GATC	5 cut(s)	394, 470, 823, 937, 1132
BspACI	CCGC	2 cut(s)	540, 543
BspANI	GGCC	3 cut(s)	266, 286, 554
BspCNI	CTCAG	1 cut(s)	1147
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	539
BspMI	ACCTGC	1 cut(s)	1064
BspPI	GGATC	3 cut(s)	478, 831, 1140
BspQI	GCTCTTC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	524
BsrI	ACTGG	6 cut(s)	327, 472, 555, 759, 805, 1003
BssMI	GATC	5 cut(s)	394, 470, 823, 937, 1132
Bst2UI	CCWGG	1 cut(s)	1020
Bst4CI	ACNGT	2 cut(s)	1145, 1211
Bst6I	CTCTTC	4 cut(s)	33, 42, 133, 135
BstDEI	CTNAG	2 cut(s)	274, 1155
BstENI	CCTNNNNNAGG	1 cut(s)	1017
BstF5I	GGATG	2 cut(s)	919, 1074
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	5 cut(s)	397, 473, 826, 940, 1135
BstMAI	GTCTC	2 cut(s)	52, 524
BstMBI	GATC	5 cut(s)	394, 470, 823, 937, 1132
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 428, 437, 540, 752
BstNI	CCWGG	1 cut(s)	1020
BstNSI	RCATGY	3 cut(s)	976, 1089, 1104
BstSCI	CCNGG	1 cut(s)	1018
BstSFI	CTRYAG	1 cut(s)	535
BstSLI	GKGCMC	1 cut(s)	693
BstV1I	GCAGC	3 cut(s)	521, 549, 742
BstX2I	RGATCY	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1132
BsuI	GTATCC	1 cut(s)	1170
BsuRI	GGCC	3 cut(s)	266, 286, 554
BtsCI	GGATG	2 cut(s)	919, 1074
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	6 cut(s)	163, 334, 562, 594, 798, 1141
BveI	ACCTGC	1 cut(s)	1064
CaiI	CAGNNNCTG	1 cut(s)	1025
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	264, 1022
CsiI	ACCWGGT	1 cut(s)	1018
CviAII	CATG	7 cut(s)	574, 807, 827, 891, 973, 1086, 1101
DdeI	CTNAG	2 cut(s)	274, 1155
DpnI	GATC	5 cut(s)	396, 472, 825, 939, 1134
DpnII	GATC	5 cut(s)	394, 470, 823, 937, 1132
DraI	TTTAAA	2 cut(s)	682, 882
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	4 cut(s)	33, 42, 133, 135
EarI	CTCTTC	4 cut(s)	33, 42, 133, 135
EciI	GGCGGA	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	1022
Eco57I	CTGAAG	2 cut(s)	114, 265
EcoNI	CCTNNNNNAGG	1 cut(s)	1017
EcoO109I	RGGNCCY	2 cut(s)	264, 1022
EcoRI	GAATTC	2 cut(s)	229, 886
EcoRII	CCWGG	1 cut(s)	1018
EcoT38I	GRGCYC	1 cut(s)	960
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	7 cut(s)	577, 810, 830, 894, 976, 1089, 1104
FatI	CATG	7 cut(s)	573, 806, 826, 890, 972, 1085, 1100
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	4 cut(s)	535, 538, 541, 756
FokI	GGATG	2 cut(s)	926, 1081
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	4 cut(s)	535, 538, 541, 756
FspBI	CTAG	4 cut(s)	137, 336, 384, 528
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	4 cut(s)	535, 538, 541, 756
HaeIII	GGCC	3 cut(s)	266, 286, 554
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	7 cut(s)	577, 810, 830, 894, 976, 1089, 1104
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	2 cut(s)	96, 1241
HinfI	GANTC	2 cut(s)	25, 674
Hpy166II	GTNNAC	1 cut(s)	868
Hpy188I	TCNGA	4 cut(s)	133, 241, 490, 856
Hpy188III	TCNNGA	3 cut(s)	22, 574, 641
Hpy8I	GTNNAC	1 cut(s)	868
HpyAV	CCTTC	2 cut(s)	357, 440
HpyCH4III	ACNGT	2 cut(s)	1145, 1211
HpyCH4IV	ACGT	2 cut(s)	901, 934
HpyCH4V	TGCA	8 cut(s)	105, 314, 537, 560, 636, 746, 931, 1004
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 428, 437, 540, 752
HpyF3I	CTNAG	2 cut(s)	274, 1155
HpySE526I	ACGT	2 cut(s)	901, 934
Hsp92II	CATG	7 cut(s)	577, 810, 830, 894, 976, 1089, 1104
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	5 cut(s)	394, 470, 823, 937, 1132
LguI	GCTCTTC	1 cut(s)	135
Lsp1109I	GCAGC	3 cut(s)	521, 549, 742
MabI	ACCWGGT	1 cut(s)	1018
MaeI	CTAG	4 cut(s)	137, 336, 384, 528
MaeII	ACGT	2 cut(s)	901, 934
MaeIII	GTNAC	8 cut(s)	379, 463, 509, 664, 796, 1106, 1202, 1211
MalI	GATC	5 cut(s)	396, 472, 825, 939, 1134
MboI	GATC	5 cut(s)	394, 470, 823, 937, 1132
MflI	RGATCY	1 cut(s)	1132
MhlI	GDGCHC	3 cut(s)	309, 693, 960
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	7 cut(s)	229, 566, 588, 886, 1030, 1164, 1184
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	2 cut(s)	801, 1046
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	4 cut(s)	390, 681, 836, 881
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	1020
MvaI	CCWGG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	5 cut(s)	151, 428, 437, 540, 752
NdeII	GATC	5 cut(s)	394, 470, 823, 937, 1132
NlaIII	CATG	7 cut(s)	577, 810, 830, 894, 976, 1089, 1104
NlaIV	GGNNCC	1 cut(s)	439
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	5 cut(s)	379, 463, 664, 796, 1106
NspI	RCATGY	3 cut(s)	976, 1089, 1104
PagI	TCATGA	1 cut(s)	573
PceI	AGGCCT	1 cut(s)	286
PciI	ACATGT	2 cut(s)	972, 1100
PciSI	GCTCTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	674
PkrI	GCNGC	4 cut(s)	536, 539, 542, 757
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	1022
PscI	ACATGT	2 cut(s)	972, 1100
PshBI	ATTAAT	1 cut(s)	836
Psp1406I	AACGTT	1 cut(s)	901
Psp5II	RGGWCCY	1 cut(s)	1022
Psp6I	CCWGG	1 cut(s)	1018
PspGI	CCWGG	1 cut(s)	1018
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	264, 1022
PspPPI	RGGWCCY	1 cut(s)	1022
PsrI	GAACNNNNNNTAC	2 cut(s)	699, 731
PstI	CTGCAG	1 cut(s)	539
PstNI	CAGNNNCTG	1 cut(s)	1025
PsuI	RGATCY	1 cut(s)	1132
RseI	CAYNNNNRTG	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	4 cut(s)	390, 681, 836, 881
SatI	GCNGC	4 cut(s)	535, 538, 541, 756
Sau3AI	GATC	5 cut(s)	394, 470, 823, 937, 1132
Sau96I	GGNCC	2 cut(s)	264, 1022
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	1020
SduI	GDGCHC	3 cut(s)	309, 693, 960
SexAI	ACCWGGT	1 cut(s)	1018
SfcI	CTRYAG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	1022
SmiMI	CAYNNNNRTG	1 cut(s)	599
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	7 cut(s)	229, 566, 588, 886, 1030, 1164, 1184
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	540, 543
SspMI	CTAG	4 cut(s)	137, 336, 384, 528
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	1018
TaaI	ACNGT	2 cut(s)	1145, 1211
TaiI	ACGT	2 cut(s)	904, 937
TaqI	TCGA	2 cut(s)	444, 812
TasI	AATT	7 cut(s)	229, 566, 588, 886, 1030, 1164, 1184
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	4 cut(s)	390, 681, 836, 881
Tru9I	TTAA	4 cut(s)	390, 681, 836, 881
TscAI	CASTG	6 cut(s)	163, 334, 562, 601, 805, 1148
TseFI	GTSAC	5 cut(s)	379, 463, 664, 796, 1106
TseI	GCWGC	3 cut(s)	534, 537, 755
Tsp45I	GTSAC	5 cut(s)	379, 463, 664, 796, 1106
TspDTI	ATGAA	5 cut(s)	17, 590, 795, 879, 1253
TspRI	CASTG	6 cut(s)	163, 334, 562, 601, 805, 1148
VpaK11BI	GGWCC	1 cut(s)	1022
VspI	ATTAAT	1 cut(s)	836
XagI	CCTNNNNNAGG	1 cut(s)	1017
XapI	RAATTY	2 cut(s)	229, 886
XceI	RCATGY	3 cut(s)	976, 1089, 1104
XspI	CTAG	4 cut(s)	137, 336, 384, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.