Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019433

Physical Location & Seq

Genomic Coordinates Reverse (-)

61573153 .. 61575523

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG422800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCTTTTTCTTATACCCTCTCCCTGAATTCGTTTTCTGATATGACCCAAAATGAGTTCAGGGCCTCTCGCTTAGGCTTCAGGCCTATATTTCTCACTATTGAGCACAATGCAGAGAAGAAATCCAGTGTGGCTAGTGATGTTCCTTCTTCAATGGATTGGAGGGAGAAAGGGGCTGTGACTAGCGTTAAAGATCAAGGGGATTGTGGTTCTTCTTGGGCATTCTCGGCTATTGGTGCCATCGAAGGTATCAACAAGATTGTGACTGGATCACTTATCAGCCTCTCTGAACAAGAGTTGATGGATTGTAACAAAGGTCTCACAACTAGAGGCTGCAGTGGCGGACAAGTGGCCAGTGCATTTCAATTTGTCATGAAAAACAAGGGAATTGACACAGATAAGGACTACCCGTATCAAGCTTGGGATATGGACTGCAATCAGGAAAAGGTAAATAGGCGTGTTGTGACGATTGATTCTTTTAAATATGTGCCCCTATATGATGAGGAACAACTACTACAAGCTGTGGCAAGGCAACCTGTGAGTGCAAGTATCGCTGCCAGTAGCTTTGCTTTTCAGTTCTACTCAAAGGGGATTGTCACTGGTTCATGTTCGACTTTGTTGGATCATGCTGTATTAATCGTAGGTTATGGTTCAGAAAATGGAGTGGATTATTGGATTTTAAAGAATTCATGGGGGAAACGTTGGGGAATGGATGGCTATATGTATCTGCAACGTGATCATGGAAATCGCAAAGGGCTCTGTGGTATCAACATGTTTGCTTTATATCCAATAAAGACTGGTGCAAATCCTCCTCCGCCAGGTCCTGTGAATTGTGATAGTAATGGAGGGGAAACCTGCTGTTGTTGGATGTGGTTTCATGGAACTTGCCGTTCTTGGACATGTTGTGACAACTTTGGTGTCTGTTGTGAGGATCTCATTCACTGTTGCCCCCCTGAGTATCCAATTTGTGATACAGAAAGGAAATTGTGCTTACAGGCTTATGGGAACTTAACAATGAAAGTGCATGAGAGTAGAAGCAGTGCTAGGAAGTTGGGTACAAGCAATGTTGCTCGGAAGTTGGGTACAGGCAGTGTTGCTGGGAAGTCATGGCAACCACGACTACAGCCTTTCTTTATTGGGGATTGGCCTATACCAATCCCTCCTAGCCCTGTTCAAGTAATACTGACGAACAATGTGTCATACTTCGTGGCAAGGAATAATTCTTCTGCTGATCGATCCAAATCGATTCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

418

Amino Acids

46.22

Weight (kDa)

7.77

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	48 - 264	1e-76	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301921
rosa_laevigata	RLG00000011205
rosa_roxburghii	Rroxscaffold_7G00166260
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422800 Rh6BG429600 Rh6DG423000
rosa_wichuraiana	Rw6G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	2 cut(s)	342, 815
AclI	AACGTT	1 cut(s)	700
AclWI	GGATC	4 cut(s)	277, 630, 939, 1230
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	28, 685
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	1057, 1084
AfiI	CCNNNNNNNGG	1 cut(s)	818
AflIII	ACRYGT	2 cut(s)	771, 899
AgsI	TTSAA	3 cut(s)	153, 365, 1175
AjnI	CCWGG	1 cut(s)	817
AluBI	AGCT	3 cut(s)	419, 521, 564
AluI	AGCT	3 cut(s)	419, 521, 564
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	4 cut(s)	277, 630, 939, 1230
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	4 cut(s)	63, 83, 351, 1145
ApeKI	GCWGC	2 cut(s)	333, 554
ApoI	RAATTY	2 cut(s)	28, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
AseI	ATTAAT	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	63, 821
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	320, 541
BccI	CCATC	3 cut(s)	248, 295, 707
BceAI	ACGGC	1 cut(s)	873
BciT130I	CCWGG	1 cut(s)	819
BciVI	GTATCC	1 cut(s)	969
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
BfmI	CTRYAG	2 cut(s)	334, 1121
BfuAI	ACCTGC	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	969
BisI	GCNGC	2 cut(s)	334, 555
BlsI	GCNGC	2 cut(s)	335, 556
Bme1390I	CCNGG	1 cut(s)	819
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	2 cut(s)	63, 821
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	73
Bsa29I	ATCGAT	2 cut(s)	1234, 1244
BsaBI	GATNNNNATC	1 cut(s)	1240
BsaI	GGTCTC	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	818
Bse1I	ACTGG	6 cut(s)	126, 271, 354, 558, 604, 802
Bse3DI	GCAATG	1 cut(s)	1069
Bse8I	GATNNNNATC	1 cut(s)	1240
BseBI	CCWGG	1 cut(s)	819
BseCI	ATCGAT	2 cut(s)	1234, 1244
BseGI	GGATG	2 cut(s)	718, 873
BseJI	GATNNNNATC	1 cut(s)	1240
BseLI	CCNNNNNNNGG	1 cut(s)	818
BseMI	GCAATG	1 cut(s)	1069
BseMII	CTCAG	1 cut(s)	945
BseNI	ACTGG	6 cut(s)	126, 271, 354, 558, 604, 802
BseRI	GAGGAG	1 cut(s)	801
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	2 cut(s)	320, 541
BseYI	CCCAGC	1 cut(s)	1097
BshFI	GGCC	4 cut(s)	65, 85, 353, 1147
BshNI	GGYRCC	1 cut(s)	236
BshVI	ATCGAT	2 cut(s)	1234, 1244
BsiHKAI	GWGCWC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	818
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	65, 85, 353, 1147
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	3 cut(s)	108, 492, 759
Bsp143I	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
BspACI	CCGC	2 cut(s)	342, 815
BspANI	GGCC	4 cut(s)	65, 85, 353, 1147
BspCNI	CTCAG	1 cut(s)	946
BspDI	ATCGAT	2 cut(s)	1234, 1244
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	338
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	4 cut(s)	277, 630, 939, 1230
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	1069
BsrI	ACTGG	6 cut(s)	126, 271, 354, 558, 604, 802
BssMI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	1 cut(s)	944
BstDEI	CTNAG	2 cut(s)	73, 954
BstENI	CCTNNNNNAGG	1 cut(s)	816
BstF5I	GGATG	2 cut(s)	718, 873
BstKTI	GATC	7 cut(s)	196, 272, 625, 739, 934, 1234, 1238
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 236, 339, 551
BstNI	CCWGG	1 cut(s)	819
BstNSI	RCATGY	2 cut(s)	775, 903
BstSCI	CCNGG	1 cut(s)	817
BstSFI	CTRYAG	2 cut(s)	334, 1121
BstSLI	GKGCMC	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	320, 541
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
Bsu15I	ATCGAT	2 cut(s)	1234, 1244
BsuI	GTATCC	1 cut(s)	969
BsuRI	GGCC	4 cut(s)	65, 85, 353, 1147
BsuTUI	ATCGAT	2 cut(s)	1234, 1244
BtsCI	GGATG	2 cut(s)	718, 873
BtsI	GCAGTG	3 cut(s)	343, 1045, 1096
BtsIMutI	CAGTG	7 cut(s)	133, 343, 361, 597, 940, 1045, 1096
BveI	ACCTGC	1 cut(s)	863
CaiI	CAGNNNCTG	1 cut(s)	824
CciI	TCATGA	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	63, 821
ClaI	ATCGAT	2 cut(s)	1234, 1244
Csp6I	GTAC	2 cut(s)	1056, 1083
CviQI	GTAC	2 cut(s)	1056, 1083
DdeI	CTNAG	2 cut(s)	73, 954
DpnI	GATC	7 cut(s)	195, 271, 624, 738, 933, 1233, 1237
DpnII	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
DraI	TTTAAA	2 cut(s)	481, 681
EaeI	YGGCCR	1 cut(s)	351
EciI	GGCGGA	2 cut(s)	357, 804
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	816
EcoO109I	RGGNCCY	2 cut(s)	63, 821
EcoRI	GAATTC	2 cut(s)	28, 685
EcoRII	CCWGG	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	759
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	2 cut(s)	334, 555
FokI	GGATG	2 cut(s)	725, 880
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	2 cut(s)	334, 555
FspBI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
GluI	GCNGC	2 cut(s)	334, 555
GsaI	CCCAGC	1 cut(s)	1101
HaeIII	GGCC	4 cut(s)	65, 85, 353, 1147
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	2 cut(s)	473, 1246
Hpy188I	TCNGA	4 cut(s)	40, 289, 655, 1074
Hpy188III	TCNNGA	2 cut(s)	373, 440
HpyAV	CCTTC	2 cut(s)	156, 239
HpyCH4III	ACNGT	1 cut(s)	944
HpyCH4IV	ACGT	2 cut(s)	700, 733
HpyCH4V	TGCA	8 cut(s)	113, 336, 359, 435, 545, 730, 803, 1024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 236, 339, 551
HpyF3I	CTNAG	2 cut(s)	73, 954
HpySE526I	ACGT	2 cut(s)	700, 733
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
Lsp1109I	GCAGC	2 cut(s)	320, 541
MaeI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
MaeII	ACGT	2 cut(s)	700, 733
MaeIII	GTNAC	6 cut(s)	178, 262, 308, 463, 595, 905
MalI	GATC	7 cut(s)	195, 271, 624, 738, 933, 1233, 1237
MboI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
MboII	GAAGA	4 cut(s)	130, 141, 204, 1215
MflI	RGATCY	1 cut(s)	931
MhlI	GDGCHC	3 cut(s)	108, 492, 759
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	8 cut(s)	28, 365, 387, 685, 829, 963, 983, 1219
MluNI	TGGCCA	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	600, 845
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
Msp20I	TGGCCA	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	819
MwoI	GCNNNNNNNGC	4 cut(s)	227, 236, 339, 551
NdeII	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
NlaIV	GGNNCC	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	5 cut(s)	178, 262, 463, 595, 905
NspI	RCATGY	2 cut(s)	775, 903
PagI	TCATGA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	85
PciI	ACATGT	2 cut(s)	771, 899
PctI	GAATGC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	473, 1246
PkrI	GCNGC	2 cut(s)	335, 556
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	2 cut(s)	771, 899
PshBI	ATTAAT	1 cut(s)	635
Psp1406I	AACGTT	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	817
PspFI	CCCAGC	1 cut(s)	1097
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	63, 821
PspPPI	RGGWCCY	1 cut(s)	821
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PstI	CTGCAG	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	931
RsaI	GTAC	2 cut(s)	1057, 1084
RsaNI	GTAC	2 cut(s)	1056, 1083
SaqAI	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
SatI	GCNGC	2 cut(s)	334, 555
Sau3AI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
Sau96I	GGNCC	2 cut(s)	63, 821
ScrFI	CCNGG	1 cut(s)	819
SduI	GDGCHC	3 cut(s)	108, 492, 759
SfcI	CTRYAG	2 cut(s)	334, 1121
SinI	GGWCC	1 cut(s)	821
Sse9I	AATT	8 cut(s)	28, 365, 387, 685, 829, 963, 983, 1219
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	342, 815
SspMI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	817
TaaI	ACNGT	1 cut(s)	944
TaiI	ACGT	2 cut(s)	703, 736
TaqI	TCGA	4 cut(s)	243, 611, 1234, 1244
TasI	AATT	8 cut(s)	28, 365, 387, 685, 829, 963, 983, 1219
TfiI	GAWTC	2 cut(s)	473, 1246
Tru1I	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
Tru9I	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
TscAI	CASTG	7 cut(s)	133, 343, 361, 604, 947, 1045, 1096
TseFI	GTSAC	5 cut(s)	178, 262, 463, 595, 905
TseI	GCWGC	2 cut(s)	333, 554
Tsp45I	GTSAC	5 cut(s)	178, 262, 463, 595, 905
TspDTI	ATGAA	5 cut(s)	389, 594, 678, 866, 1031
TspRI	CASTG	7 cut(s)	133, 343, 361, 604, 947, 1045, 1096
VpaK11BI	GGWCC	1 cut(s)	821
VspI	ATTAAT	1 cut(s)	635
XagI	CCTNNNNNAGG	1 cut(s)	816
XapI	RAATTY	2 cut(s)	28, 685
XceI	RCATGY	2 cut(s)	775, 903
XspI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.